Wall clock time and date at job start Tue Mar 31 2020 23:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00035 * 2 1 4 4 C 1.53009 * 109.46918 * 239.99879 * 3 2 1 5 5 O 1.42902 * 109.46928 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47522 * 119.99793 * 3 2 1 7 7 C 1.50698 * 109.47004 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 C 1.53790 * 113.61381 * 254.41411 * 10 9 7 12 12 C 1.54050 * 86.98501 * 270.83776 * 11 10 9 13 13 C 1.52995 * 113.62097 * 220.02118 * 12 11 10 14 14 N 1.46896 * 109.47401 * 272.49972 * 13 12 11 15 15 C 1.46896 * 111.00635 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47473 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00026 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99949 * 179.97438 * 16 15 14 19 19 C 1.37091 * 119.99578 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00699 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99424 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99543 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47441 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47002 * 120.00294 * 23 21 19 26 26 H 1.48503 * 109.47065 * 240.00018 * 23 21 19 27 27 C 1.53784 * 113.61758 * 156.80808 * 10 9 7 28 28 H 1.08000 * 119.99897 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00207 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99897 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46592 * 300.00034 * 4 3 2 32 32 H 1.09002 * 109.46680 * 59.99276 * 4 3 2 33 33 H 1.08990 * 109.47127 * 179.97438 * 4 3 2 34 34 H 0.96695 * 113.99732 * 60.00765 * 5 3 2 35 35 H 1.09003 * 109.46690 * 59.99942 * 6 3 2 36 36 H 1.08993 * 109.46773 * 300.00278 * 6 3 2 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 38 38 H 1.09000 * 112.85090 * 25.60669 * 10 9 7 39 39 H 1.08991 * 113.61523 * 25.43812 * 11 10 9 40 40 H 1.09003 * 113.60928 * 156.33750 * 11 10 9 41 41 H 1.09004 * 113.68793 * 89.12916 * 12 11 10 42 42 H 1.09004 * 109.47263 * 32.49415 * 13 12 11 43 43 H 1.08997 * 109.47297 * 152.49619 * 13 12 11 44 44 H 1.00901 * 111.00235 * 56.03839 * 14 13 12 45 45 H 1.09001 * 109.46725 * 299.99949 * 15 14 13 46 46 H 1.09005 * 109.47092 * 59.99212 * 15 14 13 47 47 H 0.96996 * 119.99633 * 359.97438 * 18 16 15 48 48 H 0.96993 * 119.99518 * 179.97438 * 22 21 19 49 49 H 1.08994 * 113.61705 * 203.66826 * 27 10 9 50 50 H 1.09000 * 113.60767 * 334.57134 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2493 5 8 1.1348 2.3913 -0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6911 1.2488 8 8 3.5454 3.4789 0.3392 9 7 4.5390 2.9831 2.2598 10 6 5.2765 4.2489 2.2564 11 6 6.7663 4.0930 1.9084 12 6 7.0137 3.8915 3.4155 13 6 8.2789 4.5833 3.9269 14 7 9.4291 3.6846 3.7619 15 6 10.6645 4.3166 4.2440 16 6 11.8197 3.3667 4.0596 17 8 11.6324 2.2708 3.5746 18 7 13.0612 3.7349 4.4335 19 6 14.1121 2.8706 4.2661 20 1 13.9453 1.8948 3.8343 21 6 15.3921 3.2504 4.6511 22 7 15.5952 4.4379 5.1760 23 14 16.8242 2.0729 4.4224 24 1 16.3343 0.8098 3.8144 25 1 17.8361 2.6919 3.5290 26 1 17.4408 1.7814 5.7415 27 6 5.7289 4.7022 3.6546 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 3.6514 0.5576 -1.2492 32 1 2.3164 1.3282 -2.1393 33 1 3.4878 2.3302 -1.2496 34 1 0.5433 2.4034 0.7642 35 1 3.6514 0.5577 1.2492 36 1 2.3164 1.3285 2.1391 37 1 4.6600 2.3533 2.9876 38 1 4.7742 5.0299 1.6856 39 1 6.9841 3.2106 1.3068 40 1 7.2187 5.0008 1.5092 41 1 6.9404 2.8523 3.7362 42 1 8.4480 5.4978 3.3584 43 1 8.1577 4.8285 4.9820 44 1 9.5238 3.3910 2.8012 45 1 10.8502 5.2295 3.6782 46 1 10.5595 4.5596 5.3014 47 1 13.2111 4.6114 4.8209 48 1 16.4886 4.7028 5.4450 49 1 5.8982 5.7761 3.7320 50 1 5.1098 4.3109 4.4619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755210453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:29 Heat of formation + Delta-G solvation = -81.736486 kcal Electronic energy + Delta-G solvation = -28516.773798 eV Core-core repulsion = 24352.152747 eV Total energy + Delta-G solvation = -4164.621051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.73723 -39.43676 -38.25758 -37.78673 -35.21457 -33.88367 -33.45773 -33.21358 -31.60117 -31.21436 -28.93690 -27.96350 -25.99071 -25.54797 -23.89924 -23.21907 -21.97820 -20.98042 -20.06325 -19.52498 -19.09325 -17.88974 -17.73693 -16.89747 -16.36692 -16.30942 -15.86255 -15.63611 -15.39972 -15.04712 -14.83642 -14.51266 -14.17566 -14.05853 -13.81411 -13.64327 -13.41351 -13.03496 -12.97012 -12.65743 -12.63077 -12.50202 -12.33899 -12.06692 -11.89924 -11.68562 -11.53743 -11.50293 -11.46439 -11.07692 -10.96655 -10.63021 -10.60535 -10.34593 -10.27919 -10.21313 -9.92723 -9.79089 -9.52037 -9.22995 -8.45543 -8.04523 -7.95535 -6.41865 -3.82584 1.73466 2.38593 2.83820 3.16200 3.26707 3.34031 3.86598 3.91244 4.06419 4.21201 4.25620 4.28536 4.29896 4.52573 4.56843 4.66690 4.74581 4.80755 4.83718 5.05710 5.14086 5.23372 5.25430 5.33555 5.37093 5.46125 5.49808 5.53966 5.56728 5.60551 5.70077 5.75451 5.79943 5.87956 5.98531 6.00198 6.01077 6.07506 6.15996 6.25789 6.28129 6.43873 7.22858 7.25000 7.31581 7.55329 7.69049 8.01361 8.06754 8.61516 9.18039 9.54621 10.06124 10.75999 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.001535 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.440693 B =18231.970707 C =19076.002957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.188 4.188 3 C 0.178 3.822 4 C -0.148 4.148 5 O -0.538 6.538 6 C -0.167 4.167 7 C 0.515 3.485 8 O -0.516 6.516 9 N -0.715 5.715 10 C 0.121 3.879 11 C -0.150 4.150 12 C -0.105 4.105 13 C 0.068 3.932 14 N -0.669 5.669 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.139 4.139 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.368 0.632 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.400 0.600 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.349 0.651 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.094 0.906 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.939 -2.043 -4.572 29.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.136 3.864 4 C -0.205 4.205 5 O -0.343 6.343 6 C -0.207 4.207 7 C 0.302 3.698 8 O -0.391 6.391 9 N -0.367 5.367 10 C 0.015 3.985 11 C -0.189 4.189 12 C -0.124 4.124 13 C -0.062 4.062 14 N -0.301 5.301 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.178 4.178 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.214 0.786 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.235 0.765 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.168 0.832 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.113 0.887 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -28.799 -2.315 -5.484 29.408 hybrid contribution 0.951 0.074 0.554 1.103 sum -27.847 -2.241 -4.930 28.369 Atomic orbital electron populations 1.23880 0.96041 1.02440 0.99373 1.23621 0.96771 0.98811 1.01394 1.19850 0.87959 0.84076 0.94506 1.21953 0.98890 1.04403 0.95285 1.86743 1.50019 1.48908 1.48605 1.22412 1.00583 0.96949 1.00793 1.20433 0.79153 0.88365 0.81893 1.90697 1.63980 1.49683 1.34725 1.45742 1.44556 1.20846 1.25525 1.21797 0.92197 0.86555 0.97908 1.23570 0.95689 1.02858 0.96792 1.22666 0.93628 1.00457 0.95614 1.21951 0.90022 0.93436 1.00743 1.60076 1.01897 1.40009 1.28104 1.21672 0.90053 0.95399 1.01139 1.19835 0.83825 0.88824 0.84882 1.90517 1.84170 1.23045 1.49042 1.41874 1.05819 1.17379 1.55040 1.19762 0.85567 0.98915 1.38635 0.87872 1.25264 0.98866 0.96900 0.96931 1.69621 1.23269 1.19190 1.42251 0.85800 0.80477 0.80131 0.77927 1.19231 1.20779 1.20742 1.23329 0.96958 1.01229 0.96267 0.87722 0.88169 0.86539 0.91733 0.92150 0.88753 0.78564 0.87771 0.88646 0.76521 0.88216 0.90938 0.89336 0.88284 0.95409 0.91083 0.83222 0.93976 0.89672 0.77469 0.91937 0.88743 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 13.93 29.02 0.40 -0.57 16 2 C -0.19 -1.11 8.77 -36.02 -0.32 -1.43 16 3 C 0.18 1.34 0.94 -91.77 -0.09 1.25 16 4 C -0.15 -1.34 8.50 37.16 0.32 -1.03 16 5 O -0.54 -4.80 10.85 -53.48 -0.58 -5.38 16 6 C -0.17 -1.01 4.93 -27.88 -0.14 -1.15 16 7 C 0.52 4.69 7.39 -10.99 -0.08 4.61 16 8 O -0.52 -6.72 12.58 -12.69 -0.16 -6.88 16 9 N -0.71 -5.44 5.26 -53.01 -0.28 -5.72 16 10 C 0.12 1.05 4.29 -67.11 -0.29 0.76 16 11 C -0.15 -1.45 7.45 -25.77 -0.19 -1.64 16 12 C -0.10 -0.99 3.79 -89.67 -0.34 -1.33 16 13 C 0.07 0.79 5.52 -3.83 -0.02 0.77 16 14 N -0.67 -10.63 6.12 -115.07 -0.70 -11.34 16 15 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.47 7.82 -10.98 -0.09 10.39 16 17 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 18 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 20 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 C -0.14 -1.04 7.38 -25.92 -0.19 -1.23 16 28 H 0.10 0.54 6.41 -52.49 -0.34 0.21 16 29 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 30 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.10 5.51 -51.93 -0.29 0.81 16 34 H 0.37 1.97 8.05 45.56 0.37 2.34 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 2.20 8.70 -40.82 -0.36 1.84 16 38 H 0.10 1.01 7.50 -51.93 -0.39 0.62 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 41 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.03 0.31 7.85 -51.93 -0.41 -0.10 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 411.24 15.07 6.20 6.20 Total: -1.00 -34.55 411.24 -8.56 -43.12 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -7.48 Total: 15.89 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.29 Total: 2.21 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.32 Total: -55.35 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.65 Total: -28.11 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.55 -8.56 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755210453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.618 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds