Wall clock time and date at job start Tue Mar 31 2020 23:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.64155 * 2 1 4 4 C 1.55156 * 110.71860 * 123.14377 * 2 1 3 5 5 C 1.54915 * 101.57840 * 154.04042 * 4 2 1 6 6 N 1.47425 * 104.83165 * 322.98576 * 5 4 2 7 7 C 1.34781 * 125.64624 * 204.09180 * 6 5 4 8 8 O 1.21346 * 119.99709 * 180.02562 * 7 6 5 9 9 C 1.49449 * 120.00101 * 0.03024 * 7 6 5 10 10 O 1.21346 * 120.00012 * 359.97438 * 9 7 6 11 11 N 1.34772 * 119.99840 * 180.02562 * 9 7 6 12 12 C 1.46505 * 119.99958 * 180.02562 * 11 9 7 13 13 C 1.53032 * 109.46181 * 154.99754 * 12 11 9 14 14 C 1.53194 * 109.31260 * 181.38342 * 13 12 11 15 15 N 1.46926 * 108.77186 * 305.36012 * 14 13 12 16 16 C 1.36939 * 120.62747 * 233.58348 * 15 14 13 17 17 H 1.08000 * 120.00159 * 25.20526 * 16 15 14 18 18 C 1.38819 * 119.99763 * 205.20118 * 16 15 14 19 19 N 1.31612 * 119.99798 * 202.59164 * 18 16 15 20 20 Si 1.86801 * 119.99845 * 22.59464 * 18 16 15 21 21 H 1.48495 * 109.47088 * 264.61036 * 20 18 16 22 22 H 1.48493 * 109.47094 * 24.61357 * 20 18 16 23 23 H 1.48506 * 109.46740 * 144.61070 * 20 18 16 24 24 C 1.46924 * 118.73892 * 53.86166 * 15 14 13 25 25 C 1.53050 * 109.45354 * 275.06080 * 12 11 9 26 26 C 1.47020 * 108.70180 * 24.36316 * 6 5 4 27 27 H 1.08997 * 109.87667 * 239.29214 * 26 6 5 28 28 C 1.53001 * 109.88427 * 118.12790 * 26 6 5 29 29 O 1.42903 * 109.47210 * 66.45046 * 28 26 6 30 30 H 1.09000 * 109.47116 * 298.31457 * 1 2 3 31 31 H 1.08999 * 109.47164 * 58.30754 * 1 2 3 32 32 H 1.08997 * 109.47414 * 178.31211 * 1 2 3 33 33 H 1.09002 * 111.00411 * 35.96874 * 4 2 1 34 34 H 1.08997 * 111.03966 * 272.12474 * 4 2 1 35 35 H 1.09005 * 110.36495 * 204.15131 * 5 4 2 36 36 H 1.08993 * 110.46229 * 81.87935 * 5 4 2 37 37 H 0.96997 * 120.00342 * 359.97438 * 11 9 7 38 38 H 1.08992 * 109.46198 * 35.01527 * 12 11 9 39 39 H 1.08996 * 109.50263 * 61.42983 * 13 12 11 40 40 H 1.09006 * 109.49410 * 301.33089 * 13 12 11 41 41 H 1.09006 * 109.58756 * 185.57333 * 14 13 12 42 42 H 1.09000 * 109.58812 * 65.14874 * 14 13 12 43 43 H 0.97004 * 120.00185 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58551 * 65.92916 * 24 15 14 45 45 H 1.08996 * 109.58461 * 186.34766 * 24 15 14 46 46 H 1.08993 * 109.49982 * 298.56380 * 25 12 11 47 47 H 1.09001 * 109.49455 * 58.66517 * 25 12 11 48 48 H 1.08995 * 109.47173 * 186.44969 * 28 26 6 49 49 H 1.08998 * 109.46781 * 306.44965 * 28 26 6 50 50 H 0.96692 * 114.00013 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0789 -0.7934 1.2151 5 6 3.4651 -1.2448 0.6912 6 7 3.2493 -1.5471 -0.7355 7 6 4.0003 -2.3787 -1.4845 8 8 3.7293 -2.5529 -2.6545 9 6 5.1666 -3.0862 -0.8743 10 8 5.4379 -2.9117 0.2955 11 7 5.9179 -3.9173 -1.6235 12 6 7.0610 -4.6113 -1.0251 13 6 7.3486 -5.8921 -1.8118 14 6 8.5222 -6.6325 -1.1627 15 7 9.6651 -5.7144 -1.0659 16 6 10.8859 -6.0636 -1.5786 17 1 10.9485 -6.7817 -2.3829 18 6 12.0431 -5.4946 -1.0646 19 7 13.1386 -5.4591 -1.7931 20 14 12.0453 -4.7794 0.6611 21 1 11.7910 -3.3180 0.5916 22 1 10.9811 -5.4292 1.4675 23 1 13.3656 -5.0226 1.2960 24 6 9.4749 -4.4170 -0.4031 25 6 8.2893 -3.6991 -1.0655 26 6 2.0830 -0.7864 -1.2074 27 1 1.3215 -1.4701 -1.5823 28 6 2.5065 0.1826 -2.3131 29 8 2.9221 -0.5583 -3.4623 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5399 -0.8744 32 1 -0.3634 -1.0272 -0.0303 33 1 1.4468 -1.6530 1.4383 34 1 2.1821 -0.1496 2.0886 35 1 3.7992 -2.1365 1.2216 36 1 4.1944 -0.4424 0.8029 37 1 5.7013 -4.0565 -2.5587 38 1 6.8309 -4.8646 0.0097 39 1 7.6032 -5.6378 -2.8406 40 1 6.4654 -6.5309 -1.8023 41 1 8.7950 -7.4925 -1.7746 42 1 8.2366 -6.9670 -0.1654 43 1 13.9474 -5.0618 -1.4338 44 1 9.2655 -4.5745 0.6550 45 1 10.3766 -3.8147 -0.5135 46 1 8.5350 -3.4655 -2.1014 47 1 8.0756 -2.7771 -0.5248 48 1 1.6645 0.8219 -2.5781 49 1 3.3333 0.7986 -1.9594 50 1 3.2054 -0.0069 -4.2044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588125987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:44 Heat of formation + Delta-G solvation = -110.072367 kcal Electronic energy + Delta-G solvation = -30895.545598 eV Core-core repulsion = 26729.695811 eV Total energy + Delta-G solvation = -4165.849787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96486 -40.57140 -39.23096 -38.67012 -37.21399 -36.23583 -34.19196 -33.82054 -31.99803 -31.87633 -31.34388 -29.07896 -27.28618 -25.65503 -24.78054 -24.49231 -23.71717 -22.65685 -21.55078 -21.27594 -20.44753 -18.98149 -18.51331 -18.15938 -18.04979 -17.58771 -17.29685 -16.63051 -16.45801 -15.98299 -15.63317 -15.42135 -15.37142 -15.23252 -14.96925 -14.73254 -14.55992 -14.32525 -14.14428 -14.05321 -13.88417 -13.71454 -13.45982 -13.31236 -12.80009 -12.72299 -12.64814 -12.61492 -12.48295 -12.26418 -12.03570 -11.92019 -11.79189 -11.69730 -11.56377 -11.50940 -11.45806 -10.89949 -10.79837 -10.44284 -10.22701 -9.74746 -9.01475 -8.17151 -5.46182 0.41660 1.23754 1.29347 1.40429 1.48976 2.19212 2.40744 2.45073 3.01987 3.16151 3.26417 3.35479 3.55051 3.72904 3.74550 3.87213 4.01456 4.13419 4.16745 4.24169 4.27036 4.40075 4.41206 4.42169 4.51840 4.55530 4.60440 4.63699 4.76516 4.83847 4.88623 4.90330 4.95413 4.96616 5.04332 5.05372 5.10362 5.12749 5.17189 5.27992 5.33631 5.39924 5.43235 5.84517 6.05063 6.12055 6.31082 6.72748 6.88968 6.91341 7.00277 7.60983 8.00785 9.02262 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002528 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.454404 B =11073.286003 C =11471.649473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.103 0.897 4 C -0.122 4.122 5 C 0.090 3.910 6 N -0.591 5.591 7 C 0.511 3.489 8 O -0.504 6.504 9 C 0.505 3.495 10 O -0.538 6.538 11 N -0.685 5.685 12 C 0.159 3.841 13 C -0.129 4.129 14 C 0.146 3.854 15 N -0.620 5.620 16 C -0.245 4.245 17 H 0.060 0.940 18 C -0.036 4.036 19 N -0.954 5.954 20 Si 0.939 3.061 21 H -0.281 1.281 22 H -0.259 1.259 23 H -0.310 1.310 24 C 0.127 3.873 25 C -0.131 4.131 26 C 0.133 3.867 27 H 0.072 0.928 28 C 0.062 3.938 29 O -0.569 6.569 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.416 0.584 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.261 0.739 44 H 0.035 0.965 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.044 0.956 50 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.103 13.949 4.399 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.121 0.879 4 C -0.159 4.159 5 C -0.032 4.032 6 N -0.326 5.326 7 C 0.293 3.707 8 O -0.379 6.379 9 C 0.286 3.714 10 O -0.416 6.416 11 N -0.336 5.336 12 C 0.056 3.944 13 C -0.168 4.168 14 C 0.021 3.979 15 N -0.344 5.344 16 C -0.375 4.375 17 H 0.078 0.922 18 C -0.230 4.230 19 N -0.600 5.600 20 Si 0.768 3.232 21 H -0.208 1.208 22 H -0.184 1.184 23 H -0.239 1.239 24 C 0.001 3.999 25 C -0.171 4.171 26 C 0.031 3.969 27 H 0.090 0.910 28 C -0.017 4.017 29 O -0.375 6.375 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.062 0.938 50 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -30.019 13.414 4.913 33.245 hybrid contribution 1.113 0.652 -0.272 1.318 sum -28.907 14.067 4.641 32.481 Atomic orbital electron populations 1.21763 0.91944 1.02474 1.03456 1.22227 0.97507 0.99514 0.91450 0.87861 1.22953 0.93821 1.00916 0.98254 1.22751 0.98920 1.02113 0.79381 1.48388 1.29293 1.42481 1.12423 1.19746 0.83803 0.81043 0.86128 1.90822 1.69729 1.61821 1.15490 1.20352 0.83958 0.80579 0.86475 1.90692 1.70918 1.63358 1.16644 1.45929 1.28765 1.43804 1.15144 1.20906 0.83432 0.91821 0.98286 1.22197 0.99566 0.95317 0.99708 1.21085 0.85872 0.92216 0.98752 1.44563 1.07648 1.14188 1.68033 1.18907 0.83175 1.23546 1.11839 0.92231 1.25814 0.95135 1.00866 1.01219 1.69976 1.03053 1.49544 1.37433 0.86024 0.75885 0.78114 0.83159 1.20827 1.18370 1.23919 1.21369 0.96702 0.86847 0.94958 1.22319 0.95139 0.98344 1.01313 1.22056 0.86755 0.93080 0.95032 0.90995 1.22674 0.99100 0.93321 0.86593 1.86879 1.87825 1.37145 1.25624 0.90160 0.91565 0.92766 0.90153 0.87092 0.89710 0.91097 0.74678 0.89813 0.91363 0.88517 0.91230 0.94163 0.93004 0.94731 0.93128 0.92100 0.91924 0.90245 0.93764 0.77013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.16 71.98 0.66 -0.16 16 2 C -0.09 -0.79 3.07 -9.60 -0.03 -0.82 16 3 H 0.10 0.66 7.84 -2.39 -0.02 0.64 16 4 C -0.12 -1.22 6.53 31.99 0.21 -1.01 16 5 C 0.09 1.61 6.06 86.86 0.53 2.14 16 6 N -0.59 -13.00 3.06 -789.59 -2.42 -15.42 16 7 C 0.51 14.20 7.65 87.27 0.67 14.87 16 8 O -0.50 -15.85 13.77 19.81 0.27 -15.58 16 9 C 0.51 14.74 7.82 87.27 0.68 15.42 16 10 O -0.54 -17.22 13.44 -3.23 -0.04 -17.27 16 11 N -0.68 -18.99 5.07 -443.75 -2.25 -21.25 16 12 C 0.16 4.91 2.41 45.02 0.11 5.02 16 13 C -0.13 -3.76 5.55 30.67 0.17 -3.59 16 14 C 0.15 5.33 6.51 86.36 0.56 5.89 16 15 N -0.62 -28.91 2.79 -698.25 -1.95 -30.86 16 16 C -0.25 -13.83 10.05 84.03 0.84 -12.99 16 17 H 0.06 3.62 8.04 -2.91 -0.02 3.60 16 18 C -0.04 -2.10 5.21 84.86 0.44 -1.65 16 19 N -0.95 -60.32 13.97 21.65 0.30 -60.02 16 20 Si 0.94 47.26 24.36 68.60 1.67 48.93 16 21 H -0.28 -13.62 6.68 99.48 0.66 -12.95 16 22 H -0.26 -12.47 6.54 99.48 0.65 -11.82 16 23 H -0.31 -15.84 7.11 99.48 0.71 -15.13 16 24 C 0.13 5.53 4.23 86.51 0.37 5.90 16 25 C -0.13 -4.75 5.67 30.82 0.17 -4.58 16 26 C 0.13 2.21 2.90 45.35 0.13 2.34 16 27 H 0.07 1.39 7.80 -2.39 -0.02 1.37 16 28 C 0.06 0.96 6.47 71.98 0.47 1.42 16 29 O -0.57 -12.28 10.34 -125.94 -1.30 -13.59 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.07 0.32 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.41 8.11 -2.39 -0.02 0.39 16 33 H 0.08 0.81 8.05 -2.39 -0.02 0.79 16 34 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 1.85 6.16 -2.38 -0.01 1.84 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.42 10.58 8.07 -92.71 -0.75 9.83 16 38 H 0.08 2.70 7.58 -2.39 -0.02 2.68 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.07 2.53 7.92 -2.38 -0.02 2.51 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.03 1.48 7.08 -2.39 -0.02 1.46 16 45 H 0.05 2.45 4.36 -2.39 -0.01 2.44 16 46 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.38 5.25 9.12 -74.06 -0.68 4.58 16 Total: -1.00 -75.41 384.45 -0.30 -75.71 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.56 Total: 21.12 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 5.98 Total: 28.21 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -6.32 Total: -127.55 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.07 Total: -46.43 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.67 Total: 48.93 kcal Total: -75.41 -0.30 -75.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.365 kcal (2) G-P(sol) polarization free energy of solvation -75.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds