Wall clock time and date at job start Wed Apr 1 2020 00:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47089 * 2 1 4 4 H 1.08999 * 109.47038 * 55.00102 * 3 2 1 5 5 N 1.46496 * 109.46883 * 294.99812 * 3 2 1 6 6 C 1.34777 * 119.99995 * 85.00419 * 5 3 2 7 7 C 1.50700 * 120.00355 * 179.97438 * 6 5 3 8 8 O 1.21289 * 119.99668 * 359.97438 * 6 5 3 9 9 C 1.50703 * 109.47068 * 175.00092 * 3 2 1 10 10 O 1.21275 * 120.00106 * 119.99964 * 9 3 2 11 11 N 1.34779 * 119.99925 * 299.99660 * 9 3 2 12 12 C 1.46497 * 120.00149 * 179.97438 * 11 9 3 13 13 C 1.52996 * 109.47340 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.52387 * 307.79546 * 13 12 11 15 15 C 1.55061 * 110.58676 * 185.00022 * 13 12 11 16 16 C 1.55023 * 102.13348 * 204.93575 * 15 13 12 17 17 C 1.53324 * 103.78694 * 20.86322 * 16 15 13 18 18 C 1.52644 * 115.56381 * 133.64309 * 17 16 15 19 19 N 1.47229 * 87.78111 * 90.04653 * 18 17 16 20 20 C 1.36929 * 135.96928 * 206.41470 * 19 18 17 21 21 H 1.08006 * 119.99870 * 7.80348 * 20 19 18 22 22 C 1.38816 * 120.00238 * 187.80548 * 20 19 18 23 23 N 1.31613 * 119.99924 * 195.33338 * 22 20 19 24 24 Si 1.86798 * 119.99528 * 15.32917 * 22 20 19 25 25 H 1.48501 * 109.47162 * 269.99583 * 24 22 20 26 26 H 1.48507 * 109.46522 * 150.00004 * 24 22 20 27 27 H 1.48498 * 109.47295 * 30.00249 * 24 22 20 28 28 C 1.47221 * 88.06476 * 26.66859 * 19 18 17 29 29 O 1.42845 * 108.32768 * 1.60407 * 17 16 15 30 30 H 1.08998 * 109.47196 * 59.99756 * 1 2 3 31 31 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47067 * 299.99682 * 1 2 3 33 33 H 1.08997 * 109.47541 * 239.99831 * 2 1 3 34 34 H 1.09002 * 109.47289 * 119.99487 * 2 1 3 35 35 H 0.97000 * 120.00339 * 264.99897 * 5 3 2 36 36 H 1.08999 * 109.46961 * 89.99593 * 7 6 5 37 37 H 1.08996 * 109.47041 * 209.99673 * 7 6 5 38 38 H 1.08998 * 109.46720 * 329.99980 * 7 6 5 39 39 H 0.97007 * 120.00114 * 0.02562 * 11 9 3 40 40 H 1.08997 * 109.46946 * 60.00254 * 12 11 9 41 41 H 1.08999 * 109.47092 * 300.00525 * 12 11 9 42 42 H 1.09000 * 110.87112 * 86.77724 * 15 13 12 43 43 H 1.08998 * 111.04731 * 323.17844 * 15 13 12 44 44 H 1.09001 * 110.56238 * 262.28898 * 16 15 13 45 45 H 1.08995 * 110.69137 * 139.49727 * 16 15 13 46 46 H 1.09001 * 113.50036 * 335.32317 * 18 17 16 47 47 H 1.09001 * 113.56148 * 204.78134 * 18 17 16 48 48 H 0.97000 * 120.00254 * 354.90242 * 23 22 20 49 49 H 1.08998 * 113.49938 * 88.05938 * 28 19 18 50 50 H 1.08996 * 113.50607 * 218.60684 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3670 7 6 0.0366 3.3386 -2.6545 8 8 -0.3396 2.6320 -0.4343 9 6 3.5419 1.4444 0.1238 10 8 4.2216 1.9436 -0.7477 11 7 4.1298 0.8912 1.2032 12 6 5.5898 0.8924 1.3233 13 6 5.9946 0.2080 2.6304 14 1 5.4609 0.6475 3.4731 15 6 7.5272 0.3055 2.8450 16 6 7.8063 -0.9146 3.7597 17 6 6.5985 -1.8299 3.5268 18 6 6.9237 -3.3028 3.2931 19 7 6.8203 -3.4975 4.7488 20 6 7.3434 -4.3705 5.6649 21 1 8.1085 -5.0720 5.3667 22 6 6.8903 -4.3539 6.9770 23 7 7.5800 -4.9612 7.9191 24 14 5.3016 -3.4695 7.4052 25 1 5.5996 -2.0567 7.7522 26 1 4.6595 -4.1391 8.5648 27 1 4.3828 -3.5098 6.2393 28 6 5.9031 -2.3465 4.7873 29 8 5.7498 -1.2152 2.5561 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1232 -1.9978 36 1 -0.4405 2.6123 -3.3124 37 1 -0.6612 4.1479 -2.4399 38 1 0.9234 3.7432 -3.1423 39 1 3.5861 0.4916 1.9001 40 1 5.9535 1.9200 1.3230 41 1 6.0241 0.3531 0.4815 42 1 7.7905 1.2361 3.3478 43 1 8.0615 0.2124 1.8996 44 1 7.8574 -0.6064 4.8040 45 1 8.7284 -1.4148 3.4638 46 1 7.9275 -3.4697 2.9026 47 1 6.1575 -3.8339 2.7281 48 1 8.3644 -5.4823 7.6865 49 1 4.8593 -2.6170 4.6280 50 1 6.0455 -1.7061 5.6577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755055864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:45 Heat of formation + Delta-G solvation = -60.470878 kcal Electronic energy + Delta-G solvation = -30150.040763 eV Core-core repulsion = 25986.341858 eV Total energy + Delta-G solvation = -4163.698905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.86967 -40.25460 -39.34527 -37.06514 -35.68653 -34.91538 -32.94760 -32.37019 -32.06143 -30.14824 -29.74859 -27.74479 -26.55412 -25.49764 -23.79193 -22.43776 -21.61169 -21.34964 -20.96668 -20.52287 -19.18015 -18.13368 -17.50110 -17.25889 -16.76144 -16.34360 -16.09137 -15.77082 -15.67663 -15.22611 -14.67033 -14.54460 -14.39944 -14.06492 -13.80752 -13.75459 -13.38507 -13.23490 -13.13752 -12.96559 -12.77046 -12.48527 -12.42374 -12.22268 -12.01743 -11.81354 -11.65072 -11.51916 -11.27151 -11.20824 -11.07428 -10.74219 -10.52930 -10.35179 -10.23920 -10.18507 -9.90358 -9.46016 -9.37523 -9.33342 -8.97106 -8.75432 -7.24848 -6.36162 -3.28553 2.19793 2.27146 2.51574 3.08993 3.36468 3.45303 3.59226 3.73985 4.22671 4.45047 4.50648 4.54595 4.56198 4.63438 4.68547 4.81605 4.83513 4.84841 4.91670 4.98907 5.01704 5.08321 5.20026 5.30802 5.34799 5.41002 5.43584 5.47976 5.49580 5.69237 5.73854 5.77274 5.82629 5.99239 6.06518 6.12357 6.14323 6.19444 6.21142 6.26250 6.29523 6.33499 6.51534 7.03473 7.11118 7.13447 7.25611 7.79305 7.85946 8.18540 8.91747 9.44404 10.30293 11.13940 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002375 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.469467 B =11785.000404 C =12773.689354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.126 3.874 4 H 0.115 0.885 5 N -0.712 5.712 6 C 0.513 3.487 7 C -0.172 4.172 8 O -0.541 6.541 9 C 0.512 3.488 10 O -0.542 6.542 11 N -0.717 5.717 12 C 0.129 3.871 13 C 0.061 3.939 14 H 0.077 0.923 15 C -0.145 4.145 16 C -0.112 4.112 17 C 0.062 3.938 18 C 0.129 3.871 19 N -0.615 5.615 20 C -0.303 4.303 21 H 0.083 0.917 22 C -0.022 4.022 23 N -0.929 5.929 24 Si 1.060 2.940 25 H -0.294 1.294 26 H -0.294 1.294 27 H -0.281 1.281 28 C 0.092 3.908 29 O -0.356 6.356 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.410 0.590 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.408 0.592 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.043 0.957 48 H 0.262 0.738 49 H 0.052 0.948 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 17.158 -20.075 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.133 0.867 5 N -0.367 5.367 6 C 0.300 3.700 7 C -0.232 4.232 8 O -0.419 6.419 9 C 0.298 3.702 10 O -0.419 6.419 11 N -0.368 5.368 12 C 0.005 3.995 13 C 0.003 3.997 14 H 0.095 0.905 15 C -0.184 4.184 16 C -0.150 4.150 17 C 0.021 3.979 18 C 0.002 3.998 19 N -0.345 5.345 20 C -0.429 4.429 21 H 0.101 0.899 22 C -0.222 4.222 23 N -0.571 5.571 24 Si 0.892 3.108 25 H -0.221 1.221 26 H -0.222 1.222 27 H -0.207 1.207 28 C -0.034 4.034 29 O -0.274 6.274 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.243 0.757 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.068 0.932 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.311 17.631 -18.738 28.105 hybrid contribution 1.174 -0.755 -1.108 1.782 sum -10.137 16.875 -19.846 27.953 Atomic orbital electron populations 1.21793 0.93871 1.01232 1.03134 1.21940 0.97896 0.93643 1.03496 1.20875 0.91292 0.95983 0.90079 0.86712 1.45839 1.17181 1.57690 1.15986 1.20784 0.81035 0.77819 0.90354 1.21875 1.03733 1.02281 0.95271 1.90749 1.51077 1.59109 1.40928 1.20549 0.90014 0.77792 0.81892 1.90693 1.65283 1.45761 1.40168 1.45895 1.08204 1.59532 1.23189 1.21478 0.79657 1.00717 0.97611 1.23370 0.96065 0.83855 0.96454 0.90481 1.23138 0.94727 0.99478 1.01022 1.22374 0.97986 0.94096 1.00537 1.23648 0.90335 0.94006 0.89909 1.22388 0.99037 0.90301 0.88068 1.45929 1.52566 1.33990 1.02050 1.20089 1.17677 1.15477 0.89681 0.89901 1.25779 1.03945 1.01549 0.90919 1.70903 1.19370 1.34543 1.32289 0.83802 0.76361 0.75300 0.75354 1.22144 1.22158 1.20704 1.23124 0.95111 0.89880 0.95301 1.88767 1.63144 1.16867 1.58590 0.92502 0.92880 0.91830 0.91076 0.90133 0.75309 0.88773 0.88734 0.90029 0.75673 0.89978 0.90246 0.90068 0.90243 0.90048 0.89953 0.93162 0.93930 0.92786 0.93080 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.51 37.16 0.32 -0.96 16 2 C -0.13 -1.07 5.55 -26.73 -0.15 -1.22 16 3 C 0.13 1.10 2.67 -69.08 -0.18 0.91 16 4 H 0.12 1.04 7.58 -51.93 -0.39 0.64 16 5 N -0.71 -5.70 4.90 -54.93 -0.27 -5.97 16 6 C 0.51 4.34 6.51 -10.99 -0.07 4.26 16 7 C -0.17 -0.81 10.30 36.01 0.37 -0.43 16 8 O -0.54 -6.46 14.24 5.55 0.08 -6.38 16 9 C 0.51 5.18 7.22 -10.98 -0.08 5.10 16 10 O -0.54 -6.92 15.84 5.56 0.09 -6.83 16 11 N -0.72 -6.65 5.42 -60.30 -0.33 -6.98 16 12 C 0.13 1.27 5.41 -4.05 -0.02 1.25 16 13 C 0.06 0.67 3.38 -25.64 -0.09 0.59 16 14 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.15 -1.56 6.60 -24.57 -0.16 -1.72 16 16 C -0.11 -1.64 6.46 -25.49 -0.16 -1.80 16 17 C 0.06 1.05 1.66 -90.66 -0.15 0.90 16 18 C 0.13 2.55 8.20 -8.03 -0.07 2.48 16 19 N -0.62 -14.88 3.58 -184.60 -0.66 -15.55 16 20 C -0.30 -8.58 11.03 -15.06 -0.17 -8.75 16 21 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 22 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 23 N -0.93 -28.91 13.70 55.49 0.76 -28.15 16 24 Si 1.06 26.26 25.51 -169.99 -4.34 21.92 16 25 H -0.29 -6.91 6.97 56.52 0.39 -6.52 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.50 5.65 56.52 0.32 -6.18 16 28 C 0.09 1.91 5.12 -7.88 -0.04 1.87 16 29 O -0.36 -5.24 11.02 -35.23 -0.39 -5.63 16 30 H 0.06 0.55 5.64 -51.93 -0.29 0.25 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.63 7.85 -51.93 -0.41 0.22 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.62 7.43 -51.93 -0.39 0.23 16 35 H 0.41 2.92 7.79 -40.82 -0.32 2.60 16 36 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.41 3.30 7.83 -40.82 -0.32 2.98 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 44 H 0.08 1.25 7.82 -51.93 -0.41 0.85 16 45 H 0.08 1.22 7.81 -51.93 -0.41 0.81 16 46 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 49 H 0.05 1.08 6.98 -51.93 -0.36 0.71 16 50 H 0.05 1.11 6.08 -51.93 -0.32 0.79 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -34.90 395.06 -8.18 -43.08 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.33 Total: 2.82 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.75 Total: 1.71 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.50 Total: -56.65 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.22 Total: -18.84 kcal Atomic # 14 Polarization: 26.26 SS G_CDS: -4.34 Total: 21.92 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.90 -8.18 -43.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755055864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.391 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds