Wall clock time and date at job start Tue Mar 31 2020 23:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.64345 * 2 1 4 4 C 1.55154 * 110.86985 * 236.75029 * 2 1 3 5 5 C 1.55128 * 101.48855 * 205.89756 * 4 2 1 6 6 N 1.47422 * 104.72049 * 37.29605 * 5 4 2 7 7 C 1.34780 * 125.65045 * 155.81576 * 6 5 4 8 8 O 1.21343 * 120.00245 * 179.69604 * 7 6 5 9 9 C 1.49452 * 119.99646 * 359.69794 * 7 6 5 10 10 O 1.21352 * 120.00244 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00041 * 180.02562 * 9 7 6 12 12 C 1.46492 * 120.00307 * 180.02562 * 11 9 7 13 13 C 1.53039 * 109.46127 * 204.99786 * 12 11 9 14 14 C 1.53196 * 109.31372 * 178.60960 * 13 12 11 15 15 N 1.46926 * 108.77334 * 54.63684 * 14 13 12 16 16 C 1.36934 * 120.63074 * 126.37100 * 15 14 13 17 17 H 1.08006 * 119.99957 * 332.23703 * 16 15 14 18 18 C 1.38813 * 119.99951 * 152.24462 * 16 15 14 19 19 N 1.31618 * 119.99594 * 143.92225 * 18 16 15 20 20 Si 1.86790 * 119.99948 * 323.92218 * 18 16 15 21 21 H 1.48505 * 109.47349 * 269.99809 * 20 18 16 22 22 H 1.48497 * 109.47339 * 30.00293 * 20 18 16 23 23 H 1.48506 * 109.47100 * 150.00107 * 20 18 16 24 24 C 1.46928 * 118.73707 * 306.63898 * 15 14 13 25 25 C 1.52763 * 109.00698 * 53.31570 * 24 15 14 26 26 C 1.47019 * 108.70496 * 335.55660 * 6 5 4 27 27 H 1.09001 * 109.88537 * 241.86632 * 26 6 5 28 28 C 1.52995 * 109.88427 * 120.85451 * 26 6 5 29 29 O 1.42897 * 109.47387 * 66.45645 * 28 26 6 30 30 H 1.09001 * 109.47016 * 296.85524 * 1 2 3 31 31 H 1.08996 * 109.47183 * 56.85889 * 1 2 3 32 32 H 1.09006 * 109.47304 * 176.85788 * 1 2 3 33 33 H 1.08999 * 111.00845 * 324.13644 * 4 2 1 34 34 H 1.09005 * 111.00155 * 87.95813 * 4 2 1 35 35 H 1.09007 * 110.49773 * 278.45959 * 5 4 2 36 36 H 1.08997 * 110.34849 * 156.06345 * 5 4 2 37 37 H 0.97007 * 119.99750 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.45891 * 324.96799 * 12 11 9 39 39 H 1.09001 * 109.49851 * 58.66144 * 13 12 11 40 40 H 1.08999 * 109.49802 * 298.56322 * 13 12 11 41 41 H 1.08991 * 109.58873 * 294.84734 * 14 13 12 42 42 H 1.09005 * 109.58690 * 174.42190 * 14 13 12 43 43 H 0.96994 * 120.00634 * 354.92332 * 19 18 16 44 44 H 1.08999 * 109.58378 * 173.14479 * 24 15 14 45 45 H 1.08996 * 109.58807 * 293.57524 * 24 15 14 46 46 H 1.09000 * 109.56664 * 185.55589 * 25 24 15 47 47 H 1.08997 * 109.36234 * 65.49327 * 25 24 15 48 48 H 1.09008 * 109.47313 * 186.45458 * 28 26 6 49 49 H 1.09003 * 109.47684 * 306.45559 * 28 26 6 50 50 H 0.96700 * 114.00986 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0827 -0.7949 -1.2124 5 6 3.4706 -1.2413 -0.6824 6 7 3.2471 -1.5462 0.7426 7 6 3.9957 -2.3768 1.4950 8 8 3.7213 -2.5494 2.6644 9 6 5.1638 -3.0853 0.8891 10 8 5.4380 -2.9131 -0.2804 11 7 5.9122 -3.9163 1.6414 12 6 7.0575 -4.6104 1.0477 13 6 7.3421 -5.8910 1.8357 14 6 8.5181 -6.6317 1.1913 15 7 9.6615 -5.7136 1.0986 16 6 10.8801 -6.0623 1.6168 17 1 10.9366 -6.7482 2.4493 18 6 12.0426 -5.5342 1.0723 19 7 13.0608 -5.2409 1.8532 20 14 12.1620 -5.2399 -0.7684 21 1 12.6999 -6.4557 -1.4302 22 1 10.8128 -4.9373 -1.3098 23 1 13.0685 -4.0927 -1.0285 24 6 9.4709 -4.4118 0.4446 25 6 8.2856 -3.6983 1.0924 26 6 2.0760 -0.7892 1.2086 27 1 2.3712 -0.0993 1.9991 28 6 1.0080 -1.7523 1.7307 29 8 1.4883 -2.4029 2.9089 30 1 -0.3633 0.4642 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3634 -1.0262 -0.0563 33 1 1.4514 -1.6547 -1.4366 34 1 2.1880 -0.1516 -2.0861 35 1 4.1970 -0.4355 -0.7885 36 1 3.8102 -2.1314 -1.2120 37 1 5.6927 -4.0543 2.5762 38 1 6.8314 -4.8640 0.0120 39 1 6.4590 -6.5299 1.8230 40 1 7.5927 -5.6364 2.8655 41 1 8.2364 -6.9664 0.1931 42 1 8.7886 -7.4914 1.8044 43 1 12.9737 -5.3241 2.8156 44 1 10.3698 -3.8073 0.5651 45 1 9.2683 -4.5618 -0.6158 46 1 8.0740 -2.7764 0.5507 47 1 8.5274 -3.4644 2.1292 48 1 0.1011 -1.1956 1.9672 49 1 0.7876 -2.4989 0.9677 50 1 0.8614 -3.0293 3.2958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588125986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:40 Heat of formation + Delta-G solvation = -107.179693 kcal Electronic energy + Delta-G solvation = -30926.328386 eV Core-core repulsion = 26760.604035 eV Total energy + Delta-G solvation = -4165.724351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.98954 -40.62522 -39.23800 -38.68657 -37.13238 -36.22861 -34.31829 -33.92295 -31.98324 -31.74618 -31.32286 -28.69400 -26.98220 -25.73476 -25.09041 -24.34939 -23.68166 -22.77021 -21.53342 -20.93342 -20.08344 -19.45651 -18.91975 -18.18636 -17.99709 -17.35954 -17.16829 -16.52419 -16.31900 -16.06783 -15.89956 -15.56572 -15.34259 -15.11243 -14.90156 -14.72744 -14.45622 -14.21114 -14.13282 -13.94330 -13.90804 -13.73343 -13.45096 -13.25370 -13.02130 -12.68155 -12.55012 -12.45270 -12.37749 -12.17034 -11.96851 -11.90363 -11.71182 -11.63101 -11.51186 -11.38722 -11.19520 -10.79447 -10.51057 -10.39352 -10.23696 -9.74231 -9.03930 -8.58888 -5.43357 0.41605 1.23779 1.53687 1.56714 1.76559 2.18867 2.45168 2.60282 2.94287 3.19957 3.30346 3.45826 3.56140 3.68223 3.74356 3.89539 3.92107 4.18855 4.19857 4.27454 4.29873 4.39721 4.42684 4.51635 4.54596 4.59672 4.64740 4.69472 4.80090 4.83783 4.85794 4.92943 4.94373 4.99634 5.04577 5.06458 5.13271 5.15485 5.16867 5.29323 5.34956 5.40038 5.41847 5.85504 6.04738 6.27549 6.30875 6.72203 6.89777 6.94620 7.01300 7.62570 8.13336 8.79415 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023531 B = 0.002490 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.637835 B =11240.815578 C =11918.263233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.101 0.899 4 C -0.121 4.121 5 C 0.089 3.911 6 N -0.590 5.590 7 C 0.509 3.491 8 O -0.502 6.502 9 C 0.506 3.494 10 O -0.537 6.537 11 N -0.686 5.686 12 C 0.161 3.839 13 C -0.127 4.127 14 C 0.143 3.857 15 N -0.614 5.614 16 C -0.349 4.349 17 H 0.033 0.967 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 1.060 2.940 21 H -0.294 1.294 22 H -0.238 1.238 23 H -0.300 1.300 24 C 0.144 3.856 25 C -0.135 4.135 26 C 0.131 3.869 27 H 0.067 0.933 28 C 0.063 3.937 29 O -0.569 6.569 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.415 0.585 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.061 0.939 41 H 0.040 0.960 42 H 0.059 0.941 43 H 0.253 0.747 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.064 0.936 47 H 0.052 0.948 48 H 0.083 0.917 49 H 0.046 0.954 50 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.409 10.540 -5.783 34.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.119 0.881 4 C -0.159 4.159 5 C -0.033 4.033 6 N -0.326 5.326 7 C 0.291 3.709 8 O -0.376 6.376 9 C 0.287 3.713 10 O -0.415 6.415 11 N -0.338 5.338 12 C 0.057 3.943 13 C -0.167 4.167 14 C 0.017 3.983 15 N -0.339 5.339 16 C -0.478 4.478 17 H 0.050 0.950 18 C -0.247 4.247 19 N -0.575 5.575 20 Si 0.885 3.115 21 H -0.222 1.222 22 H -0.163 1.163 23 H -0.227 1.227 24 C 0.018 3.982 25 C -0.175 4.175 26 C 0.028 3.972 27 H 0.085 0.915 28 C -0.016 4.016 29 O -0.375 6.375 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.252 0.748 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.064 0.936 50 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -30.774 11.330 -7.217 33.578 hybrid contribution -0.599 -1.088 2.346 2.654 sum -31.373 10.242 -4.871 33.360 Atomic orbital electron populations 1.21877 0.91894 1.02924 1.03390 1.22240 0.97790 0.99148 0.91504 0.88097 1.22998 0.93781 1.00882 0.98217 1.22814 0.98984 1.02098 0.79376 1.48387 1.28733 1.42878 1.12572 1.19763 0.83724 0.81061 0.86336 1.90830 1.68775 1.62277 1.15733 1.20354 0.83961 0.80559 0.86469 1.90691 1.70860 1.63333 1.16593 1.45949 1.28820 1.43862 1.15131 1.20890 0.83455 0.91671 0.98274 1.22177 0.99567 0.95527 0.99420 1.21071 0.86452 0.92263 0.98492 1.44455 1.07242 1.13518 1.68671 1.19896 0.85065 1.30585 1.12234 0.94960 1.27166 0.91714 0.97305 1.08496 1.70998 1.36566 1.44749 1.05185 0.84053 0.77629 0.76040 0.73764 1.22186 1.16271 1.22690 1.21265 0.95796 0.86033 0.95078 1.22245 0.95615 0.98575 1.01059 1.21964 0.84788 0.92611 0.97832 0.91538 1.22778 0.96136 0.95063 0.87580 1.86915 1.46395 1.61273 1.42920 0.91445 0.90343 0.91843 0.89946 0.87236 0.91132 0.89616 0.74843 0.89631 0.88806 0.92060 0.94163 0.92295 0.93800 0.93670 0.93978 0.91748 0.92966 0.89939 0.93558 0.77165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 7.95 71.98 0.57 -0.11 16 2 C -0.09 -0.79 3.46 -9.60 -0.03 -0.82 16 3 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -1.17 6.55 32.06 0.21 -0.96 16 5 C 0.09 1.60 6.08 86.93 0.53 2.13 16 6 N -0.59 -13.09 3.08 -789.18 -2.43 -15.52 16 7 C 0.51 14.28 7.66 87.27 0.67 14.95 16 8 O -0.50 -15.91 13.56 20.14 0.27 -15.63 16 9 C 0.51 14.89 7.82 87.27 0.68 15.57 16 10 O -0.54 -17.22 13.44 -3.25 -0.04 -17.26 16 11 N -0.69 -19.43 5.07 -443.75 -2.25 -21.68 16 12 C 0.16 5.05 2.42 45.02 0.11 5.16 16 13 C -0.13 -3.88 5.55 30.67 0.17 -3.71 16 14 C 0.14 5.38 6.52 86.36 0.56 5.94 16 15 N -0.61 -28.93 2.72 -699.92 -1.90 -30.83 16 16 C -0.35 -19.77 9.70 84.03 0.82 -18.96 16 17 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 18 C -0.05 -2.86 4.82 84.86 0.41 -2.45 16 19 N -0.94 -59.30 13.70 21.65 0.30 -59.00 16 20 Si 1.06 51.74 27.01 68.60 1.85 53.59 16 21 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.24 -10.35 4.73 99.48 0.47 -9.88 16 23 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 24 C 0.14 6.25 4.34 86.22 0.37 6.62 16 25 C -0.13 -4.95 5.64 30.53 0.17 -4.77 16 26 C 0.13 2.19 3.26 45.34 0.15 2.34 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 C 0.06 0.93 5.36 71.98 0.39 1.32 16 29 O -0.57 -11.97 10.17 -125.62 -1.28 -13.25 16 30 H 0.07 0.27 7.57 -2.39 -0.02 0.26 16 31 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.06 0.30 6.73 -2.38 -0.02 0.29 16 33 H 0.08 0.75 8.03 -2.39 -0.02 0.73 16 34 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.09 1.86 6.14 -2.39 -0.01 1.85 16 37 H 0.41 10.89 8.07 -92.70 -0.75 10.14 16 38 H 0.09 2.78 7.58 -2.39 -0.02 2.76 16 39 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 2.26 7.93 -2.38 -0.02 2.24 16 43 H 0.25 16.15 8.73 -92.71 -0.81 15.34 16 44 H 0.04 2.16 5.83 -2.39 -0.01 2.15 16 45 H 0.04 1.76 6.60 -2.39 -0.02 1.74 16 46 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.08 0.77 6.37 -2.38 -0.02 0.75 16 49 H 0.05 0.66 7.81 -2.39 -0.02 0.64 16 50 H 0.38 4.90 9.12 -74.06 -0.68 4.22 16 Total: -1.00 -75.28 380.79 -0.44 -75.72 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.74 Total: 21.63 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 5.77 Total: 22.24 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -6.28 Total: -127.03 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.05 Total: -46.15 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 1.85 Total: 53.59 kcal Total: -75.28 -0.44 -75.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.464 kcal (2) G-P(sol) polarization free energy of solvation -75.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds