Wall clock time and date at job start Tue Mar 31 2020 22:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46849 * 2 1 4 4 N 1.46492 * 109.47343 * 120.00225 * 2 1 3 5 5 C 1.46768 * 124.35107 * 119.94753 * 4 2 1 6 6 C 1.54479 * 105.47520 * 197.03803 * 5 4 2 7 7 H 1.09001 * 111.00189 * 92.71626 * 6 5 4 8 8 C 1.50701 * 110.96944 * 216.46935 * 6 5 4 9 9 O 1.21273 * 119.99878 * 353.82943 * 8 6 5 10 10 N 1.34777 * 119.99680 * 173.83573 * 8 6 5 11 11 C 1.46504 * 119.99662 * 179.97438 * 10 8 6 12 12 C 1.52995 * 109.46939 * 179.97438 * 11 10 8 13 13 H 1.08998 * 109.51733 * 304.89537 * 12 11 10 14 14 C 1.52883 * 109.62452 * 184.90521 * 12 11 10 15 15 N 1.47149 * 108.60906 * 187.89872 * 14 12 11 16 16 C 1.36939 * 120.98051 * 230.50243 * 15 14 12 17 17 H 1.07997 * 120.00005 * 153.37016 * 16 15 14 18 18 C 1.38812 * 120.00369 * 333.37000 * 16 15 14 19 19 N 1.31618 * 119.99520 * 334.96921 * 18 16 15 20 20 Si 1.86799 * 120.00214 * 154.96513 * 18 16 15 21 21 H 1.48492 * 109.47234 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46847 * 240.00036 * 20 18 16 23 23 H 1.48493 * 109.47133 * 120.00469 * 20 18 16 24 24 C 1.47147 * 118.03707 * 50.22791 * 15 14 12 25 25 C 1.53293 * 108.38281 * 309.71539 * 24 15 14 26 26 O 1.42963 * 109.22558 * 52.30612 * 25 24 15 27 27 C 1.54634 * 101.76695 * 334.58644 * 6 5 4 28 28 C 1.34419 * 124.34808 * 299.97574 * 4 2 1 29 29 O 1.21274 * 124.94670 * 359.53454 * 28 4 2 30 30 H 1.09003 * 109.47198 * 299.99721 * 1 2 3 31 31 H 1.09000 * 109.47641 * 59.99796 * 1 2 3 32 32 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46760 * 240.00520 * 2 1 3 34 34 H 1.09009 * 109.46712 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47607 * 299.99862 * 3 2 1 36 36 H 1.09000 * 109.47015 * 60.00677 * 3 2 1 37 37 H 1.09001 * 110.24248 * 78.03853 * 5 4 2 38 38 H 1.08994 * 110.24417 * 316.04279 * 5 4 2 39 39 H 0.97002 * 120.00279 * 359.97438 * 10 8 6 40 40 H 1.08999 * 109.46949 * 60.00165 * 11 10 8 41 41 H 1.08999 * 109.47062 * 299.99844 * 11 10 8 42 42 H 1.09002 * 109.61518 * 68.07880 * 14 12 11 43 43 H 1.08997 * 109.52378 * 307.66778 * 14 12 11 44 44 H 0.97003 * 120.00436 * 354.23193 * 19 18 16 45 45 H 1.09003 * 109.67939 * 69.43741 * 24 15 14 46 46 H 1.09002 * 109.68170 * 189.99471 * 24 15 14 47 47 H 1.09000 * 109.51166 * 172.22512 * 25 24 15 48 48 H 1.08996 * 109.51845 * 292.37477 * 25 24 15 49 49 H 1.08997 * 110.48512 * 143.47517 * 27 6 5 50 50 H 1.08998 * 110.48633 * 265.99301 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8647 -1.8894 1.1726 6 6 2.7598 -2.4959 2.5895 7 1 1.9662 -3.2416 2.6375 8 6 4.0773 -3.0856 3.0226 9 8 5.0034 -3.1398 2.2416 10 7 4.2261 -3.5528 4.2780 11 6 5.5067 -4.1266 4.6989 12 6 5.4088 -4.5771 6.1578 13 1 5.0855 -3.7400 6.7764 14 6 6.7763 -5.0637 6.6378 15 7 6.6189 -5.6658 7.9713 16 6 7.4281 -5.2952 9.0120 17 1 7.0743 -5.3823 10.0286 18 6 8.7031 -4.8075 8.7603 19 7 9.3266 -5.1380 7.6493 20 14 9.5340 -3.6821 9.9983 21 1 8.6285 -3.4644 11.1549 22 1 9.8379 -2.3782 9.3558 23 1 10.7958 -4.3086 10.4678 24 6 5.5623 -6.6733 8.1549 25 6 4.2505 -6.1044 7.6023 26 8 4.4631 -5.6439 6.2657 27 6 2.4038 -1.2535 3.4386 28 6 1.7484 -0.3080 2.4561 29 8 1.0777 0.6552 2.7610 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 3.8975 -1.6177 0.9541 38 1 2.4952 -2.5975 0.4309 39 1 3.4854 -3.5092 4.9028 40 1 6.2906 -3.3753 4.6029 41 1 5.7455 -4.9835 4.0689 42 1 7.4653 -4.2210 6.6945 43 1 7.1628 -5.8084 5.9420 44 1 8.9318 -5.7872 7.0462 45 1 5.8246 -7.5829 7.6144 46 1 5.4479 -6.8961 9.2157 47 1 3.4876 -6.8829 7.6020 48 1 3.9228 -5.2729 8.2261 49 1 1.7071 -1.5214 4.2330 50 1 3.3053 -0.8067 3.8576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035392813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:53 Heat of formation + Delta-G solvation = -95.202504 kcal Electronic energy + Delta-G solvation = -30182.837157 eV Core-core repulsion = 26017.632176 eV Total energy + Delta-G solvation = -4165.204981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.18108 -39.59458 -38.65798 -36.62057 -35.27408 -35.07257 -34.62906 -31.65225 -31.17472 -30.33171 -28.06132 -27.52501 -27.32570 -25.82937 -23.48920 -23.15359 -22.76184 -21.81143 -20.45501 -19.61009 -19.19939 -17.86277 -17.55718 -16.96963 -16.29154 -16.22528 -15.98371 -15.34871 -15.12486 -14.98272 -14.46567 -14.35403 -14.12051 -14.06481 -13.96023 -13.73688 -13.68261 -13.57874 -13.19577 -13.03451 -12.80152 -12.42743 -12.37303 -12.29286 -11.98617 -11.81352 -11.66190 -11.60027 -11.45844 -11.24926 -10.81256 -10.68269 -10.62029 -10.24301 -10.16660 -10.06195 -9.78364 -9.58587 -9.27084 -9.09827 -9.00829 -8.47345 -7.02634 -6.18290 -3.36399 2.29996 2.45694 2.56151 3.06737 3.45095 3.47294 3.60683 3.89410 3.97796 4.06634 4.44063 4.46661 4.48129 4.62108 4.69431 4.83815 4.88302 4.94745 5.11680 5.21249 5.27971 5.28886 5.32166 5.32718 5.41018 5.41866 5.45804 5.51255 5.58527 5.65315 5.75539 5.82464 5.83959 5.89244 5.91819 6.02512 6.14380 6.29034 6.30304 6.42843 6.54465 6.69961 6.81196 6.90852 7.41039 7.59804 7.84634 7.88885 8.08973 8.42540 8.94209 9.69549 10.12146 11.09770 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017962 B = 0.002230 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.463405 B =12553.971205 C =13049.590506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.152 3.848 3 C -0.169 4.169 4 N -0.617 5.617 5 C 0.118 3.882 6 C -0.123 4.123 7 H 0.119 0.881 8 C 0.523 3.477 9 O -0.537 6.537 10 N -0.715 5.715 11 C 0.130 3.870 12 C 0.061 3.939 13 H 0.060 0.940 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.354 4.354 17 H 0.060 0.940 18 C -0.023 4.023 19 N -0.913 5.913 20 Si 1.069 2.931 21 H -0.292 1.292 22 H -0.288 1.288 23 H -0.292 1.292 24 C 0.111 3.889 25 C 0.050 3.950 26 O -0.388 6.388 27 C -0.148 4.148 28 C 0.523 3.477 29 O -0.527 6.527 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.404 0.596 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.029 0.971 44 H 0.270 0.730 45 H 0.025 0.975 46 H 0.064 0.936 47 H 0.084 0.916 48 H 0.045 0.955 49 H 0.111 0.889 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 6.442 -13.436 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 C -0.227 4.227 4 N -0.351 5.351 5 C -0.005 4.005 6 C -0.145 4.145 7 H 0.137 0.863 8 C 0.307 3.693 9 O -0.414 6.414 10 N -0.365 5.365 11 C 0.007 3.993 12 C 0.002 3.998 13 H 0.078 0.922 14 C 0.003 3.997 15 N -0.325 5.325 16 C -0.483 4.483 17 H 0.078 0.922 18 C -0.225 4.225 19 N -0.553 5.553 20 Si 0.899 3.101 21 H -0.218 1.218 22 H -0.215 1.215 23 H -0.220 1.220 24 C -0.015 4.015 25 C -0.028 4.028 26 O -0.308 6.308 27 C -0.189 4.189 28 C 0.310 3.690 29 O -0.404 6.404 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.238 0.762 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.102 0.898 48 H 0.063 0.937 49 H 0.129 0.871 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.753 7.782 -13.738 22.304 hybrid contribution -1.528 -1.135 0.354 1.936 sum -17.281 6.647 -13.384 22.846 Atomic orbital electron populations 1.22186 0.94624 1.02385 1.03349 1.20953 0.94437 0.93219 0.86372 1.22193 1.01486 0.95677 1.03323 1.48494 1.51151 1.29251 1.06244 1.21988 0.96532 0.86204 0.95787 1.22237 0.97583 0.98283 0.96392 0.86298 1.20005 0.88928 0.78176 0.82162 1.90733 1.41726 1.56538 1.52409 1.45939 1.16112 1.61565 1.12906 1.21455 0.85011 0.98582 0.94272 1.22891 0.93083 0.89710 0.94157 0.92201 1.21394 0.92958 0.98284 0.87069 1.44108 1.37706 1.42929 1.07789 1.20017 0.96089 1.44868 0.87314 0.92228 1.25905 0.92795 1.02043 1.01774 1.70739 1.38174 1.32478 1.13869 0.83470 0.75386 0.76527 0.74723 1.21781 1.21504 1.21951 1.21600 0.88820 0.91878 0.99250 1.23021 0.98114 0.98205 0.83477 1.87794 1.61912 1.53254 1.27810 1.22394 1.03574 0.94460 0.98454 1.20677 0.79656 0.84970 0.83654 1.90704 1.39616 1.28609 1.81446 0.90981 0.91419 0.92462 0.89296 0.92335 0.91430 0.90942 0.88999 0.89707 0.76199 0.89680 0.90496 0.89345 0.95287 0.91872 0.95667 0.91756 0.89793 0.93658 0.87097 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.20 37.16 0.34 -0.89 16 2 C 0.15 1.17 3.47 -67.94 -0.24 0.93 16 3 C -0.17 -1.36 9.20 37.16 0.34 -1.02 16 4 N -0.62 -5.51 2.83 -164.85 -0.47 -5.98 16 5 C 0.12 0.97 6.62 -3.12 -0.02 0.95 16 6 C -0.12 -1.00 3.54 -90.14 -0.32 -1.32 16 7 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 8 C 0.52 6.11 7.07 -10.98 -0.08 6.03 16 9 O -0.54 -8.27 15.57 5.56 0.09 -8.18 16 10 N -0.71 -8.46 5.45 -60.30 -0.33 -8.79 16 11 C 0.13 1.96 5.35 -4.04 -0.02 1.94 16 12 C 0.06 1.06 2.80 -26.79 -0.07 0.98 16 13 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 14 C 0.13 2.87 4.15 -3.75 -0.02 2.85 16 15 N -0.60 -14.47 2.92 -172.08 -0.50 -14.97 16 16 C -0.35 -9.54 9.54 -15.06 -0.14 -9.68 16 17 H 0.06 1.61 7.94 -52.49 -0.42 1.19 16 18 C -0.02 -0.62 4.71 -17.43 -0.08 -0.71 16 19 N -0.91 -26.57 12.44 55.49 0.69 -25.88 16 20 Si 1.07 24.56 29.99 -169.99 -5.10 19.46 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.11 2.22 6.74 -3.54 -0.02 2.20 16 25 C 0.05 0.82 6.98 37.31 0.26 1.08 16 26 O -0.39 -6.63 10.33 -35.23 -0.36 -6.99 16 27 C -0.15 -1.24 6.37 -26.73 -0.17 -1.41 16 28 C 0.52 5.62 7.41 -10.86 -0.08 5.53 16 29 O -0.53 -7.35 15.12 5.56 0.08 -7.27 16 30 H 0.07 0.70 6.80 -51.93 -0.35 0.35 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.75 6.77 -51.93 -0.35 0.40 16 37 H 0.09 0.89 7.06 -51.93 -0.37 0.53 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.09 2.17 6.44 -51.93 -0.33 1.84 16 43 H 0.03 0.68 7.75 -51.93 -0.40 0.27 16 44 H 0.27 7.94 6.61 -40.82 -0.27 7.67 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 47 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.11 0.97 7.89 -51.93 -0.41 0.56 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -33.35 396.72 -8.62 -41.96 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.37 Total: 3.18 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.32 Total: 7.48 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.61 Total: -55.62 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.19 Total: -22.45 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.10 Total: 19.46 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.35 -8.62 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035392813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.239 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds