Wall clock time and date at job start Tue Mar 31 2020 23:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00035 * 2 1 4 4 C 1.53009 * 109.46918 * 239.99879 * 3 2 1 5 5 O 1.42902 * 109.46928 * 359.97438 * 3 2 1 6 6 C 1.52999 * 109.47522 * 119.99793 * 3 2 1 7 7 C 1.50698 * 109.47004 * 179.97438 * 6 3 2 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 3 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 C 1.53790 * 113.61381 * 254.41411 * 10 9 7 12 12 C 1.54050 * 86.98501 * 270.83776 * 11 10 9 13 13 C 1.52995 * 113.62097 * 220.02118 * 12 11 10 14 14 N 1.46896 * 109.47401 * 272.49972 * 13 12 11 15 15 C 1.46896 * 111.00635 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47473 * 179.97438 * 15 14 13 17 17 O 1.21290 * 120.00026 * 359.97438 * 16 15 14 18 18 N 1.34785 * 119.99949 * 179.97438 * 16 15 14 19 19 C 1.37091 * 119.99578 * 179.97438 * 18 16 15 20 20 H 1.08003 * 120.00699 * 0.02562 * 19 18 16 21 21 C 1.38957 * 119.99424 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99543 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47441 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47002 * 120.00294 * 23 21 19 26 26 H 1.48503 * 109.47065 * 240.00018 * 23 21 19 27 27 C 1.53784 * 113.61758 * 156.80808 * 10 9 7 28 28 H 1.08000 * 119.99897 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00207 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99897 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46592 * 300.00034 * 4 3 2 32 32 H 1.09002 * 109.46680 * 59.99276 * 4 3 2 33 33 H 1.08990 * 109.47127 * 179.97438 * 4 3 2 34 34 H 0.96695 * 113.99732 * 60.00765 * 5 3 2 35 35 H 1.09003 * 109.46690 * 59.99942 * 6 3 2 36 36 H 1.08993 * 109.46773 * 300.00278 * 6 3 2 37 37 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 38 38 H 1.09000 * 112.85090 * 25.60669 * 10 9 7 39 39 H 1.08991 * 113.61523 * 25.43812 * 11 10 9 40 40 H 1.09003 * 113.60928 * 156.33750 * 11 10 9 41 41 H 1.09004 * 113.68793 * 89.12916 * 12 11 10 42 42 H 1.09004 * 109.47263 * 32.49415 * 13 12 11 43 43 H 1.08997 * 109.47297 * 152.49619 * 13 12 11 44 44 H 1.00901 * 111.00235 * 56.03839 * 14 13 12 45 45 H 1.09001 * 109.46725 * 299.99949 * 15 14 13 46 46 H 1.09005 * 109.47092 * 59.99212 * 15 14 13 47 47 H 0.96996 * 119.99633 * 359.97438 * 18 16 15 48 48 H 0.96993 * 119.99518 * 179.97438 * 22 21 19 49 49 H 1.08994 * 113.61705 * 203.66826 * 27 10 9 50 50 H 1.09000 * 113.60767 * 334.57134 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3861 -1.2493 5 8 1.1348 2.3913 -0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6911 1.2488 8 8 3.5454 3.4789 0.3392 9 7 4.5390 2.9831 2.2598 10 6 5.2765 4.2489 2.2564 11 6 6.7663 4.0930 1.9084 12 6 7.0137 3.8915 3.4155 13 6 8.2789 4.5833 3.9269 14 7 9.4291 3.6846 3.7619 15 6 10.6645 4.3166 4.2440 16 6 11.8197 3.3667 4.0596 17 8 11.6324 2.2708 3.5746 18 7 13.0612 3.7349 4.4335 19 6 14.1121 2.8706 4.2661 20 1 13.9453 1.8948 3.8343 21 6 15.3921 3.2504 4.6511 22 7 15.5952 4.4379 5.1760 23 14 16.8242 2.0729 4.4224 24 1 16.3343 0.8098 3.8144 25 1 17.8361 2.6919 3.5290 26 1 17.4408 1.7814 5.7415 27 6 5.7289 4.7022 3.6546 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 3.6514 0.5576 -1.2492 32 1 2.3164 1.3282 -2.1393 33 1 3.4878 2.3302 -1.2496 34 1 0.5433 2.4034 0.7642 35 1 3.6514 0.5577 1.2492 36 1 2.3164 1.3285 2.1391 37 1 4.6600 2.3533 2.9876 38 1 4.7742 5.0299 1.6856 39 1 6.9841 3.2106 1.3068 40 1 7.2187 5.0008 1.5092 41 1 6.9404 2.8523 3.7362 42 1 8.4480 5.4978 3.3584 43 1 8.1577 4.8285 4.9820 44 1 9.5238 3.3910 2.8012 45 1 10.8502 5.2295 3.6782 46 1 10.5595 4.5596 5.3014 47 1 13.2111 4.6114 4.8209 48 1 16.4886 4.7028 5.4450 49 1 5.8982 5.7761 3.7320 50 1 5.1098 4.3109 4.4619 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755210453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:28 Heat of formation + Delta-G solvation = -108.961689 kcal Electronic energy + Delta-G solvation = -28517.954372 eV Core-core repulsion = 24352.152747 eV Total energy + Delta-G solvation = -4165.801625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.43186 -40.28195 -39.92755 -38.52645 -36.51489 -35.76437 -34.19741 -33.89273 -33.25818 -32.11776 -29.96681 -28.83729 -27.20400 -26.62434 -25.31225 -23.94503 -22.84218 -21.62428 -21.12829 -20.58068 -20.12319 -19.85621 -18.35350 -17.89543 -17.48122 -17.07346 -16.94786 -16.51814 -16.45296 -16.16513 -16.05545 -15.57098 -15.47996 -15.41788 -14.92791 -14.65501 -14.43539 -14.12832 -13.86406 -13.66972 -13.50909 -13.35144 -13.21989 -13.13555 -13.05624 -12.85650 -12.72929 -12.48371 -12.42533 -12.40663 -12.11783 -12.00312 -11.79215 -11.51887 -11.40683 -11.18464 -11.04930 -10.55563 -10.34593 -10.31690 -10.01880 -9.94057 -9.30195 -8.47244 -5.96040 1.31669 1.36526 1.41888 1.56107 1.71166 2.04821 2.22927 2.29103 2.93783 3.20094 3.35936 3.50632 3.58025 3.68014 3.77872 3.77935 3.93003 4.00184 4.06010 4.21369 4.33234 4.41272 4.45943 4.51084 4.56271 4.61565 4.71446 4.72243 4.80375 4.82942 4.86526 4.87960 4.91090 4.97834 5.09279 5.15480 5.20952 5.29108 5.40591 5.41798 5.67203 5.73667 5.81648 5.90940 6.13499 6.42768 6.59858 6.62957 6.87724 7.12268 7.37376 7.55867 8.11207 8.70379 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.001535 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.440693 B =18231.970707 C =19076.002957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.192 4.192 3 C 0.175 3.825 4 C -0.150 4.150 5 O -0.562 6.562 6 C -0.159 4.159 7 C 0.510 3.490 8 O -0.561 6.561 9 N -0.706 5.706 10 C 0.121 3.879 11 C -0.153 4.153 12 C -0.099 4.099 13 C 0.069 3.931 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.270 1.270 27 C -0.120 4.120 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.381 0.619 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.413 0.587 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.341 0.659 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.105 0.895 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.706 -2.344 -3.197 29.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.210 4.210 3 C 0.134 3.866 4 C -0.207 4.207 5 O -0.369 6.369 6 C -0.199 4.199 7 C 0.298 3.702 8 O -0.439 6.439 9 N -0.358 5.358 10 C 0.015 3.985 11 C -0.192 4.192 12 C -0.118 4.118 13 C -0.060 4.060 14 N -0.314 5.314 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.158 4.158 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.229 0.771 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.250 0.750 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.159 0.841 45 H 0.081 0.919 46 H 0.123 0.877 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.123 0.877 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.581 -2.599 -4.058 29.971 hybrid contribution 1.140 0.193 0.091 1.160 sum -28.441 -2.405 -3.967 28.817 Atomic orbital electron populations 1.24027 0.95995 1.03028 0.98414 1.23579 0.96911 0.98300 1.02226 1.19866 0.87968 0.84586 0.94226 1.21934 0.99191 1.03373 0.96170 1.86706 1.50680 1.49782 1.49729 1.22419 1.00754 0.95555 1.01203 1.21018 0.78986 0.88957 0.81238 1.90690 1.65498 1.51328 1.36401 1.45691 1.43829 1.20712 1.25586 1.21715 0.91346 0.86751 0.98682 1.23578 0.96630 1.02092 0.96879 1.22585 0.93664 1.00450 0.95117 1.22070 0.88981 0.93227 1.01678 1.60107 1.02227 1.41453 1.27613 1.21542 0.88312 0.94201 1.02778 1.20933 0.84642 0.89141 0.82870 1.90484 1.84933 1.25226 1.50406 1.41943 1.06177 1.17291 1.55651 1.19718 0.87263 0.98905 1.40591 0.90354 1.26041 1.00685 0.98486 0.95994 1.69676 1.24246 1.20136 1.42037 0.84865 0.77280 0.77809 0.78331 1.19841 1.19615 1.19529 1.23246 0.95341 1.01558 0.95688 0.87883 0.86861 0.85238 0.90280 0.93053 0.91671 0.77065 0.85906 0.85943 0.75016 0.89842 0.92608 0.89448 0.88734 0.94410 0.90038 0.84089 0.91861 0.87713 0.76963 0.91287 0.87705 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 13.93 67.79 0.94 -0.67 16 2 C -0.19 -1.95 8.77 25.65 0.23 -1.73 16 3 C 0.17 2.50 0.94 -11.54 -0.01 2.49 16 4 C -0.15 -2.78 8.50 71.99 0.61 -2.17 16 5 O -0.56 -9.94 10.85 -131.53 -1.43 -11.37 16 6 C -0.16 -1.66 4.93 29.85 0.15 -1.52 16 7 C 0.51 9.03 7.39 87.66 0.65 9.67 16 8 O -0.56 -15.11 12.58 14.41 0.18 -14.93 16 9 N -0.71 -9.93 5.26 -440.02 -2.32 -12.25 16 10 C 0.12 1.99 4.29 45.52 0.20 2.19 16 11 C -0.15 -2.88 7.45 31.22 0.23 -2.65 16 12 C -0.10 -1.71 3.79 -10.18 -0.04 -1.75 16 13 C 0.07 1.45 5.52 86.30 0.48 1.93 16 14 N -0.68 -20.90 6.12 -517.96 -3.17 -24.07 16 15 C 0.06 2.18 6.17 85.56 0.53 2.70 16 16 C 0.44 20.87 7.82 87.65 0.69 21.55 16 17 O -0.62 -34.82 15.78 -3.06 -0.05 -34.87 16 18 N -0.57 -29.56 5.29 -306.97 -1.62 -31.18 16 19 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.61 13.05 21.67 0.28 -49.32 16 23 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 C -0.12 -1.49 7.38 31.12 0.23 -1.26 16 28 H 0.10 0.95 6.41 -2.91 -0.02 0.93 16 29 H 0.11 0.73 8.06 -2.91 -0.02 0.70 16 30 H 0.13 0.97 8.06 -2.91 -0.02 0.94 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.63 5.51 -2.39 -0.01 1.61 16 34 H 0.38 3.84 8.05 -74.06 -0.60 3.25 16 35 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.41 3.68 8.70 -92.71 -0.81 2.87 16 38 H 0.08 1.69 7.50 -2.39 -0.02 1.68 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.65 7.90 -2.39 -0.02 1.63 16 41 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.04 0.74 7.85 -2.39 -0.02 0.72 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.34 11.30 8.43 -89.69 -0.76 10.55 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 46 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 47 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.10 1.15 8.10 -2.39 -0.02 1.13 16 50 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -76.60 411.24 -1.85 -78.45 By element: Atomic # 1 Polarization: 46.22 SS G_CDS: -1.91 Total: 44.31 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 6.15 Total: 10.26 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -6.83 Total: -116.82 kcal Atomic # 8 Polarization: -59.87 SS G_CDS: -1.29 Total: -61.17 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -76.60 -1.85 -78.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755210453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.512 kcal (2) G-P(sol) polarization free energy of solvation -76.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds