Wall clock time and date at job start Tue Mar 31 2020 23:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.64679 * 2 1 4 4 O 1.44671 * 110.59216 * 122.88905 * 2 1 3 5 5 C 1.44385 * 104.03523 * 156.71981 * 4 2 1 6 6 C 1.52995 * 110.21106 * 201.18738 * 5 4 2 7 7 C 1.53003 * 110.20948 * 79.27801 * 5 4 2 8 8 N 1.48014 * 105.65272 * 320.23196 * 5 4 2 9 9 C 1.48093 * 105.84234 * 24.63539 * 8 5 4 10 10 H 1.09002 * 110.38701 * 117.94280 * 9 8 5 11 11 C 1.53003 * 110.38912 * 240.20911 * 9 8 5 12 12 N 1.46499 * 109.47259 * 303.54471 * 11 9 8 13 13 C 1.34776 * 119.99955 * 179.97438 * 12 11 9 14 14 O 1.21348 * 119.99915 * 0.02562 * 13 12 11 15 15 C 1.49454 * 119.99927 * 179.97438 * 13 12 11 16 16 O 1.21347 * 119.99578 * 5.66722 * 15 13 12 17 17 N 1.34773 * 119.99810 * 185.66286 * 15 13 12 18 18 C 1.46507 * 119.99808 * 185.72904 * 17 15 13 19 19 C 1.53004 * 109.46850 * 182.84876 * 18 17 15 20 20 C 1.50702 * 115.54974 * 320.08525 * 19 18 17 21 21 H 1.08000 * 119.99830 * 95.08538 * 20 19 18 22 22 C 1.37872 * 119.99715 * 275.08325 * 20 19 18 23 23 N 1.31512 * 120.00606 * 7.75385 * 22 20 19 24 24 Si 1.86805 * 119.99831 * 187.75317 * 22 20 19 25 25 H 1.48493 * 109.47128 * 90.00077 * 24 22 20 26 26 H 1.48499 * 109.47222 * 210.00261 * 24 22 20 27 27 H 1.48502 * 109.47091 * 330.00062 * 24 22 20 28 28 C 1.52996 * 117.49262 * 174.41799 * 19 18 17 29 29 C 1.52999 * 60.03124 * 252.47549 * 28 19 18 30 30 H 1.08998 * 109.46985 * 182.88856 * 1 2 3 31 31 H 1.09001 * 109.46962 * 302.88333 * 1 2 3 32 32 H 1.08994 * 109.47431 * 62.88243 * 1 2 3 33 33 H 1.09003 * 109.47197 * 176.22644 * 6 5 4 34 34 H 1.08997 * 109.47284 * 296.22763 * 6 5 4 35 35 H 1.09000 * 109.47056 * 56.22787 * 6 5 4 36 36 H 1.08994 * 109.47187 * 303.76907 * 7 5 4 37 37 H 1.08991 * 109.46960 * 63.77426 * 7 5 4 38 38 H 1.09001 * 109.46348 * 183.77243 * 7 5 4 39 39 H 1.00903 * 110.99922 * 145.15763 * 8 5 4 40 40 H 1.09000 * 109.47003 * 183.54748 * 11 9 8 41 41 H 1.09002 * 109.46596 * 63.54669 * 11 9 8 42 42 H 0.97004 * 119.99781 * 359.97438 * 12 11 9 43 43 H 0.97002 * 120.00326 * 5.73785 * 17 15 13 44 44 H 1.09004 * 109.46610 * 62.85114 * 18 17 15 45 45 H 1.08997 * 109.47067 * 302.84886 * 18 17 15 46 46 H 0.96999 * 120.00455 * 174.98940 * 23 22 20 47 47 H 1.09001 * 117.50435 * 359.97287 * 28 19 18 48 48 H 1.09004 * 117.49545 * 144.97623 * 28 19 18 49 49 H 1.08998 * 117.50230 * 107.50058 * 29 28 19 50 50 H 1.09003 * 117.50030 * 252.52884 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 8 2.0389 -0.7354 1.1372 5 6 3.3665 -1.1325 0.7318 6 6 3.8382 -2.3267 1.5638 7 6 4.3390 0.0384 0.8873 8 7 3.2511 -1.5158 -0.6932 9 6 2.0731 -0.7850 -1.2142 10 1 2.3715 -0.1007 -2.0085 11 6 1.0196 -1.7688 -1.7274 12 7 1.6169 -2.6368 -2.7453 13 6 0.8711 -3.5879 -3.3417 14 8 -0.2952 -3.7249 -3.0358 15 6 1.4802 -4.4730 -4.3805 16 8 2.6691 -4.4054 -4.6138 17 7 0.7091 -5.3463 -5.0581 18 6 1.3234 -6.3001 -5.9850 19 6 0.2297 -7.1211 -6.6711 20 6 -0.9183 -7.5401 -5.7892 21 1 -1.8181 -6.9438 -5.7545 22 6 -0.8198 -8.6846 -5.0267 23 7 0.3251 -9.3269 -4.9496 24 14 -2.3129 -9.3229 -4.1032 25 1 -3.0664 -10.2637 -4.9705 26 1 -1.8701 -10.0292 -2.8743 27 1 -3.1890 -8.1832 -3.7306 28 6 0.6603 -8.0870 -7.7767 29 6 -0.0841 -6.7989 -8.1342 30 1 -0.3633 -1.0263 0.0518 31 1 -0.3633 0.5580 0.8630 32 1 -0.3634 0.4684 -0.9146 33 1 4.8120 -2.6585 1.2037 34 1 3.9189 -2.0315 2.6099 35 1 3.1196 -3.1410 1.4705 36 1 3.9738 0.8922 0.3167 37 1 4.4148 0.3104 1.9400 38 1 5.3213 -0.2535 0.5157 39 1 4.0854 -1.2671 -1.2032 40 1 0.1881 -1.2156 -2.1641 41 1 0.6563 -2.3769 -0.8990 42 1 2.5491 -2.5269 -2.9900 43 1 -0.2528 -5.3432 -4.9321 44 1 1.9864 -6.9669 -5.4335 45 1 1.8966 -5.7581 -6.7371 46 1 0.4145 -10.0895 -4.3568 47 1 1.7226 -8.1372 -8.0157 48 1 0.1133 -9.0256 -7.8661 49 1 0.4885 -6.0017 -8.6082 50 1 -1.1208 -6.8901 -8.4583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418834106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:15 Heat of formation + Delta-G solvation = -82.743635 kcal Electronic energy + Delta-G solvation = -30213.427578 eV Core-core repulsion = 26048.762854 eV Total energy + Delta-G solvation = -4164.664724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93021 -39.93228 -38.03303 -36.65742 -35.56175 -34.28722 -33.45195 -32.66605 -32.00276 -30.24332 -28.06697 -27.66331 -26.63807 -25.42242 -24.43934 -22.67297 -21.16727 -21.07602 -20.69277 -19.71034 -19.39557 -17.89005 -17.53587 -16.64862 -16.18077 -16.05015 -15.51049 -15.46121 -15.03237 -14.94809 -14.72360 -14.44930 -14.11073 -13.94443 -13.62508 -13.38980 -13.14082 -12.93722 -12.84953 -12.66712 -12.64616 -12.52922 -12.23856 -12.07094 -11.90842 -11.86680 -11.73785 -11.61684 -11.29686 -11.12274 -10.99887 -10.88932 -10.51084 -10.26635 -10.23911 -9.65124 -9.15764 -9.07491 -9.01860 -8.92671 -8.54500 -8.38544 -8.01252 -6.09582 -4.18785 1.96999 2.80443 3.29200 3.32047 3.36969 3.40575 3.55439 3.77595 4.09199 4.23082 4.36310 4.39147 4.45112 4.48414 4.72963 4.79765 4.98999 5.00472 5.09807 5.17545 5.20689 5.30159 5.32038 5.34727 5.43782 5.47141 5.54273 5.59138 5.66164 5.78535 5.89614 6.00612 6.05620 6.27756 6.37311 6.46062 6.49170 6.55255 6.70085 6.83698 6.91260 7.06277 7.11344 7.29843 7.40247 7.48886 7.81245 8.04389 8.31742 8.35171 8.72104 8.83911 9.49744 10.97996 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.002498 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.217752 B =11206.732296 C =11691.281753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.065 3.935 3 H 0.076 0.924 4 O -0.355 6.355 5 C 0.252 3.748 6 C -0.127 4.127 7 C -0.195 4.195 8 N -0.672 5.672 9 C 0.032 3.968 10 H 0.083 0.917 11 C 0.138 3.862 12 N -0.697 5.697 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.494 3.506 16 O -0.548 6.548 17 N -0.658 5.658 18 C 0.161 3.839 19 C 0.026 3.974 20 C -0.508 4.508 21 H 0.063 0.937 22 C 0.079 3.921 23 N -0.871 5.871 24 Si 0.890 3.110 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.271 1.271 28 C -0.150 4.150 29 C -0.210 4.210 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.352 0.648 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.411 0.589 43 H 0.417 0.583 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.262 0.738 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.066 0.934 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 20.270 9.578 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.006 3.994 3 H 0.094 0.906 4 O -0.272 6.272 5 C 0.124 3.876 6 C -0.185 4.185 7 C -0.254 4.254 8 N -0.308 5.308 9 C -0.079 4.079 10 H 0.101 0.899 11 C 0.014 3.986 12 N -0.350 5.350 13 C 0.288 3.712 14 O -0.395 6.395 15 C 0.274 3.726 16 O -0.427 6.427 17 N -0.308 5.308 18 C 0.038 3.962 19 C 0.025 3.975 20 C -0.545 4.545 21 H 0.081 0.919 22 C -0.127 4.127 23 N -0.506 5.506 24 Si 0.717 3.283 25 H -0.206 1.206 26 H -0.212 1.212 27 H -0.195 1.195 28 C -0.188 4.188 29 C -0.247 4.247 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.170 0.830 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.247 0.753 43 H 0.256 0.744 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.102 0.898 49 H 0.085 0.915 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.422 19.272 10.006 22.644 hybrid contribution -0.166 0.562 0.304 0.660 sum 6.256 19.834 10.309 23.213 Atomic orbital electron populations 1.21925 0.92128 1.04198 1.02904 1.23344 0.96652 0.95012 0.84431 0.90599 1.89410 1.28660 1.72527 1.36592 1.23069 0.83681 0.93175 0.87698 1.21616 1.01944 0.96471 0.98481 1.22816 1.00054 0.98682 1.03858 1.63062 1.06506 1.58322 1.02899 1.23200 0.92568 0.94641 0.97461 0.89879 1.21454 0.94273 0.91769 0.91113 1.45525 1.15417 1.34123 1.39984 1.20468 0.86410 0.81296 0.83030 1.90757 1.16273 1.68953 1.63556 1.19928 0.87013 0.82613 0.83084 1.90682 1.15242 1.69928 1.66894 1.45902 1.12312 1.32192 1.40428 1.21037 0.95354 0.89077 0.90752 1.19027 0.95476 0.96680 0.86278 1.20334 0.99609 1.08468 1.26091 0.91858 1.24977 0.95755 0.95947 0.95982 1.69969 1.23698 1.20543 1.36404 0.86629 0.83202 0.79284 0.79166 1.20605 1.21224 1.19542 1.22506 0.97518 0.93632 1.05160 1.23105 0.99960 0.99326 1.02304 0.90524 0.91513 0.90512 0.90895 0.91748 0.90865 0.92302 0.90809 0.90843 0.83002 0.90645 0.90362 0.75329 0.74405 0.90996 0.93690 0.92778 0.91607 0.89819 0.91533 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.47 37.16 0.31 -0.85 16 2 C 0.06 0.52 3.47 -25.97 -0.09 0.43 16 3 H 0.08 0.49 7.29 -51.93 -0.38 0.11 16 4 O -0.36 -3.69 10.91 -35.23 -0.38 -4.07 16 5 C 0.25 2.15 1.50 -67.10 -0.10 2.05 16 6 C -0.13 -1.10 9.30 37.16 0.35 -0.76 16 7 C -0.19 -1.20 8.73 37.16 0.32 -0.87 16 8 N -0.67 -5.79 6.37 -94.75 -0.60 -6.39 16 9 C 0.03 0.26 3.64 -66.29 -0.24 0.02 16 10 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 11 C 0.14 1.55 4.12 -4.04 -0.02 1.53 16 12 N -0.70 -9.50 5.41 -60.73 -0.33 -9.83 16 13 C 0.51 9.01 7.89 -11.58 -0.09 8.92 16 14 O -0.52 -10.43 16.51 5.50 0.09 -10.34 16 15 C 0.49 9.89 7.88 -11.59 -0.09 9.80 16 16 O -0.55 -11.53 16.49 5.50 0.09 -11.44 16 17 N -0.66 -14.09 5.35 -60.72 -0.32 -14.42 16 18 C 0.16 3.64 5.76 -4.04 -0.02 3.62 16 19 C 0.03 0.62 1.72 -155.62 -0.27 0.35 16 20 C -0.51 -13.14 7.40 -34.44 -0.25 -13.39 16 21 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 22 C 0.08 2.09 5.38 -17.82 -0.10 1.99 16 23 N -0.87 -24.07 12.98 55.43 0.72 -23.35 16 24 Si 0.89 20.95 29.55 -169.99 -5.02 15.93 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 C -0.15 -3.39 9.51 -26.73 -0.25 -3.65 16 29 C -0.21 -4.39 9.89 -26.70 -0.26 -4.65 16 30 H 0.08 0.70 6.49 -51.93 -0.34 0.36 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.46 7.75 -51.93 -0.40 0.06 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.33 6.97 -51.93 -0.36 -0.03 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.35 2.37 8.44 -39.29 -0.33 2.04 16 40 H 0.08 0.79 7.23 -51.93 -0.38 0.41 16 41 H 0.08 1.05 7.19 -51.93 -0.37 0.67 16 42 H 0.41 5.17 7.71 -40.82 -0.31 4.85 16 43 H 0.42 9.14 6.90 -40.82 -0.28 8.86 16 44 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 45 H 0.04 0.96 7.94 -51.93 -0.41 0.55 16 46 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 48 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 49 H 0.07 1.26 8.09 -51.93 -0.42 0.84 16 50 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 407.23 15.07 6.14 6.14 Total: -1.00 -30.65 407.23 -8.62 -39.27 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -8.18 Total: 13.96 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -0.81 Total: 4.55 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.54 Total: -53.99 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.20 Total: -25.85 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.65 -8.62 -39.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418834106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.471 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds