Wall clock time and date at job start Tue Mar 31 2020 23:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99927 * 2 1 4 4 C 1.52996 * 109.47581 * 120.00001 * 3 2 1 5 5 O 1.42903 * 109.47608 * 359.97438 * 3 2 1 6 6 C 1.53007 * 109.46940 * 240.00021 * 3 2 1 7 7 C 1.50695 * 109.47307 * 55.87881 * 6 3 2 8 8 O 1.21288 * 120.00055 * 5.65438 * 7 6 3 9 9 N 1.34777 * 120.00021 * 185.65543 * 7 6 3 10 10 C 1.46505 * 119.99792 * 179.97438 * 9 7 6 11 11 C 1.53777 * 113.61531 * 254.13562 * 10 9 7 12 12 C 1.54049 * 86.98473 * 270.84246 * 11 10 9 13 13 C 1.53002 * 113.61710 * 220.02201 * 12 11 10 14 14 N 1.46895 * 109.47252 * 272.49445 * 13 12 11 15 15 C 1.46902 * 111.00319 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47257 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99816 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99898 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99876 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99991 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00115 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99870 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00082 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47380 * 60.00122 * 23 21 19 25 25 H 1.48501 * 109.46744 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47101 * 299.99745 * 23 21 19 27 27 C 1.53775 * 113.61009 * 156.52980 * 10 9 7 28 28 H 1.08002 * 119.99681 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00160 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00198 * 179.97438 * 2 1 3 31 31 H 1.08992 * 109.47762 * 184.93733 * 4 3 2 32 32 H 1.09005 * 109.47305 * 304.94177 * 4 3 2 33 33 H 1.09003 * 109.47317 * 64.93351 * 4 3 2 34 34 H 0.96706 * 113.99697 * 300.00520 * 5 3 2 35 35 H 1.09003 * 109.47202 * 175.88191 * 6 3 2 36 36 H 1.09002 * 109.46533 * 295.87665 * 6 3 2 37 37 H 0.96996 * 119.99951 * 359.97438 * 9 7 6 38 38 H 1.09001 * 112.84918 * 25.33607 * 10 9 7 39 39 H 1.09003 * 113.61670 * 25.43555 * 11 10 9 40 40 H 1.09004 * 113.61635 * 156.33617 * 11 10 9 41 41 H 1.09001 * 113.69070 * 89.12939 * 12 11 10 42 42 H 1.09005 * 109.47399 * 32.49372 * 13 12 11 43 43 H 1.09000 * 109.47438 * 152.49570 * 13 12 11 44 44 H 1.00904 * 111.00453 * 56.04689 * 14 13 12 45 45 H 1.08996 * 109.47087 * 300.00348 * 15 14 13 46 46 H 1.09003 * 109.46553 * 60.00355 * 15 14 13 47 47 H 0.96999 * 119.99902 * 0.02562 * 18 16 15 48 48 H 0.96993 * 119.99962 * 180.02562 * 22 21 19 49 49 H 1.09009 * 113.61540 * 203.66607 * 27 10 9 50 50 H 1.08996 * 113.61773 * 334.56373 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3863 1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2493 7 6 2.0891 1.2049 -2.4776 8 8 0.8831 1.1310 -2.3722 9 7 2.6655 1.1248 -3.6933 10 6 1.8352 0.9481 -4.8874 11 6 1.8969 -0.4713 -5.4759 12 6 3.0934 0.0164 -6.3148 13 6 3.0934 -0.5153 -7.7495 14 7 3.7763 -1.8152 -7.7900 15 6 3.7951 -2.3578 -9.1550 16 6 4.5026 -3.6884 -9.1571 17 8 4.9470 -4.1405 -8.1230 18 7 4.6406 -4.3764 -10.3078 19 6 5.2838 -5.5872 -10.3095 20 1 5.6795 -5.9898 -9.3887 21 6 5.4266 -6.2963 -11.4958 22 7 4.9455 -5.8062 -12.6163 23 14 6.3023 -7.9463 -11.4981 24 1 5.5858 -8.8882 -10.6012 25 1 6.3220 -8.4943 -12.8781 26 1 7.6958 -7.7677 -11.0170 27 6 2.5081 1.4322 -6.1825 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.4205 2.3650 1.2945 32 1 2.3277 1.2407 2.1370 33 1 3.7078 0.6107 1.2061 34 1 0.5438 2.4030 -0.7659 35 1 3.4319 2.3597 -1.2870 36 1 3.6987 0.6014 -1.2130 37 1 3.6299 1.1843 -3.7776 38 1 0.8201 1.3227 -4.7563 39 1 2.1575 -1.2364 -4.7446 40 1 1.0237 -0.7348 -6.0728 41 1 4.0557 -0.1065 -5.8179 42 1 2.0657 -0.6339 -8.0931 43 1 3.6143 0.1891 -8.3981 44 1 3.3511 -2.4673 -7.1480 45 1 2.7722 -2.4891 -9.5079 46 1 4.3207 -1.6662 -9.8136 47 1 4.2849 -4.0150 -11.1346 48 1 5.0448 -6.3014 -13.4443 49 1 1.8017 1.6883 -6.9723 50 1 3.2617 2.2030 -6.0213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755210454.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:32 Heat of formation + Delta-G solvation = -86.042373 kcal Electronic energy + Delta-G solvation = -28715.363695 eV Core-core repulsion = 24550.555926 eV Total energy + Delta-G solvation = -4164.807768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.86236 -39.49058 -38.24908 -37.62813 -35.24098 -33.91624 -33.49021 -33.13816 -31.47792 -31.22162 -29.06419 -28.08350 -26.03104 -25.56116 -23.83732 -22.93131 -22.03302 -21.26598 -19.86606 -19.56241 -19.12088 -17.90014 -17.62863 -17.11011 -16.55614 -16.26546 -15.80506 -15.64147 -15.41989 -14.96778 -14.71071 -14.51596 -14.20092 -14.04753 -13.84457 -13.66767 -13.16211 -13.11501 -12.97039 -12.79710 -12.68899 -12.53033 -12.36641 -12.24854 -11.99798 -11.74244 -11.56911 -11.51191 -11.32944 -11.07634 -10.99045 -10.67922 -10.45074 -10.43263 -10.31957 -10.27823 -10.21225 -9.50910 -9.46291 -9.27656 -8.47020 -8.06372 -7.96605 -6.42434 -3.83362 2.12768 2.26479 2.75722 3.19381 3.25038 3.29451 3.90159 3.92753 4.04460 4.20758 4.23437 4.27756 4.36824 4.47304 4.51452 4.61760 4.79829 4.92004 5.00032 5.08933 5.12413 5.16773 5.24404 5.29560 5.40637 5.42680 5.44456 5.45949 5.51830 5.56892 5.68597 5.74333 5.77786 5.80526 5.83899 5.95801 5.98049 6.02942 6.25755 6.35229 6.41134 6.59002 7.11883 7.22714 7.40489 7.54149 7.66741 7.87507 8.05386 8.60597 9.16962 9.53537 10.05116 10.75223 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.001604 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.089028 B =17447.544545 C =18223.773743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.195 4.195 3 C 0.179 3.821 4 C -0.136 4.136 5 O -0.561 6.561 6 C -0.170 4.170 7 C 0.518 3.482 8 O -0.537 6.537 9 N -0.710 5.710 10 C 0.120 3.880 11 C -0.150 4.150 12 C -0.105 4.105 13 C 0.068 3.932 14 N -0.669 5.669 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.139 4.139 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.386 0.614 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.403 0.597 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.095 0.905 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.766 18.627 19.325 27.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.213 4.213 3 C 0.137 3.863 4 C -0.193 4.193 5 O -0.372 6.372 6 C -0.210 4.210 7 C 0.306 3.694 8 O -0.415 6.415 9 N -0.360 5.360 10 C 0.015 3.985 11 C -0.188 4.188 12 C -0.124 4.124 13 C -0.062 4.062 14 N -0.301 5.301 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.178 4.178 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.238 0.762 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.237 0.763 38 H 0.118 0.882 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.168 0.832 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.113 0.887 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.407 18.597 20.384 28.326 hybrid contribution -0.422 -1.176 -1.583 2.016 sum -6.829 17.421 18.801 26.525 Atomic orbital electron populations 1.23659 0.95984 1.01754 0.97125 1.23263 0.96869 0.97833 1.03369 1.19785 0.88068 0.85326 0.93075 1.21718 0.98759 1.02656 0.96143 1.86440 1.50974 1.48688 1.51106 1.22483 0.99927 1.05338 0.93241 1.20637 0.88948 0.75330 0.84534 1.90639 1.14820 1.49905 1.86097 1.45724 1.10551 1.73954 1.05820 1.21822 0.95670 0.97080 0.83976 1.23560 0.98901 0.96883 0.99483 1.22670 0.98757 0.94917 0.96043 1.21953 0.96222 0.92126 0.95859 1.60095 1.58243 1.04582 1.07149 1.21674 0.99017 0.96430 0.91148 1.19827 0.85884 0.86823 0.84886 1.90517 1.53516 1.70636 1.32167 1.41860 1.50838 1.18970 1.08353 1.19658 1.32254 0.95128 0.95957 0.87988 1.25264 0.97899 1.00034 0.94741 1.69604 1.46033 1.39575 0.99111 0.85909 0.79793 0.81374 0.77090 1.19927 1.20971 1.19890 1.23330 1.00481 0.97180 0.96796 0.88058 0.88828 0.87291 0.91570 0.91458 0.90927 0.76172 0.87710 0.87817 0.76286 0.88153 0.90957 0.89314 0.88265 0.95411 0.91049 0.83246 0.93974 0.89662 0.77458 0.91823 0.88690 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 12.63 29.01 0.37 -1.03 16 2 C -0.20 -1.71 7.43 -36.03 -0.27 -1.98 16 3 C 0.18 1.40 1.08 -91.77 -0.10 1.30 16 4 C -0.14 -0.84 8.83 37.16 0.33 -0.52 16 5 O -0.56 -5.46 11.94 -52.37 -0.63 -6.08 16 6 C -0.17 -1.05 4.99 -27.88 -0.14 -1.19 16 7 C 0.52 4.35 7.31 -10.99 -0.08 4.27 16 8 O -0.54 -5.97 11.58 -11.59 -0.13 -6.11 16 9 N -0.71 -5.07 5.26 -53.02 -0.28 -5.35 16 10 C 0.12 0.97 4.30 -67.12 -0.29 0.68 16 11 C -0.15 -1.39 7.45 -25.78 -0.19 -1.58 16 12 C -0.11 -0.97 3.79 -89.67 -0.34 -1.31 16 13 C 0.07 0.78 5.52 -3.83 -0.02 0.76 16 14 N -0.67 -10.56 6.13 -115.06 -0.70 -11.27 16 15 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 16 C 0.44 10.43 7.82 -10.98 -0.09 10.35 16 17 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 18 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 19 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 23 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.14 -0.99 7.38 -25.92 -0.19 -1.18 16 28 H 0.10 0.98 6.41 -52.49 -0.34 0.64 16 29 H 0.09 0.81 8.06 -52.49 -0.42 0.39 16 30 H 0.11 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.39 3.73 5.77 45.56 0.26 3.99 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.40 2.09 8.70 -40.82 -0.36 1.74 16 38 H 0.10 0.93 7.50 -51.93 -0.39 0.54 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.03 0.30 7.85 -51.93 -0.41 -0.10 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.35 5.78 8.43 -39.29 -0.33 5.45 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.09 0.62 8.10 -51.92 -0.42 0.20 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -33.00 409.48 -8.84 -41.85 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -7.72 Total: 17.38 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.28 Total: 1.39 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.32 Total: -54.79 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.67 Total: -28.02 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.00 -8.84 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755210454.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.197 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds