Wall clock time and date at job start Tue Mar 31 2020 23:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.51447 * 2 1 4 4 O 1.42966 * 109.51045 * 120.10260 * 2 1 3 5 5 C 1.42962 * 114.16469 * 182.50461 * 4 2 1 6 6 C 1.53303 * 109.22324 * 297.41789 * 5 4 2 7 7 N 1.47148 * 108.38228 * 52.30443 * 6 5 4 8 8 C 1.34781 * 120.98187 * 129.44454 * 7 6 5 9 9 O 1.21346 * 120.00076 * 186.64522 * 8 7 6 10 10 C 1.49443 * 119.99815 * 6.64125 * 8 7 6 11 11 O 1.21348 * 120.00152 * 6.16898 * 10 8 7 12 12 N 1.34777 * 119.99922 * 186.16148 * 10 8 7 13 13 C 1.46505 * 120.00130 * 180.02562 * 12 10 8 14 14 C 1.53037 * 109.46070 * 275.03284 * 13 12 10 15 15 C 1.53191 * 109.31336 * 178.60154 * 14 13 12 16 16 N 1.46925 * 108.76685 * 54.65121 * 15 14 13 17 17 C 1.36941 * 120.62831 * 126.40392 * 16 15 14 18 18 H 1.07998 * 120.00297 * 331.69431 * 17 16 15 19 19 C 1.38816 * 119.99369 * 151.68833 * 17 16 15 20 20 N 1.31619 * 120.00206 * 344.52748 * 19 17 16 21 21 Si 1.86804 * 119.99455 * 164.53162 * 19 17 16 22 22 H 1.48501 * 109.47406 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47016 * 119.99874 * 21 19 17 24 24 H 1.48497 * 109.46730 * 239.99679 * 21 19 17 25 25 C 1.46920 * 118.73963 * 306.39037 * 16 15 14 26 26 C 1.53037 * 109.46133 * 154.97495 * 13 12 10 27 27 C 1.47153 * 118.03652 * 309.46328 * 7 6 5 28 28 H 1.08996 * 109.68657 * 290.81161 * 27 7 6 29 29 C 1.53009 * 109.71181 * 170.27705 * 27 7 6 30 30 H 1.08996 * 109.47395 * 299.90129 * 1 2 3 31 31 H 1.09001 * 109.46909 * 59.89390 * 1 2 3 32 32 H 1.08997 * 109.47641 * 179.89533 * 1 2 3 33 33 H 1.09001 * 109.51014 * 177.49865 * 5 4 2 34 34 H 1.08990 * 109.51659 * 57.34567 * 5 4 2 35 35 H 1.08991 * 109.68232 * 172.02851 * 6 5 4 36 36 H 1.08996 * 109.67894 * 292.58048 * 6 5 4 37 37 H 0.96996 * 119.99968 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.45653 * 35.00016 * 13 12 10 39 39 H 1.09007 * 109.49930 * 298.56514 * 14 13 12 40 40 H 1.09001 * 109.50240 * 58.66093 * 14 13 12 41 41 H 1.08995 * 109.59601 * 294.86209 * 15 14 13 42 42 H 1.09003 * 109.70583 * 174.50487 * 15 14 13 43 43 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.58558 * 293.81696 * 25 16 15 45 45 H 1.08996 * 109.70527 * 173.46474 * 25 16 15 46 46 H 1.09005 * 109.49683 * 301.34215 * 26 13 12 47 47 H 1.09001 * 109.49613 * 61.43366 * 26 13 12 48 48 H 1.08999 * 109.47164 * 306.17445 * 29 27 7 49 49 H 1.08999 * 109.46832 * 66.17466 * 29 27 7 50 50 H 1.08996 * 109.46601 * 186.17552 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0074 -0.6759 1.1658 5 6 3.4312 -0.6850 1.2951 6 6 4.0406 -1.4459 0.1120 7 7 3.5012 -0.8768 -1.1331 8 6 4.3194 -0.5044 -2.1374 9 8 3.8686 0.0726 -3.1050 10 6 5.7818 -0.8020 -2.0590 11 8 6.2159 -1.4755 -1.1477 12 7 6.6185 -0.3225 -3.0006 13 6 8.0520 -0.6148 -2.9241 14 6 8.7322 0.4054 -2.0083 15 6 10.2245 0.0759 -1.9030 16 7 10.7906 0.0093 -3.2571 17 6 11.8890 0.7555 -3.5916 18 1 12.0801 1.6913 -3.0875 19 6 12.7571 0.3089 -4.5786 20 7 12.7113 -0.9446 -4.9772 21 14 13.9902 1.4871 -5.3407 22 1 13.8392 2.8293 -4.7235 23 1 15.3672 0.9844 -5.1029 24 1 13.7441 1.5841 -6.8019 25 6 10.1560 -0.8733 -4.2455 26 6 8.6644 -0.5334 -4.3243 27 6 2.0420 -0.7258 -1.2494 28 1 1.5757 -1.7084 -1.3201 29 6 1.7058 0.0949 -2.4962 30 1 -0.3634 0.5123 0.8908 31 1 -0.3633 0.5155 -0.8890 32 1 -0.3634 -1.0276 -0.0019 33 1 3.7090 -1.1778 2.2268 34 1 3.8029 0.3396 1.2995 35 1 5.1251 -1.3377 0.1254 36 1 3.7756 -2.5010 0.1785 37 1 6.2715 0.2160 -3.7289 38 1 8.1972 -1.6174 -2.5219 39 1 8.6087 1.4059 -2.4230 40 1 8.2797 0.3634 -1.0175 41 1 10.3524 -0.8856 -1.4058 42 1 10.7331 0.8529 -1.3321 43 1 13.3176 -1.2566 -5.6672 44 1 10.2783 -1.9123 -3.9394 45 1 10.6170 -0.7234 -5.2217 46 1 8.1635 -1.2437 -4.9822 47 1 8.5415 0.4759 -4.7170 48 1 2.2534 1.0370 -2.4696 49 1 1.9894 -0.4652 -3.3872 50 1 0.6351 0.2976 -2.5198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588126028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:23 Heat of formation + Delta-G solvation = -63.383536 kcal Electronic energy + Delta-G solvation = -30913.375446 eV Core-core repulsion = 26749.550239 eV Total energy + Delta-G solvation = -4163.825207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.37792 -39.68409 -38.48423 -37.48877 -35.44204 -34.53951 -34.05563 -32.19873 -30.26794 -29.69069 -29.36934 -29.08075 -25.97371 -25.06870 -23.71485 -23.20101 -22.34428 -21.88330 -21.02608 -20.13359 -19.21581 -17.86669 -16.99410 -16.96988 -16.64748 -16.30803 -15.94134 -15.78015 -15.39089 -14.91416 -14.80593 -14.46587 -14.18050 -13.83769 -13.62226 -13.48762 -13.35547 -13.21104 -13.05853 -12.82273 -12.64081 -12.48153 -12.32798 -12.14653 -11.89504 -11.54179 -11.42676 -11.19649 -11.10264 -10.94602 -10.78395 -10.66218 -10.50959 -10.49754 -10.34427 -10.09631 -9.85144 -9.67294 -9.06239 -8.94019 -8.80041 -8.51825 -6.73737 -5.83726 -3.27291 1.31946 2.12078 3.10235 3.24965 3.34467 3.41438 3.42637 3.44603 4.17443 4.31193 4.45616 4.55464 4.59607 4.69303 4.84900 4.93131 5.05033 5.14772 5.21603 5.23076 5.33642 5.41076 5.43390 5.46561 5.47424 5.51071 5.66760 5.67728 5.74785 5.80732 5.90409 5.98207 6.15115 6.21273 6.25961 6.40882 6.44112 6.50433 6.67795 6.73226 6.78918 6.82646 6.90629 7.24068 7.26221 7.57940 7.65822 7.75639 7.98629 8.40175 9.16194 9.78769 10.35099 11.25077 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029477 B = 0.002248 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.650934 B =12454.708255 C =12826.430928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.077 3.923 3 H 0.064 0.936 4 O -0.380 6.380 5 C 0.048 3.952 6 C 0.037 3.963 7 N -0.586 5.586 8 C 0.510 3.490 9 O -0.514 6.514 10 C 0.503 3.497 11 O -0.518 6.518 12 N -0.686 5.686 13 C 0.147 3.853 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.174 3.826 26 C -0.148 4.148 27 C 0.111 3.889 28 H 0.083 0.917 29 C -0.141 4.141 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.152 0.848 36 H 0.077 0.923 37 H 0.409 0.591 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.254 0.746 44 H 0.022 0.978 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.388 0.564 8.621 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.082 0.918 4 O -0.299 6.299 5 C -0.030 4.030 6 C -0.085 4.085 7 N -0.321 5.321 8 C 0.293 3.707 9 O -0.390 6.390 10 C 0.283 3.717 11 O -0.397 6.397 12 N -0.336 5.336 13 C 0.045 3.955 14 C -0.180 4.180 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.381 4.381 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.047 3.953 26 C -0.188 4.188 27 C 0.009 3.991 28 H 0.101 0.899 29 C -0.198 4.198 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.244 0.756 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.096 0.904 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.291 0.239 8.739 24.878 hybrid contribution 0.609 0.756 -0.869 1.303 sum -22.681 0.995 7.870 24.029 Atomic orbital electron populations 1.21795 0.92069 1.03310 1.03005 1.22546 0.95732 0.95321 0.84538 0.91828 1.87955 1.21368 1.77423 1.43115 1.23071 0.80724 1.00335 0.98839 1.23578 1.04973 0.98021 0.81908 1.48032 1.06288 1.61310 1.16429 1.20314 0.87608 0.79649 0.83086 1.90802 1.75994 1.39637 1.32553 1.20140 0.87048 0.81102 0.83369 1.90476 1.77515 1.38961 1.32708 1.46272 1.08816 1.51515 1.26986 1.21280 0.75988 1.00023 0.98246 1.22404 0.98735 0.98686 0.98153 1.20867 0.90087 0.98565 0.88374 1.44106 1.31370 1.50730 1.05360 1.19236 1.00100 0.99696 1.19112 0.91547 1.25081 0.97555 0.95506 1.01548 1.70010 1.39481 1.13257 1.32088 0.86204 0.80905 0.80503 0.79041 1.20255 1.21687 1.21545 1.20772 0.85841 0.92294 0.96345 1.22579 1.00950 1.01709 0.93545 1.22162 0.79235 1.00651 0.97080 0.89865 1.22242 1.00046 1.01373 0.96113 0.91346 0.90449 0.91515 0.87284 0.92703 0.83121 0.90447 0.75569 0.89464 0.92048 0.92655 0.96065 0.92378 0.93592 0.96006 0.88675 0.92474 0.91888 0.90840 0.90448 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.38 37.16 0.35 -0.57 16 2 C 0.08 0.67 2.85 -26.58 -0.08 0.59 16 3 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 4 O -0.38 -3.77 10.38 -35.23 -0.37 -4.14 16 5 C 0.05 0.42 6.99 37.31 0.26 0.68 16 6 C 0.04 0.37 6.17 -3.53 -0.02 0.35 16 7 N -0.59 -6.59 3.02 -165.25 -0.50 -7.09 16 8 C 0.51 6.62 7.67 -11.59 -0.09 6.53 16 9 O -0.51 -7.09 12.04 5.50 0.07 -7.03 16 10 C 0.50 7.11 7.73 -11.59 -0.09 7.02 16 11 O -0.52 -8.01 12.83 5.50 0.07 -7.94 16 12 N -0.69 -9.70 5.07 -54.20 -0.27 -9.98 16 13 C 0.15 2.43 2.42 -67.89 -0.16 2.27 16 14 C -0.14 -2.40 5.65 -26.61 -0.15 -2.55 16 15 C 0.15 3.04 6.52 -3.71 -0.02 3.01 16 16 N -0.59 -14.38 2.99 -172.33 -0.52 -14.89 16 17 C -0.25 -6.73 9.59 -15.06 -0.14 -6.88 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 19 C 0.00 0.04 4.96 -17.43 -0.09 -0.04 16 20 N -0.90 -25.63 11.11 55.49 0.62 -25.01 16 21 Si 0.90 21.28 29.58 -169.99 -5.03 16.25 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.17 3.97 5.29 -3.72 -0.02 3.95 16 26 C -0.15 -2.63 5.55 -26.62 -0.15 -2.78 16 27 C 0.11 1.06 3.12 -67.42 -0.21 0.85 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 C -0.14 -1.33 7.52 37.16 0.28 -1.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.39 6.61 -51.93 -0.34 0.05 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.15 1.76 4.40 -54.51 -0.24 1.52 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.41 5.29 8.09 -40.82 -0.33 4.96 16 38 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 39 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.10 2.43 6.02 -51.93 -0.31 2.12 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.07 0.80 6.81 -51.93 -0.35 0.45 16 49 H 0.08 0.85 6.78 -51.93 -0.35 0.50 16 50 H 0.05 0.38 6.50 -51.93 -0.34 0.04 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -29.80 382.49 -8.62 -38.42 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -8.12 Total: 4.24 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -0.33 Total: 11.40 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.67 Total: -56.97 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.23 Total: -19.10 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.80 -8.62 -38.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.966 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds