Wall clock time and date at job start Tue Mar 31 2020 23:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99927 * 2 1 4 4 C 1.52996 * 109.47581 * 120.00001 * 3 2 1 5 5 O 1.42903 * 109.47608 * 359.97438 * 3 2 1 6 6 C 1.53007 * 109.46940 * 240.00021 * 3 2 1 7 7 C 1.50695 * 109.47307 * 55.87881 * 6 3 2 8 8 O 1.21288 * 120.00055 * 5.65438 * 7 6 3 9 9 N 1.34777 * 120.00021 * 185.65543 * 7 6 3 10 10 C 1.46505 * 119.99792 * 179.97438 * 9 7 6 11 11 C 1.53777 * 113.61531 * 254.13562 * 10 9 7 12 12 C 1.54049 * 86.98473 * 270.84246 * 11 10 9 13 13 C 1.53002 * 113.61710 * 220.02201 * 12 11 10 14 14 N 1.46895 * 109.47252 * 272.49445 * 13 12 11 15 15 C 1.46902 * 111.00319 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47257 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99816 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99898 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99876 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99991 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00115 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99870 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00082 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47380 * 60.00122 * 23 21 19 25 25 H 1.48501 * 109.46744 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47101 * 299.99745 * 23 21 19 27 27 C 1.53775 * 113.61009 * 156.52980 * 10 9 7 28 28 H 1.08002 * 119.99681 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00160 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00198 * 179.97438 * 2 1 3 31 31 H 1.08992 * 109.47762 * 184.93733 * 4 3 2 32 32 H 1.09005 * 109.47305 * 304.94177 * 4 3 2 33 33 H 1.09003 * 109.47317 * 64.93351 * 4 3 2 34 34 H 0.96706 * 113.99697 * 300.00520 * 5 3 2 35 35 H 1.09003 * 109.47202 * 175.88191 * 6 3 2 36 36 H 1.09002 * 109.46533 * 295.87665 * 6 3 2 37 37 H 0.96996 * 119.99951 * 359.97438 * 9 7 6 38 38 H 1.09001 * 112.84918 * 25.33607 * 10 9 7 39 39 H 1.09003 * 113.61670 * 25.43555 * 11 10 9 40 40 H 1.09004 * 113.61635 * 156.33617 * 11 10 9 41 41 H 1.09001 * 113.69070 * 89.12939 * 12 11 10 42 42 H 1.09005 * 109.47399 * 32.49372 * 13 12 11 43 43 H 1.09000 * 109.47438 * 152.49570 * 13 12 11 44 44 H 1.00904 * 111.00453 * 56.04689 * 14 13 12 45 45 H 1.08996 * 109.47087 * 300.00348 * 15 14 13 46 46 H 1.09003 * 109.46553 * 60.00355 * 15 14 13 47 47 H 0.96999 * 119.99902 * 0.02562 * 18 16 15 48 48 H 0.96993 * 119.99962 * 180.02562 * 22 21 19 49 49 H 1.09009 * 113.61540 * 203.66607 * 27 10 9 50 50 H 1.08996 * 113.61773 * 334.56373 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3863 1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2493 7 6 2.0891 1.2049 -2.4776 8 8 0.8831 1.1310 -2.3722 9 7 2.6655 1.1248 -3.6933 10 6 1.8352 0.9481 -4.8874 11 6 1.8969 -0.4713 -5.4759 12 6 3.0934 0.0164 -6.3148 13 6 3.0934 -0.5153 -7.7495 14 7 3.7763 -1.8152 -7.7900 15 6 3.7951 -2.3578 -9.1550 16 6 4.5026 -3.6884 -9.1571 17 8 4.9470 -4.1405 -8.1230 18 7 4.6406 -4.3764 -10.3078 19 6 5.2838 -5.5872 -10.3095 20 1 5.6795 -5.9898 -9.3887 21 6 5.4266 -6.2963 -11.4958 22 7 4.9455 -5.8062 -12.6163 23 14 6.3023 -7.9463 -11.4981 24 1 5.5858 -8.8882 -10.6012 25 1 6.3220 -8.4943 -12.8781 26 1 7.6958 -7.7677 -11.0170 27 6 2.5081 1.4322 -6.1825 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 3.4205 2.3650 1.2945 32 1 2.3277 1.2407 2.1370 33 1 3.7078 0.6107 1.2061 34 1 0.5438 2.4030 -0.7659 35 1 3.4319 2.3597 -1.2870 36 1 3.6987 0.6014 -1.2130 37 1 3.6299 1.1843 -3.7776 38 1 0.8201 1.3227 -4.7563 39 1 2.1575 -1.2364 -4.7446 40 1 1.0237 -0.7348 -6.0728 41 1 4.0557 -0.1065 -5.8179 42 1 2.0657 -0.6339 -8.0931 43 1 3.6143 0.1891 -8.3981 44 1 3.3511 -2.4673 -7.1480 45 1 2.7722 -2.4891 -9.5079 46 1 4.3207 -1.6662 -9.8136 47 1 4.2849 -4.0150 -11.1346 48 1 5.0448 -6.3014 -13.4443 49 1 1.8017 1.6883 -6.9723 50 1 3.2617 2.2030 -6.0213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755210454.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:31 Heat of formation + Delta-G solvation = -111.413482 kcal Electronic energy + Delta-G solvation = -28716.463869 eV Core-core repulsion = 24550.555926 eV Total energy + Delta-G solvation = -4165.907942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.51760 -40.31916 -39.95406 -38.35448 -36.51372 -35.76768 -34.28816 -33.84393 -33.26262 -32.09798 -29.99297 -28.93614 -27.20393 -26.63098 -25.28699 -23.63673 -22.87381 -21.90559 -21.13426 -20.51455 -20.13445 -19.86154 -18.31074 -17.91060 -17.69647 -17.17874 -17.03439 -16.49606 -16.43198 -16.24456 -15.98086 -15.49617 -15.44295 -15.33823 -14.92425 -14.66355 -14.37669 -14.11475 -13.77932 -13.61773 -13.49986 -13.37551 -13.27936 -13.08937 -13.05642 -12.91416 -12.81596 -12.63281 -12.51705 -12.44051 -12.13067 -11.96947 -11.82954 -11.50976 -11.42093 -11.10217 -11.03346 -10.94510 -10.34879 -10.12703 -10.02452 -9.93866 -9.31121 -8.47114 -5.96125 1.39551 1.41514 1.44092 1.52496 1.63529 2.04567 2.17808 2.28886 2.93241 3.20013 3.33262 3.50025 3.56868 3.67989 3.77036 3.82438 3.89197 3.93378 3.99688 4.32586 4.33643 4.43762 4.45187 4.50118 4.55475 4.60634 4.70761 4.71423 4.79711 4.82320 4.85310 4.89670 4.92495 4.95452 5.08568 5.12876 5.19928 5.29448 5.32418 5.40034 5.67499 5.71229 5.90268 5.90702 6.12700 6.41923 6.56002 6.59531 6.72121 7.11741 7.28117 7.55464 8.10773 8.69947 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.001604 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.089028 B =17447.544545 C =18223.773743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.193 4.193 3 C 0.170 3.830 4 C -0.134 4.134 5 O -0.575 6.575 6 C -0.162 4.162 7 C 0.512 3.488 8 O -0.569 6.569 9 N -0.702 5.702 10 C 0.122 3.878 11 C -0.152 4.152 12 C -0.101 4.101 13 C 0.069 3.931 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.121 4.121 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.383 0.617 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.414 0.586 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.341 0.659 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.105 0.895 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 19.565 18.973 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.211 4.211 3 C 0.129 3.871 4 C -0.191 4.191 5 O -0.385 6.385 6 C -0.202 4.202 7 C 0.300 3.700 8 O -0.448 6.448 9 N -0.353 5.353 10 C 0.016 3.984 11 C -0.191 4.191 12 C -0.120 4.120 13 C -0.060 4.060 14 N -0.314 5.314 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.159 4.159 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.135 0.865 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.235 0.765 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.251 0.749 38 H 0.107 0.893 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.159 0.841 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.526 19.569 20.012 28.530 hybrid contribution -0.715 -1.447 -1.445 2.166 sum -6.241 18.121 18.568 26.685 Atomic orbital electron populations 1.23677 0.96534 1.01511 0.98639 1.23491 0.96803 0.98787 1.02032 1.20033 0.88089 0.84258 0.94713 1.21748 0.98748 1.03793 0.94818 1.86428 1.51438 1.49486 1.51174 1.22474 0.99527 1.07167 0.91048 1.21083 0.88804 0.74710 0.85361 1.90636 1.16299 1.51354 1.86551 1.45670 1.11098 1.73276 1.05292 1.21731 0.95590 0.96216 0.84827 1.23564 0.99009 0.97144 0.99340 1.22596 0.98417 0.96391 0.94551 1.22076 0.96431 0.89982 0.97494 1.60126 1.59574 1.05880 1.05842 1.21543 0.99389 0.93052 0.92860 1.20930 0.84751 0.88339 0.83611 1.90483 1.55018 1.72140 1.33458 1.41935 1.51170 1.18736 1.09164 1.19639 1.34273 0.96931 0.95737 0.90337 1.26048 0.98066 1.03102 0.94040 1.69664 1.46152 1.40725 0.99485 0.84982 0.78503 0.77146 0.77666 1.19731 1.19446 1.19702 1.23252 1.00533 0.96039 0.96104 0.88860 0.88688 0.86520 0.90925 0.92410 0.88913 0.76483 0.85858 0.85633 0.74947 0.89323 0.92689 0.89408 0.88823 0.94375 0.90092 0.84104 0.91842 0.87735 0.76957 0.91275 0.87642 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 12.63 67.78 0.86 -2.39 16 2 C -0.19 -3.32 7.43 25.65 0.19 -3.13 16 3 C 0.17 2.49 1.08 -11.54 -0.01 2.48 16 4 C -0.13 -1.45 8.83 71.98 0.64 -0.82 16 5 O -0.57 -11.09 11.94 -132.59 -1.58 -12.67 16 6 C -0.16 -1.68 4.99 29.85 0.15 -1.53 16 7 C 0.51 8.03 7.31 87.66 0.64 8.67 16 8 O -0.57 -12.63 11.58 13.33 0.15 -12.48 16 9 N -0.70 -8.90 5.26 -440.04 -2.32 -11.22 16 10 C 0.12 1.81 4.30 45.51 0.20 2.01 16 11 C -0.15 -2.69 7.45 31.21 0.23 -2.45 16 12 C -0.10 -1.67 3.79 -10.18 -0.04 -1.70 16 13 C 0.07 1.42 5.52 86.30 0.48 1.89 16 14 N -0.68 -20.70 6.13 -517.93 -3.17 -23.88 16 15 C 0.06 2.16 6.17 85.56 0.53 2.68 16 16 C 0.44 20.76 7.82 87.66 0.69 21.44 16 17 O -0.62 -34.70 15.78 -3.07 -0.05 -34.75 16 18 N -0.57 -29.42 5.29 -306.98 -1.62 -31.05 16 19 C -0.34 -19.14 9.68 84.04 0.81 -18.33 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.46 13.05 21.66 0.28 -49.17 16 23 Si 0.99 42.80 29.55 68.60 2.03 44.83 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C -0.12 -1.40 7.38 31.12 0.23 -1.17 16 28 H 0.09 1.93 6.41 -2.91 -0.02 1.91 16 29 H 0.09 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.12 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 33 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.38 7.64 5.77 -74.05 -0.43 7.21 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.41 3.35 8.70 -92.71 -0.81 2.55 16 38 H 0.09 1.58 7.50 -2.39 -0.02 1.56 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.56 7.90 -2.38 -0.02 1.54 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 0.73 7.85 -2.38 -0.02 0.71 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.34 11.18 8.43 -89.69 -0.76 10.42 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 48 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 49 H 0.11 1.06 8.10 -2.38 -0.02 1.04 16 50 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -72.30 409.48 -1.98 -74.28 By element: Atomic # 1 Polarization: 50.40 SS G_CDS: -1.75 Total: 48.65 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 6.05 Total: 7.45 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -6.83 Total: -115.31 kcal Atomic # 8 Polarization: -58.42 SS G_CDS: -1.48 Total: -59.90 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -72.30 -1.98 -74.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755210454.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.135 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds