Wall clock time and date at job start Tue Mar 31 2020 23:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.64155 * 2 1 4 4 C 1.55156 * 110.71860 * 123.14377 * 2 1 3 5 5 C 1.54915 * 101.57840 * 154.04042 * 4 2 1 6 6 N 1.47425 * 104.83165 * 322.98576 * 5 4 2 7 7 C 1.34781 * 125.64624 * 204.09180 * 6 5 4 8 8 O 1.21346 * 119.99709 * 180.02562 * 7 6 5 9 9 C 1.49449 * 120.00101 * 0.03024 * 7 6 5 10 10 O 1.21346 * 120.00012 * 359.97438 * 9 7 6 11 11 N 1.34772 * 119.99840 * 180.02562 * 9 7 6 12 12 C 1.46505 * 119.99958 * 180.02562 * 11 9 7 13 13 C 1.53032 * 109.46181 * 154.99754 * 12 11 9 14 14 C 1.53194 * 109.31260 * 181.38342 * 13 12 11 15 15 N 1.46926 * 108.77186 * 305.36012 * 14 13 12 16 16 C 1.36939 * 120.62747 * 233.58348 * 15 14 13 17 17 H 1.08000 * 120.00159 * 25.20526 * 16 15 14 18 18 C 1.38819 * 119.99763 * 205.20118 * 16 15 14 19 19 N 1.31612 * 119.99798 * 202.59164 * 18 16 15 20 20 Si 1.86801 * 119.99845 * 22.59464 * 18 16 15 21 21 H 1.48495 * 109.47088 * 264.61036 * 20 18 16 22 22 H 1.48493 * 109.47094 * 24.61357 * 20 18 16 23 23 H 1.48506 * 109.46740 * 144.61070 * 20 18 16 24 24 C 1.46924 * 118.73892 * 53.86166 * 15 14 13 25 25 C 1.53050 * 109.45354 * 275.06080 * 12 11 9 26 26 C 1.47020 * 108.70180 * 24.36316 * 6 5 4 27 27 H 1.08997 * 109.87667 * 239.29214 * 26 6 5 28 28 C 1.53001 * 109.88427 * 118.12790 * 26 6 5 29 29 O 1.42903 * 109.47210 * 66.45046 * 28 26 6 30 30 H 1.09000 * 109.47116 * 298.31457 * 1 2 3 31 31 H 1.08999 * 109.47164 * 58.30754 * 1 2 3 32 32 H 1.08997 * 109.47414 * 178.31211 * 1 2 3 33 33 H 1.09002 * 111.00411 * 35.96874 * 4 2 1 34 34 H 1.08997 * 111.03966 * 272.12474 * 4 2 1 35 35 H 1.09005 * 110.36495 * 204.15131 * 5 4 2 36 36 H 1.08993 * 110.46229 * 81.87935 * 5 4 2 37 37 H 0.96997 * 120.00342 * 359.97438 * 11 9 7 38 38 H 1.08992 * 109.46198 * 35.01527 * 12 11 9 39 39 H 1.08996 * 109.50263 * 61.42983 * 13 12 11 40 40 H 1.09006 * 109.49410 * 301.33089 * 13 12 11 41 41 H 1.09006 * 109.58756 * 185.57333 * 14 13 12 42 42 H 1.09000 * 109.58812 * 65.14874 * 14 13 12 43 43 H 0.97004 * 120.00185 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58551 * 65.92916 * 24 15 14 45 45 H 1.08996 * 109.58461 * 186.34766 * 24 15 14 46 46 H 1.08993 * 109.49982 * 298.56380 * 25 12 11 47 47 H 1.09001 * 109.49455 * 58.66517 * 25 12 11 48 48 H 1.08995 * 109.47173 * 186.44969 * 28 26 6 49 49 H 1.08998 * 109.46781 * 306.44965 * 28 26 6 50 50 H 0.96692 * 114.00013 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7934 1.2151 5 6 3.4651 -1.2448 0.6912 6 7 3.2493 -1.5471 -0.7355 7 6 4.0003 -2.3787 -1.4845 8 8 3.7293 -2.5529 -2.6545 9 6 5.1666 -3.0862 -0.8743 10 8 5.4379 -2.9117 0.2955 11 7 5.9179 -3.9173 -1.6235 12 6 7.0610 -4.6113 -1.0251 13 6 7.3486 -5.8921 -1.8118 14 6 8.5222 -6.6325 -1.1627 15 7 9.6651 -5.7144 -1.0659 16 6 10.8859 -6.0636 -1.5786 17 1 10.9485 -6.7817 -2.3829 18 6 12.0431 -5.4946 -1.0646 19 7 13.1386 -5.4591 -1.7931 20 14 12.0453 -4.7794 0.6611 21 1 11.7910 -3.3180 0.5916 22 1 10.9811 -5.4292 1.4675 23 1 13.3656 -5.0226 1.2960 24 6 9.4749 -4.4170 -0.4031 25 6 8.2893 -3.6991 -1.0655 26 6 2.0830 -0.7864 -1.2074 27 1 1.3215 -1.4701 -1.5823 28 6 2.5065 0.1826 -2.3131 29 8 2.9221 -0.5583 -3.4623 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5399 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 1.4468 -1.6530 1.4383 34 1 2.1821 -0.1496 2.0886 35 1 3.7992 -2.1365 1.2216 36 1 4.1944 -0.4424 0.8029 37 1 5.7013 -4.0565 -2.5587 38 1 6.8309 -4.8646 0.0097 39 1 7.6032 -5.6378 -2.8406 40 1 6.4654 -6.5309 -1.8023 41 1 8.7950 -7.4925 -1.7746 42 1 8.2366 -6.9670 -0.1654 43 1 13.9474 -5.0618 -1.4338 44 1 9.2655 -4.5745 0.6550 45 1 10.3766 -3.8147 -0.5135 46 1 8.5350 -3.4655 -2.1014 47 1 8.0756 -2.7771 -0.5248 48 1 1.6645 0.8219 -2.5781 49 1 3.3333 0.7986 -1.9594 50 1 3.2054 -0.0069 -4.2044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588125987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:45 Heat of formation + Delta-G solvation = -84.323109 kcal Electronic energy + Delta-G solvation = -30894.429027 eV Core-core repulsion = 26729.695811 eV Total energy + Delta-G solvation = -4164.733216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.94600 -39.50739 -37.93620 -37.46131 -36.45875 -34.74712 -33.20383 -32.15048 -30.67079 -30.41209 -30.17053 -28.40735 -25.75297 -24.42085 -24.01014 -22.89605 -22.46895 -21.49858 -20.63789 -20.05776 -19.27709 -17.71186 -17.32651 -17.15759 -16.76615 -16.52056 -15.83902 -15.49127 -15.05546 -14.76726 -14.43485 -14.28259 -14.14207 -14.07075 -13.76631 -13.68145 -13.48928 -13.14857 -12.95003 -12.91219 -12.61393 -12.37684 -12.16966 -12.00873 -11.96479 -11.80711 -11.64644 -11.32007 -11.20520 -11.04460 -10.93916 -10.84236 -10.62103 -10.19172 -10.16758 -10.04882 -9.93324 -9.48725 -9.31279 -8.95665 -8.81367 -8.61975 -7.03102 -5.94721 -3.28120 1.55951 2.26514 3.32275 3.34662 3.47103 3.50760 3.53795 3.75659 4.03587 4.30121 4.43584 4.54138 4.59238 4.77524 4.87567 4.91125 4.93916 4.97645 5.05171 5.10231 5.12888 5.24223 5.28069 5.39323 5.43812 5.52307 5.57957 5.62469 5.66061 5.69857 5.80282 5.85983 5.99524 6.01634 6.06120 6.13509 6.27711 6.37582 6.55317 6.59179 6.64368 6.66743 6.89561 7.10056 7.38679 7.48474 7.82910 7.93590 8.12150 8.31926 8.93053 9.72253 10.08494 11.20921 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002528 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.454404 B =11073.286003 C =11471.649473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.131 4.131 5 C 0.096 3.904 6 N -0.593 5.593 7 C 0.514 3.486 8 O -0.481 6.481 9 C 0.506 3.494 10 O -0.523 6.523 11 N -0.692 5.692 12 C 0.149 3.851 13 C -0.142 4.142 14 C 0.153 3.847 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.087 0.913 18 C 0.022 3.978 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.289 1.289 22 H -0.269 1.269 23 H -0.303 1.303 24 C 0.130 3.870 25 C -0.141 4.141 26 C 0.142 3.858 27 H 0.085 0.915 28 C 0.064 3.936 29 O -0.539 6.539 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.409 0.591 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.262 0.738 44 H 0.029 0.971 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.052 0.948 49 H 0.044 0.956 50 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.966 12.524 3.039 29.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.169 4.169 5 C -0.026 4.026 6 N -0.330 5.330 7 C 0.297 3.703 8 O -0.353 6.353 9 C 0.286 3.714 10 O -0.400 6.400 11 N -0.343 5.343 12 C 0.046 3.954 13 C -0.181 4.181 14 C 0.026 3.974 15 N -0.330 5.330 16 C -0.388 4.388 17 H 0.105 0.895 18 C -0.177 4.177 19 N -0.549 5.549 20 Si 0.709 3.291 21 H -0.217 1.217 22 H -0.194 1.194 23 H -0.231 1.231 24 C 0.004 3.996 25 C -0.182 4.182 26 C 0.039 3.961 27 H 0.103 0.897 28 C -0.015 4.015 29 O -0.342 6.342 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.245 0.755 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.062 0.938 50 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -26.805 11.965 3.533 29.566 hybrid contribution 0.224 1.107 0.193 1.145 sum -26.581 13.072 3.726 29.855 Atomic orbital electron populations 1.21769 0.93307 1.02532 1.02335 1.22204 0.96582 0.99466 0.93545 0.89411 1.22953 0.96171 1.00388 0.97401 1.22643 0.96660 1.02869 0.80463 1.48230 1.29466 1.43539 1.11755 1.19928 0.83727 0.80475 0.86218 1.90832 1.69052 1.60661 1.14721 1.20092 0.83747 0.80829 0.86691 1.90695 1.70428 1.62886 1.16006 1.46112 1.29410 1.43961 1.14823 1.21149 0.83951 0.92114 0.98140 1.22359 0.99758 0.95453 1.00579 1.20860 0.86426 0.92500 0.97618 1.44434 1.07877 1.12718 1.67964 1.18925 0.81364 1.25378 1.13165 0.89505 1.25226 0.95239 0.99151 0.98037 1.69859 1.02252 1.46929 1.35849 0.87006 0.76267 0.78277 0.87545 1.21702 1.19416 1.23140 1.21387 0.96320 0.87453 0.94453 1.22486 0.95367 0.98062 1.02240 1.21740 0.87992 0.93024 0.93356 0.89705 1.22551 0.98116 0.93457 0.87413 1.86923 1.87499 1.35414 1.24397 0.91692 0.92233 0.92106 0.90283 0.89445 0.87889 0.91168 0.75530 0.89552 0.91064 0.91905 0.91203 0.95627 0.92783 0.95312 0.90682 0.91347 0.92369 0.93028 0.93760 0.78550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.16 37.16 0.34 -0.30 16 2 C -0.10 -0.59 3.07 -88.78 -0.27 -0.86 16 3 H 0.09 0.45 7.84 -51.93 -0.41 0.04 16 4 C -0.13 -0.84 6.53 -24.58 -0.16 -1.00 16 5 C 0.10 0.93 6.06 -2.53 -0.02 0.92 16 6 N -0.59 -6.88 3.06 -163.51 -0.50 -7.38 16 7 C 0.51 7.35 7.65 -11.58 -0.09 7.26 16 8 O -0.48 -7.69 13.77 -18.59 -0.26 -7.95 16 9 C 0.51 7.66 7.82 -11.59 -0.09 7.57 16 10 O -0.52 -8.67 13.44 5.50 0.07 -8.60 16 11 N -0.69 -10.14 5.07 -54.20 -0.27 -10.41 16 12 C 0.15 2.45 2.41 -67.89 -0.16 2.28 16 13 C -0.14 -2.24 5.55 -26.61 -0.15 -2.39 16 14 C 0.15 2.92 6.51 -3.71 -0.02 2.89 16 15 N -0.61 -14.32 2.79 -172.05 -0.48 -14.80 16 16 C -0.26 -7.24 10.05 -15.06 -0.15 -7.39 16 17 H 0.09 2.55 8.04 -52.49 -0.42 2.13 16 18 C 0.02 0.65 5.21 -17.43 -0.09 0.56 16 19 N -0.91 -27.84 13.97 55.49 0.78 -27.06 16 20 Si 0.88 22.56 24.36 -169.99 -4.14 18.41 16 21 H -0.29 -7.23 6.68 56.52 0.38 -6.85 16 22 H -0.27 -6.78 6.54 56.52 0.37 -6.41 16 23 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 24 C 0.13 2.90 4.23 -3.49 -0.01 2.88 16 25 C -0.14 -2.65 5.67 -26.38 -0.15 -2.80 16 26 C 0.14 1.30 2.90 -66.95 -0.19 1.11 16 27 H 0.08 0.87 7.80 -51.93 -0.41 0.46 16 28 C 0.06 0.56 6.47 37.16 0.24 0.80 16 29 O -0.54 -6.07 10.34 -59.33 -0.61 -6.69 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 33 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 34 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 1.17 6.16 -51.93 -0.32 0.85 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.41 5.52 8.07 -40.82 -0.33 5.19 16 38 H 0.09 1.50 7.58 -51.93 -0.39 1.10 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.31 7.92 -51.93 -0.41 0.90 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.03 0.64 7.08 -51.93 -0.37 0.27 16 45 H 0.08 1.84 4.36 -51.93 -0.23 1.61 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.37 2.68 9.12 45.56 0.42 3.10 16 LS Contribution 384.45 15.07 5.79 5.79 Total: -1.00 -34.34 384.45 -8.16 -42.49 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.55 Total: 4.65 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -0.98 Total: 11.54 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.48 Total: -59.66 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.80 Total: -23.23 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.34 -8.16 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.830 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds