Wall clock time and date at job start Tue Mar 31 2020 23:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.64679 * 2 1 4 4 O 1.44671 * 110.59216 * 122.88905 * 2 1 3 5 5 C 1.44385 * 104.03523 * 156.71981 * 4 2 1 6 6 C 1.52995 * 110.21106 * 201.18738 * 5 4 2 7 7 C 1.53003 * 110.20948 * 79.27801 * 5 4 2 8 8 N 1.48014 * 105.65272 * 320.23196 * 5 4 2 9 9 C 1.48093 * 105.84234 * 24.63539 * 8 5 4 10 10 H 1.09002 * 110.38701 * 117.94280 * 9 8 5 11 11 C 1.53003 * 110.38912 * 240.20911 * 9 8 5 12 12 N 1.46499 * 109.47259 * 303.54471 * 11 9 8 13 13 C 1.34776 * 119.99955 * 179.97438 * 12 11 9 14 14 O 1.21348 * 119.99915 * 0.02562 * 13 12 11 15 15 C 1.49454 * 119.99927 * 179.97438 * 13 12 11 16 16 O 1.21347 * 119.99578 * 5.66722 * 15 13 12 17 17 N 1.34773 * 119.99810 * 185.66286 * 15 13 12 18 18 C 1.46507 * 119.99808 * 185.72904 * 17 15 13 19 19 C 1.53004 * 109.46850 * 182.84876 * 18 17 15 20 20 C 1.50702 * 115.54974 * 320.08525 * 19 18 17 21 21 H 1.08000 * 119.99830 * 95.08538 * 20 19 18 22 22 C 1.37872 * 119.99715 * 275.08325 * 20 19 18 23 23 N 1.31512 * 120.00606 * 7.75385 * 22 20 19 24 24 Si 1.86805 * 119.99831 * 187.75317 * 22 20 19 25 25 H 1.48493 * 109.47128 * 90.00077 * 24 22 20 26 26 H 1.48499 * 109.47222 * 210.00261 * 24 22 20 27 27 H 1.48502 * 109.47091 * 330.00062 * 24 22 20 28 28 C 1.52996 * 117.49262 * 174.41799 * 19 18 17 29 29 C 1.52999 * 60.03124 * 252.47549 * 28 19 18 30 30 H 1.08998 * 109.46985 * 182.88856 * 1 2 3 31 31 H 1.09001 * 109.46962 * 302.88333 * 1 2 3 32 32 H 1.08994 * 109.47431 * 62.88243 * 1 2 3 33 33 H 1.09003 * 109.47197 * 176.22644 * 6 5 4 34 34 H 1.08997 * 109.47284 * 296.22763 * 6 5 4 35 35 H 1.09000 * 109.47056 * 56.22787 * 6 5 4 36 36 H 1.08994 * 109.47187 * 303.76907 * 7 5 4 37 37 H 1.08991 * 109.46960 * 63.77426 * 7 5 4 38 38 H 1.09001 * 109.46348 * 183.77243 * 7 5 4 39 39 H 1.00903 * 110.99922 * 145.15763 * 8 5 4 40 40 H 1.09000 * 109.47003 * 183.54748 * 11 9 8 41 41 H 1.09002 * 109.46596 * 63.54669 * 11 9 8 42 42 H 0.97004 * 119.99781 * 359.97438 * 12 11 9 43 43 H 0.97002 * 120.00326 * 5.73785 * 17 15 13 44 44 H 1.09004 * 109.46610 * 62.85114 * 18 17 15 45 45 H 1.08997 * 109.47067 * 302.84886 * 18 17 15 46 46 H 0.96999 * 120.00455 * 174.98940 * 23 22 20 47 47 H 1.09001 * 117.50435 * 359.97287 * 28 19 18 48 48 H 1.09004 * 117.49545 * 144.97623 * 28 19 18 49 49 H 1.08998 * 117.50230 * 107.50058 * 29 28 19 50 50 H 1.09003 * 117.50030 * 252.52884 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 8 2.0389 -0.7354 1.1372 5 6 3.3665 -1.1325 0.7318 6 6 3.8382 -2.3267 1.5638 7 6 4.3390 0.0384 0.8873 8 7 3.2511 -1.5158 -0.6932 9 6 2.0731 -0.7850 -1.2142 10 1 2.3715 -0.1007 -2.0085 11 6 1.0196 -1.7688 -1.7274 12 7 1.6169 -2.6368 -2.7453 13 6 0.8711 -3.5879 -3.3417 14 8 -0.2952 -3.7249 -3.0358 15 6 1.4802 -4.4730 -4.3805 16 8 2.6691 -4.4054 -4.6138 17 7 0.7091 -5.3463 -5.0581 18 6 1.3234 -6.3001 -5.9850 19 6 0.2297 -7.1211 -6.6711 20 6 -0.9183 -7.5401 -5.7892 21 1 -1.8181 -6.9438 -5.7545 22 6 -0.8198 -8.6846 -5.0267 23 7 0.3251 -9.3269 -4.9496 24 14 -2.3129 -9.3229 -4.1032 25 1 -3.0664 -10.2637 -4.9705 26 1 -1.8701 -10.0292 -2.8743 27 1 -3.1890 -8.1832 -3.7306 28 6 0.6603 -8.0870 -7.7767 29 6 -0.0841 -6.7989 -8.1342 30 1 -0.3633 -1.0263 0.0518 31 1 -0.3633 0.5580 0.8630 32 1 -0.3634 0.4684 -0.9146 33 1 4.8120 -2.6585 1.2037 34 1 3.9189 -2.0315 2.6099 35 1 3.1196 -3.1410 1.4705 36 1 3.9738 0.8922 0.3167 37 1 4.4148 0.3104 1.9400 38 1 5.3213 -0.2535 0.5157 39 1 4.0854 -1.2671 -1.2032 40 1 0.1881 -1.2156 -2.1641 41 1 0.6563 -2.3769 -0.8990 42 1 2.5491 -2.5269 -2.9900 43 1 -0.2528 -5.3432 -4.9321 44 1 1.9864 -6.9669 -5.4335 45 1 1.8966 -5.7581 -6.7371 46 1 0.4145 -10.0895 -4.3568 47 1 1.7226 -8.1372 -8.0157 48 1 0.1133 -9.0256 -7.8661 49 1 0.4885 -6.0017 -8.6082 50 1 -1.1208 -6.8901 -8.4583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000418834106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:14 Heat of formation + Delta-G solvation = -107.335694 kcal Electronic energy + Delta-G solvation = -30214.493970 eV Core-core repulsion = 26048.762854 eV Total energy + Delta-G solvation = -4165.731116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78688 -41.25110 -39.57940 -38.42800 -36.63828 -35.03862 -34.88085 -34.01320 -33.73246 -30.85409 -29.19367 -28.41346 -28.03381 -27.33614 -25.32687 -23.96668 -22.90831 -21.81227 -21.48261 -21.42616 -20.88540 -19.36225 -18.35212 -18.00692 -17.72057 -17.20391 -16.92373 -16.59975 -16.40380 -16.08955 -15.94340 -15.85195 -15.38749 -15.11633 -14.85164 -14.62941 -14.36810 -14.06498 -13.91431 -13.66971 -13.56074 -13.51839 -13.26293 -13.23970 -12.96785 -12.88510 -12.81337 -12.72386 -12.70124 -12.52013 -12.37932 -12.36908 -12.00171 -11.91334 -11.47713 -10.95346 -10.87739 -10.63526 -10.46993 -10.25123 -10.15715 -9.80073 -9.72494 -8.12564 -6.25032 0.45012 1.40599 1.44054 1.45488 1.52149 2.24238 2.41593 2.63321 2.82688 2.98060 3.16729 3.45233 3.53758 3.60298 3.69380 3.86765 3.89746 4.09472 4.23526 4.24101 4.35435 4.48021 4.50202 4.51758 4.66366 4.67081 4.70285 4.71596 4.78167 4.81713 4.84559 4.99034 4.99329 5.02310 5.04299 5.15783 5.21066 5.26613 5.28054 5.36529 5.37840 5.55253 5.65694 5.75995 5.91809 6.08055 6.35656 6.37397 6.55776 6.82555 6.86983 7.08210 7.45267 8.94404 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.002498 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.217752 B =11206.732296 C =11691.281753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.064 3.936 3 H 0.101 0.899 4 O -0.383 6.383 5 C 0.247 3.753 6 C -0.128 4.128 7 C -0.186 4.186 8 N -0.688 5.688 9 C 0.039 3.961 10 H 0.113 0.887 11 C 0.136 3.864 12 N -0.674 5.674 13 C 0.509 3.491 14 O -0.548 6.548 15 C 0.494 3.506 16 O -0.558 6.558 17 N -0.665 5.665 18 C 0.174 3.826 19 C -0.001 4.001 20 C -0.510 4.510 21 H 0.060 0.940 22 C 0.035 3.965 23 N -0.899 5.899 24 Si 0.941 3.059 25 H -0.275 1.275 26 H -0.290 1.290 27 H -0.269 1.269 28 C -0.155 4.155 29 C -0.181 4.181 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.364 0.636 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.418 0.582 43 H 0.415 0.585 44 H 0.040 0.960 45 H 0.059 0.941 46 H 0.260 0.740 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.093 0.907 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 22.714 9.289 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.006 3.994 3 H 0.118 0.882 4 O -0.300 6.300 5 C 0.119 3.881 6 C -0.186 4.186 7 C -0.245 4.245 8 N -0.326 5.326 9 C -0.072 4.072 10 H 0.131 0.869 11 C 0.013 3.987 12 N -0.326 5.326 13 C 0.289 3.711 14 O -0.426 6.426 15 C 0.274 3.726 16 O -0.438 6.438 17 N -0.315 5.315 18 C 0.050 3.950 19 C -0.002 4.002 20 C -0.548 4.548 21 H 0.078 0.922 22 C -0.167 4.167 23 N -0.536 5.536 24 Si 0.768 3.232 25 H -0.201 1.201 26 H -0.216 1.216 27 H -0.193 1.193 28 C -0.193 4.193 29 C -0.218 4.218 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.183 0.817 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.256 0.744 43 H 0.253 0.747 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.111 0.889 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.929 21.754 9.721 24.814 hybrid contribution -0.283 -0.161 0.416 0.529 sum 6.646 21.593 10.137 24.763 Atomic orbital electron populations 1.21947 0.92210 1.02988 1.04076 1.23507 0.96691 0.95767 0.83452 0.88164 1.89389 1.29745 1.73118 1.37798 1.23183 0.83643 0.93881 0.87353 1.21636 1.01661 0.96011 0.99320 1.22726 0.99915 0.97768 1.04117 1.62946 1.07233 1.59082 1.03293 1.23170 0.91592 0.94020 0.98417 0.86874 1.21655 0.95835 0.91621 0.89591 1.45493 1.15390 1.32677 1.39064 1.20070 0.86221 0.81846 0.82921 1.90750 1.17298 1.69985 1.64526 1.20326 0.86790 0.82415 0.83032 1.90666 1.15658 1.70290 1.67233 1.45870 1.12205 1.32493 1.40895 1.20774 0.94690 0.88815 0.90705 1.19102 0.95573 0.98158 0.87380 1.20578 1.00104 1.08112 1.25987 0.92237 1.25590 0.97638 0.96431 0.97049 1.70068 1.25136 1.21031 1.37365 0.85814 0.80694 0.78692 0.78003 1.20098 1.21602 1.19335 1.22443 0.98215 0.93444 1.05233 1.23113 1.00310 0.98650 0.99715 0.92801 0.91106 0.88704 0.89851 0.91072 0.93636 0.91343 0.90861 0.89519 0.81669 0.89442 0.92784 0.74435 0.74745 0.94200 0.92251 0.93117 0.90473 0.91836 0.88875 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.47 71.98 0.61 -1.51 16 2 C 0.06 0.89 3.47 31.09 0.11 1.00 16 3 H 0.10 0.93 7.29 -2.39 -0.02 0.92 16 4 O -0.38 -7.56 10.91 -148.98 -1.63 -9.18 16 5 C 0.25 3.86 1.50 44.70 0.07 3.92 16 6 C -0.13 -2.18 9.30 71.98 0.67 -1.51 16 7 C -0.19 -1.80 8.73 71.98 0.63 -1.17 16 8 N -0.69 -10.59 6.37 -552.25 -3.52 -14.11 16 9 C 0.04 0.54 3.64 45.18 0.16 0.71 16 10 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 11 C 0.14 2.90 4.12 86.38 0.36 3.25 16 12 N -0.67 -17.59 5.41 -464.40 -2.51 -20.10 16 13 C 0.51 17.90 7.89 87.27 0.69 18.59 16 14 O -0.55 -22.00 16.51 -3.24 -0.05 -22.05 16 15 C 0.49 19.63 7.88 87.27 0.69 20.31 16 16 O -0.56 -23.13 16.49 -3.24 -0.05 -23.18 16 17 N -0.66 -28.51 5.35 -464.39 -2.48 -30.99 16 18 C 0.17 7.86 5.76 86.38 0.50 8.35 16 19 C 0.00 -0.07 1.72 -52.90 -0.09 -0.16 16 20 C -0.51 -26.47 7.40 25.60 0.19 -26.28 16 21 H 0.06 3.07 7.83 -2.91 -0.02 3.04 16 22 C 0.03 1.87 5.38 84.65 0.46 2.33 16 23 N -0.90 -50.58 12.98 21.44 0.28 -50.30 16 24 Si 0.94 43.38 29.55 68.60 2.03 45.41 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 C -0.16 -6.94 9.51 30.59 0.29 -6.65 16 29 C -0.18 -7.22 9.89 30.62 0.30 -6.92 16 30 H 0.05 0.99 6.49 -2.39 -0.02 0.97 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 0.92 7.75 -2.39 -0.02 0.90 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 0.54 6.97 -2.39 -0.02 0.52 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.36 3.95 8.44 -89.69 -0.76 3.19 16 40 H 0.09 1.69 7.23 -2.39 -0.02 1.67 16 41 H 0.05 1.46 7.19 -2.39 -0.02 1.44 16 42 H 0.42 9.78 7.71 -92.71 -0.71 9.07 16 43 H 0.41 18.29 6.90 -92.71 -0.64 17.65 16 44 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.06 2.47 7.94 -2.39 -0.02 2.45 16 46 H 0.26 14.17 8.32 -92.71 -0.77 13.39 16 47 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 48 H 0.06 3.07 8.14 -2.38 -0.02 3.05 16 49 H 0.09 3.23 8.09 -2.39 -0.02 3.22 16 50 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -66.39 407.23 -3.45 -69.85 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: -1.14 Total: 40.39 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 5.62 Total: 14.27 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -8.23 Total: -115.49 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -1.73 Total: -54.42 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.39 -3.45 -69.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418834106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.489 kcal (2) G-P(sol) polarization free energy of solvation -66.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds