Wall clock time and date at job start Wed Apr 1 2020 00:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47089 * 2 1 4 4 H 1.08999 * 109.47038 * 55.00102 * 3 2 1 5 5 N 1.46496 * 109.46883 * 294.99812 * 3 2 1 6 6 C 1.34777 * 119.99995 * 85.00419 * 5 3 2 7 7 C 1.50700 * 120.00355 * 179.97438 * 6 5 3 8 8 O 1.21289 * 119.99668 * 359.97438 * 6 5 3 9 9 C 1.50703 * 109.47068 * 175.00092 * 3 2 1 10 10 O 1.21275 * 120.00106 * 119.99964 * 9 3 2 11 11 N 1.34779 * 119.99925 * 299.99660 * 9 3 2 12 12 C 1.46497 * 120.00149 * 179.97438 * 11 9 3 13 13 C 1.52996 * 109.47340 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.52387 * 307.79546 * 13 12 11 15 15 C 1.55061 * 110.58676 * 185.00022 * 13 12 11 16 16 C 1.55023 * 102.13348 * 204.93575 * 15 13 12 17 17 C 1.53324 * 103.78694 * 20.86322 * 16 15 13 18 18 C 1.52644 * 115.56381 * 133.64309 * 17 16 15 19 19 N 1.47229 * 87.78111 * 90.04653 * 18 17 16 20 20 C 1.36929 * 135.96928 * 206.41470 * 19 18 17 21 21 H 1.08006 * 119.99870 * 7.80348 * 20 19 18 22 22 C 1.38816 * 120.00238 * 187.80548 * 20 19 18 23 23 N 1.31613 * 119.99924 * 195.33338 * 22 20 19 24 24 Si 1.86798 * 119.99528 * 15.32917 * 22 20 19 25 25 H 1.48501 * 109.47162 * 269.99583 * 24 22 20 26 26 H 1.48507 * 109.46522 * 150.00004 * 24 22 20 27 27 H 1.48498 * 109.47295 * 30.00249 * 24 22 20 28 28 C 1.47221 * 88.06476 * 26.66859 * 19 18 17 29 29 O 1.42845 * 108.32768 * 1.60407 * 17 16 15 30 30 H 1.08998 * 109.47196 * 59.99756 * 1 2 3 31 31 H 1.08997 * 109.47104 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47067 * 299.99682 * 1 2 3 33 33 H 1.08997 * 109.47541 * 239.99831 * 2 1 3 34 34 H 1.09002 * 109.47289 * 119.99487 * 2 1 3 35 35 H 0.97000 * 120.00339 * 264.99897 * 5 3 2 36 36 H 1.08999 * 109.46961 * 89.99593 * 7 6 5 37 37 H 1.08996 * 109.47041 * 209.99673 * 7 6 5 38 38 H 1.08998 * 109.46720 * 329.99980 * 7 6 5 39 39 H 0.97007 * 120.00114 * 0.02562 * 11 9 3 40 40 H 1.08997 * 109.46946 * 60.00254 * 12 11 9 41 41 H 1.08999 * 109.47092 * 300.00525 * 12 11 9 42 42 H 1.09000 * 110.87112 * 86.77724 * 15 13 12 43 43 H 1.08998 * 111.04731 * 323.17844 * 15 13 12 44 44 H 1.09001 * 110.56238 * 262.28898 * 16 15 13 45 45 H 1.08995 * 110.69137 * 139.49727 * 16 15 13 46 46 H 1.09001 * 113.50036 * 335.32317 * 18 17 16 47 47 H 1.09001 * 113.56148 * 204.78134 * 18 17 16 48 48 H 0.97000 * 120.00254 * 354.90242 * 23 22 20 49 49 H 1.08998 * 113.49938 * 88.05938 * 28 19 18 50 50 H 1.08996 * 113.50607 * 218.60684 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3670 7 6 0.0366 3.3386 -2.6545 8 8 -0.3396 2.6320 -0.4343 9 6 3.5419 1.4444 0.1238 10 8 4.2216 1.9436 -0.7477 11 7 4.1298 0.8912 1.2032 12 6 5.5898 0.8924 1.3233 13 6 5.9946 0.2080 2.6304 14 1 5.4609 0.6475 3.4731 15 6 7.5272 0.3055 2.8450 16 6 7.8063 -0.9146 3.7597 17 6 6.5985 -1.8299 3.5268 18 6 6.9237 -3.3028 3.2931 19 7 6.8203 -3.4975 4.7488 20 6 7.3434 -4.3705 5.6649 21 1 8.1085 -5.0720 5.3667 22 6 6.8903 -4.3539 6.9770 23 7 7.5800 -4.9612 7.9191 24 14 5.3016 -3.4695 7.4052 25 1 5.5996 -2.0567 7.7522 26 1 4.6595 -4.1391 8.5648 27 1 4.3828 -3.5098 6.2393 28 6 5.9031 -2.3465 4.7873 29 8 5.7498 -1.2152 2.5561 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.2719 2.1232 -1.9978 36 1 -0.4405 2.6123 -3.3124 37 1 -0.6612 4.1479 -2.4399 38 1 0.9234 3.7432 -3.1423 39 1 3.5861 0.4916 1.9001 40 1 5.9535 1.9200 1.3230 41 1 6.0241 0.3531 0.4815 42 1 7.7905 1.2361 3.3478 43 1 8.0615 0.2124 1.8996 44 1 7.8574 -0.6064 4.8040 45 1 8.7284 -1.4148 3.4638 46 1 7.9275 -3.4697 2.9026 47 1 6.1575 -3.8339 2.7281 48 1 8.3644 -5.4823 7.6865 49 1 4.8593 -2.6170 4.6280 50 1 6.0455 -1.7061 5.6577 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755055864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:44 Heat of formation + Delta-G solvation = -87.998955 kcal Electronic energy + Delta-G solvation = -30151.234470 eV Core-core repulsion = 25986.341858 eV Total energy + Delta-G solvation = -4164.892612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.73571 -41.42170 -40.13840 -38.42486 -36.42345 -35.85417 -34.49742 -33.61297 -33.09017 -31.05421 -30.56208 -29.12364 -27.58705 -27.13492 -24.93065 -23.28944 -23.04078 -22.37378 -21.66474 -21.26847 -20.75424 -19.48365 -18.85162 -18.01051 -17.71713 -17.42799 -17.06419 -16.79677 -16.50092 -16.19342 -16.15183 -15.79249 -15.38984 -15.21328 -15.04453 -14.82988 -14.53789 -14.37226 -14.23142 -13.70708 -13.53137 -13.39342 -13.31076 -13.19084 -13.10403 -12.86629 -12.67991 -12.60723 -12.50293 -12.45073 -12.25193 -12.04712 -11.90620 -11.76616 -11.46119 -11.38010 -11.02240 -10.91978 -10.88119 -10.37178 -10.21188 -10.10311 -9.28749 -8.64711 -5.49588 1.37775 1.42767 1.50336 1.61741 1.65150 1.83827 2.42159 2.51256 2.58173 3.06704 3.16324 3.41779 3.48984 3.60522 3.65743 3.83817 3.92238 3.94713 4.02147 4.11971 4.33456 4.40512 4.45633 4.48255 4.50780 4.57380 4.62903 4.63744 4.67658 4.70286 4.80259 4.83321 4.84109 4.92875 4.99895 5.00649 5.05559 5.11190 5.12239 5.15344 5.24567 5.32069 5.34980 5.41137 5.92524 6.02322 6.37532 6.52796 6.66973 7.03895 7.23526 7.29337 8.23668 8.87040 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002375 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.469467 B =11785.000404 C =12773.689354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.130 3.870 4 H 0.111 0.889 5 N -0.709 5.709 6 C 0.508 3.492 7 C -0.166 4.166 8 O -0.581 6.581 9 C 0.516 3.484 10 O -0.568 6.568 11 N -0.712 5.712 12 C 0.135 3.865 13 C 0.059 3.941 14 H 0.092 0.908 15 C -0.133 4.133 16 C -0.116 4.116 17 C 0.088 3.912 18 C 0.122 3.878 19 N -0.645 5.645 20 C -0.289 4.289 21 H 0.052 0.948 22 C -0.081 4.081 23 N -0.965 5.965 24 Si 1.099 2.901 25 H -0.273 1.273 26 H -0.302 1.302 27 H -0.258 1.258 28 C 0.085 3.915 29 O -0.361 6.361 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.415 0.585 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.415 0.585 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.248 0.752 49 H 0.054 0.946 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 19.677 -21.924 31.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C 0.021 3.979 4 H 0.129 0.871 5 N -0.363 5.363 6 C 0.297 3.703 7 C -0.225 4.225 8 O -0.461 6.461 9 C 0.302 3.698 10 O -0.448 6.448 11 N -0.363 5.363 12 C 0.011 3.989 13 C 0.002 3.998 14 H 0.110 0.890 15 C -0.171 4.171 16 C -0.154 4.154 17 C 0.047 3.953 18 C -0.003 4.003 19 N -0.375 5.375 20 C -0.417 4.417 21 H 0.069 0.931 22 C -0.273 4.273 23 N -0.610 5.610 24 Si 0.924 3.076 25 H -0.199 1.199 26 H -0.230 1.230 27 H -0.182 1.182 28 C -0.041 4.041 29 O -0.279 6.279 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.253 0.747 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.251 0.749 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.274 20.172 -20.649 31.368 hybrid contribution 1.523 -1.559 -0.668 2.280 sum -10.751 18.613 -21.316 30.272 Atomic orbital electron populations 1.21720 0.94386 1.01243 1.02148 1.21901 0.97269 0.93371 1.03900 1.20819 0.90337 0.96301 0.90443 0.87083 1.45877 1.17257 1.57314 1.15870 1.21465 0.80516 0.77228 0.91081 1.21902 1.04720 1.02374 0.93528 1.90732 1.52113 1.60670 1.42577 1.20683 0.90310 0.77225 0.81556 1.90683 1.65901 1.47038 1.41138 1.45875 1.08221 1.59101 1.23134 1.21419 0.79807 1.01202 0.96440 1.23599 0.96740 0.81747 0.97713 0.89034 1.23130 0.94278 0.98720 1.00951 1.22394 0.96609 0.95318 1.01109 1.23110 0.90820 0.93084 0.88264 1.22567 0.99496 0.92684 0.85601 1.45921 1.53512 1.34323 1.03703 1.19922 1.16335 1.14692 0.90740 0.93060 1.27048 1.06364 1.02652 0.91284 1.71009 1.19976 1.36713 1.33278 0.83340 0.73261 0.75366 0.75622 1.19876 1.23042 1.18249 1.23303 0.94801 0.88684 0.97271 1.88757 1.62599 1.19139 1.57375 0.93314 0.92280 0.93009 0.90979 0.89369 0.74670 0.87202 0.88625 0.88076 0.74855 0.88450 0.91141 0.87382 0.88979 0.90828 0.90444 0.92680 0.93544 0.94312 0.92824 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.51 71.98 0.61 -1.71 16 2 C -0.13 -1.85 5.55 30.60 0.17 -1.68 16 3 C 0.13 2.05 2.67 44.25 0.12 2.17 16 4 H 0.11 1.88 7.58 -2.39 -0.02 1.86 16 5 N -0.71 -10.29 4.90 -446.08 -2.19 -12.48 16 6 C 0.51 7.97 6.51 87.66 0.57 8.54 16 7 C -0.17 -1.22 10.30 71.24 0.73 -0.48 16 8 O -0.58 -13.56 14.24 -3.06 -0.04 -13.60 16 9 C 0.52 9.31 7.22 87.66 0.63 9.94 16 10 O -0.57 -13.31 15.84 -3.01 -0.05 -13.36 16 11 N -0.71 -11.18 5.42 -463.08 -2.51 -13.68 16 12 C 0.13 2.18 5.41 86.38 0.47 2.65 16 13 C 0.06 1.08 3.38 31.30 0.11 1.19 16 14 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 15 C -0.13 -2.30 6.60 31.99 0.21 -2.09 16 16 C -0.12 -3.10 6.46 31.40 0.20 -2.90 16 17 C 0.09 2.81 1.66 -10.82 -0.02 2.79 16 18 C 0.12 4.70 8.20 83.40 0.68 5.38 16 19 N -0.64 -30.86 3.58 -739.06 -2.65 -33.50 16 20 C -0.29 -16.73 11.03 84.04 0.93 -15.80 16 21 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 22 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 23 N -0.96 -61.89 13.70 21.65 0.30 -61.59 16 24 Si 1.10 52.65 25.51 68.60 1.75 54.40 16 25 H -0.27 -12.01 6.97 99.48 0.69 -11.32 16 26 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 27 H -0.26 -11.20 5.65 99.48 0.56 -10.64 16 28 C 0.08 3.34 5.12 83.50 0.43 3.77 16 29 O -0.36 -9.46 11.02 -148.98 -1.64 -11.11 16 30 H 0.05 0.90 5.64 -2.39 -0.01 0.89 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.99 7.85 -2.38 -0.02 0.97 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.09 1.16 7.43 -2.39 -0.02 1.14 16 35 H 0.42 5.20 7.79 -92.71 -0.72 4.47 16 36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.41 5.46 7.83 -92.70 -0.73 4.74 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.09 1.42 8.05 -2.39 -0.02 1.40 16 44 H 0.07 2.09 7.82 -2.39 -0.02 2.08 16 45 H 0.08 2.14 7.81 -2.39 -0.02 2.13 16 46 H 0.05 2.04 7.91 -2.39 -0.02 2.02 16 47 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.25 15.94 8.73 -92.71 -0.81 15.13 16 49 H 0.05 2.11 6.98 -2.39 -0.02 2.09 16 50 H 0.05 2.07 6.08 -2.39 -0.01 2.06 16 Total: -1.00 -77.37 395.06 -1.41 -78.78 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.69 Total: 18.75 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 6.31 Total: 7.41 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -7.05 Total: -121.26 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.73 Total: -38.07 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 1.75 Total: 54.40 kcal Total: -77.37 -1.41 -78.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755055864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.223 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds