Wall clock time and date at job start Wed Apr 1 2020 00:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47073 * 2 1 4 4 O 1.21283 * 120.00136 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99883 * 180.02562 * 3 2 1 6 6 C 1.47031 * 125.64703 * 0.02562 * 5 3 2 7 7 C 1.54324 * 107.39964 * 181.10408 * 6 5 3 8 8 C 1.55154 * 102.94617 * 22.11390 * 7 6 5 9 9 H 1.08999 * 111.00562 * 82.57350 * 8 7 6 10 10 C 1.50697 * 111.00636 * 206.38706 * 8 7 6 11 11 O 1.21284 * 119.99929 * 118.54431 * 10 8 7 12 12 N 1.34778 * 119.99981 * 298.54362 * 10 8 7 13 13 C 1.46494 * 119.99914 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47117 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.51292 * 60.10208 * 14 13 12 16 16 C 1.53303 * 109.51536 * 180.25490 * 14 13 12 17 17 N 1.47144 * 108.38452 * 172.22833 * 16 14 13 18 18 C 1.36940 * 120.98402 * 129.48852 * 17 16 14 19 19 H 1.07999 * 119.99731 * 333.71661 * 18 17 16 20 20 C 1.38815 * 119.99849 * 153.71992 * 18 17 16 21 21 N 1.31619 * 119.99800 * 160.04971 * 20 18 17 22 22 Si 1.86794 * 120.00224 * 340.04433 * 20 18 17 23 23 H 1.48492 * 109.47445 * 91.89555 * 22 20 18 24 24 H 1.48500 * 109.47076 * 211.89833 * 22 20 18 25 25 H 1.48507 * 109.47124 * 331.89241 * 22 20 18 26 26 C 1.47158 * 118.03485 * 309.46009 * 17 16 14 27 27 C 1.53293 * 108.38374 * 50.54292 * 26 17 16 28 28 O 1.42962 * 109.22089 * 307.69472 * 27 26 17 29 29 C 1.47745 * 125.82433 * 179.97438 * 5 3 2 30 30 H 1.09002 * 109.47034 * 299.99947 * 1 2 3 31 31 H 1.09007 * 109.47064 * 59.99733 * 1 2 3 32 32 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46869 * 239.99581 * 2 1 3 34 34 H 1.09000 * 109.46694 * 120.00134 * 2 1 3 35 35 H 1.08998 * 109.88167 * 61.60913 * 6 5 3 36 36 H 1.08997 * 109.88007 * 300.59204 * 6 5 3 37 37 H 1.08999 * 110.71769 * 140.47850 * 7 6 5 38 38 H 1.09003 * 110.71865 * 263.57008 * 7 6 5 39 39 H 0.97000 * 119.99982 * 0.02562 * 12 10 8 40 40 H 1.08999 * 109.47405 * 300.00207 * 13 12 10 41 41 H 1.09001 * 109.47316 * 60.00437 * 13 12 10 42 42 H 1.08999 * 109.67891 * 291.94760 * 16 14 13 43 43 H 1.08994 * 109.67753 * 52.49971 * 16 14 13 44 44 H 0.96999 * 120.00001 * 179.97438 * 21 20 18 45 45 H 1.08992 * 109.68285 * 290.81255 * 26 17 16 46 46 H 1.09003 * 109.71334 * 170.27990 * 26 17 16 47 47 H 1.09001 * 109.51694 * 187.77322 * 27 26 17 48 48 H 1.09005 * 109.55988 * 67.64414 * 27 26 17 49 49 H 1.08996 * 110.28958 * 37.02612 * 29 5 3 50 50 H 1.09002 * 110.52827 * 274.75464 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.4182 0.6489 -0.0017 7 6 5.7707 1.3916 0.0265 8 6 5.3936 2.7784 0.6111 9 1 5.3439 2.7433 1.6994 10 6 6.3601 3.8393 0.1514 11 8 5.9631 4.7767 -0.5079 12 7 7.6657 3.7465 0.4731 13 6 8.6053 4.7775 0.0257 14 6 10.0118 4.4352 0.5212 15 1 10.3153 3.4696 0.1169 16 6 10.9949 5.5169 0.0591 17 7 12.2952 5.2672 0.7010 18 6 13.4484 5.2232 -0.0361 19 1 13.4120 4.9485 -1.0799 20 6 14.6643 5.5318 0.5585 21 7 15.7884 5.1271 0.0061 22 14 14.7051 6.5212 2.1423 23 1 14.7001 5.5964 3.3041 24 1 15.9360 7.3514 2.1757 25 1 13.5117 7.4028 2.2062 26 6 12.3197 5.0666 2.1587 27 6 11.2722 4.0068 2.5185 28 8 10.0139 4.3767 1.9497 29 6 3.9887 3.0028 -0.0011 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 4.3476 0.0411 -0.9037 36 1 4.3248 0.0154 0.8804 37 1 6.4789 0.8784 0.6770 38 1 6.1766 1.4917 -0.9802 39 1 7.9832 2.9966 1.0001 40 1 8.6049 4.8217 -1.0634 41 1 8.3030 5.7441 0.4287 42 1 11.1061 5.4732 -1.0244 43 1 10.6238 6.4992 0.3512 44 1 16.6380 5.3430 0.4213 45 1 12.0821 6.0036 2.6622 46 1 13.3081 4.7250 2.4662 47 1 11.1768 3.9424 3.6025 48 1 11.5807 3.0394 2.1221 49 1 3.4125 3.6934 0.6145 50 1 4.0752 3.3842 -1.0186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035570913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:14 Heat of formation + Delta-G solvation = -90.183613 kcal Electronic energy + Delta-G solvation = -29636.692006 eV Core-core repulsion = 25471.704660 eV Total energy + Delta-G solvation = -4164.987346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.78725 -39.70655 -38.82924 -37.44991 -35.17898 -34.51836 -33.33773 -32.33948 -31.68127 -31.09835 -29.60935 -27.90444 -26.38129 -25.26397 -23.25747 -23.18771 -22.80358 -21.82815 -20.54451 -19.84448 -19.52871 -17.88152 -17.59050 -17.04264 -16.39423 -16.26085 -16.01108 -15.80900 -15.57081 -15.33327 -14.84204 -14.38471 -14.27550 -14.13755 -13.92279 -13.82147 -13.65816 -13.41849 -13.28404 -12.79111 -12.69349 -12.63773 -12.45986 -12.30103 -12.05720 -12.01331 -11.79072 -11.66876 -11.60849 -11.34743 -11.30430 -10.93992 -10.50112 -10.36301 -10.20069 -10.01517 -9.87682 -9.61402 -9.50748 -9.15469 -9.04420 -8.67045 -7.12386 -6.06181 -3.44247 2.28333 2.43027 2.48311 3.08537 3.21559 3.41018 3.43446 3.84069 3.92003 4.00759 4.29265 4.38042 4.41617 4.63143 4.64926 4.67230 4.73431 4.80383 4.85278 5.00058 5.12818 5.13750 5.23669 5.25342 5.29010 5.37281 5.42756 5.50214 5.52795 5.53984 5.64153 5.65297 5.72425 5.78763 5.79907 5.87512 5.91681 6.04058 6.10510 6.32738 6.36413 6.42430 6.61937 7.09208 7.37428 7.48619 7.76512 7.80078 8.06749 8.18959 8.76546 9.57552 9.92846 11.09276 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035415 B = 0.001837 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.426826 B =15240.001442 C =15342.526160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.526 3.474 4 O -0.538 6.538 5 N -0.624 5.624 6 C 0.101 3.899 7 C -0.123 4.123 8 C -0.125 4.125 9 H 0.113 0.887 10 C 0.524 3.476 11 O -0.539 6.539 12 N -0.716 5.716 13 C 0.130 3.870 14 C 0.063 3.937 15 H 0.065 0.935 16 C 0.124 3.876 17 N -0.607 5.607 18 C -0.264 4.264 19 H 0.089 0.911 20 C 0.025 3.975 21 N -0.906 5.906 22 Si 0.885 3.115 23 H -0.288 1.288 24 H -0.301 1.301 25 H -0.271 1.271 26 C 0.088 3.912 27 C 0.050 3.950 28 O -0.386 6.386 29 C 0.126 3.874 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.404 0.596 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.264 0.736 45 H 0.035 0.965 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.084 0.916 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.324 -14.009 2.726 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.316 3.684 4 O -0.414 6.414 5 N -0.360 5.360 6 C -0.022 4.022 7 C -0.161 4.161 8 C -0.147 4.147 9 H 0.131 0.869 10 C 0.308 3.692 11 O -0.416 6.416 12 N -0.367 5.367 13 C 0.006 3.994 14 C 0.003 3.997 15 H 0.083 0.917 16 C -0.003 4.003 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.106 0.894 20 C -0.175 4.175 21 N -0.548 5.548 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.229 1.229 25 H -0.196 1.196 26 C -0.038 4.038 27 C -0.028 4.028 28 O -0.306 6.306 29 C 0.004 3.996 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.239 0.761 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.070 0.930 49 H 0.103 0.897 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.070 -12.794 2.323 27.358 hybrid contribution 0.920 0.129 1.124 1.459 sum -23.150 -12.664 3.448 26.612 Atomic orbital electron populations 1.21549 0.92888 1.01669 1.03470 1.21619 0.98624 0.93349 1.04289 1.20505 0.80126 0.92050 0.75770 1.90730 1.54224 1.46790 1.49686 1.48642 1.05255 1.08069 1.73986 1.22055 0.86462 0.91359 1.02311 1.22677 0.96746 0.93663 1.03026 1.22454 0.94866 0.94737 1.02635 0.86880 1.20077 0.82693 0.86473 0.79921 1.90742 1.77817 1.33883 1.39138 1.45879 1.07434 1.27730 1.55628 1.21442 0.86601 0.91807 0.99558 1.22857 0.94062 1.00382 0.82386 0.91732 1.21477 0.85882 0.94933 0.97961 1.44342 1.03195 1.83472 1.02129 1.18910 0.82850 1.41391 0.96071 0.89366 1.25246 0.95134 0.98994 0.98088 1.69817 0.97419 1.46358 1.41224 0.86963 0.76720 0.81215 0.83593 1.21581 1.22941 1.19561 1.22037 0.98909 0.96720 0.86086 1.23059 0.84407 0.97913 0.97390 1.87800 1.32693 1.90716 1.19341 1.22033 0.90510 0.84614 1.02470 0.91936 0.91917 0.91961 0.88927 0.88923 0.90799 0.90796 0.88782 0.89590 0.76108 0.89850 0.90577 0.90727 0.94711 0.92601 0.94720 0.90036 0.89548 0.92983 0.89739 0.89831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.16 0.34 -0.52 16 2 C -0.14 -0.79 5.61 -27.88 -0.16 -0.95 16 3 C 0.53 5.13 7.85 -10.99 -0.09 5.05 16 4 O -0.54 -7.57 16.26 5.55 0.09 -7.48 16 5 N -0.62 -5.22 3.34 -170.28 -0.57 -5.79 16 6 C 0.10 0.48 6.48 -3.06 -0.02 0.46 16 7 C -0.12 -0.62 6.37 -24.90 -0.16 -0.78 16 8 C -0.12 -0.97 3.43 -89.64 -0.31 -1.28 16 9 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 10 C 0.52 5.88 7.16 -10.99 -0.08 5.80 16 11 O -0.54 -8.28 15.80 5.55 0.09 -8.19 16 12 N -0.72 -7.58 5.40 -60.30 -0.33 -7.91 16 13 C 0.13 1.66 5.37 -4.05 -0.02 1.64 16 14 C 0.06 0.94 2.87 -26.58 -0.08 0.86 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 16 C 0.12 2.30 6.02 -3.53 -0.02 2.28 16 17 N -0.61 -13.79 2.84 -171.83 -0.49 -14.28 16 18 C -0.26 -7.11 10.10 -15.06 -0.15 -7.26 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.02 0.69 5.26 -17.43 -0.09 0.60 16 21 N -0.91 -26.92 13.97 55.49 0.78 -26.15 16 22 Si 0.88 21.75 24.28 -169.99 -4.13 17.62 16 23 H -0.29 -6.73 6.58 56.52 0.37 -6.36 16 24 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 26 C 0.09 1.83 4.38 -3.53 -0.02 1.81 16 27 C 0.05 0.82 6.98 37.31 0.26 1.09 16 28 O -0.39 -6.11 10.13 -35.23 -0.36 -6.47 16 29 C 0.13 1.25 6.00 -2.37 -0.01 1.24 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 39 H 0.40 3.50 8.35 -40.82 -0.34 3.16 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.03 0.74 6.86 -51.93 -0.36 0.38 16 46 H 0.08 1.82 4.61 -51.93 -0.24 1.58 16 47 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.08 0.96 8.05 -51.93 -0.42 0.54 16 50 H 0.08 0.97 7.51 -51.93 -0.39 0.58 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -35.05 395.11 -8.09 -43.13 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.53 Total: -0.49 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -0.60 Total: 10.04 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.61 Total: -54.12 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.18 Total: -22.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.13 Total: 17.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.05 -8.09 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035570913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.049 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds