Wall clock time and date at job start Tue Mar 31 2020 23:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.51447 * 2 1 4 4 O 1.42966 * 109.51045 * 120.10260 * 2 1 3 5 5 C 1.42962 * 114.16469 * 182.50461 * 4 2 1 6 6 C 1.53303 * 109.22324 * 297.41789 * 5 4 2 7 7 N 1.47148 * 108.38228 * 52.30443 * 6 5 4 8 8 C 1.34781 * 120.98187 * 129.44454 * 7 6 5 9 9 O 1.21346 * 120.00076 * 186.64522 * 8 7 6 10 10 C 1.49443 * 119.99815 * 6.64125 * 8 7 6 11 11 O 1.21348 * 120.00152 * 6.16898 * 10 8 7 12 12 N 1.34777 * 119.99922 * 186.16148 * 10 8 7 13 13 C 1.46505 * 120.00130 * 180.02562 * 12 10 8 14 14 C 1.53037 * 109.46070 * 275.03284 * 13 12 10 15 15 C 1.53191 * 109.31336 * 178.60154 * 14 13 12 16 16 N 1.46925 * 108.76685 * 54.65121 * 15 14 13 17 17 C 1.36941 * 120.62831 * 126.40392 * 16 15 14 18 18 H 1.07998 * 120.00297 * 331.69431 * 17 16 15 19 19 C 1.38816 * 119.99369 * 151.68833 * 17 16 15 20 20 N 1.31619 * 120.00206 * 344.52748 * 19 17 16 21 21 Si 1.86804 * 119.99455 * 164.53162 * 19 17 16 22 22 H 1.48501 * 109.47406 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47016 * 119.99874 * 21 19 17 24 24 H 1.48497 * 109.46730 * 239.99679 * 21 19 17 25 25 C 1.46920 * 118.73963 * 306.39037 * 16 15 14 26 26 C 1.53037 * 109.46133 * 154.97495 * 13 12 10 27 27 C 1.47153 * 118.03652 * 309.46328 * 7 6 5 28 28 H 1.08996 * 109.68657 * 290.81161 * 27 7 6 29 29 C 1.53009 * 109.71181 * 170.27705 * 27 7 6 30 30 H 1.08996 * 109.47395 * 299.90129 * 1 2 3 31 31 H 1.09001 * 109.46909 * 59.89390 * 1 2 3 32 32 H 1.08997 * 109.47641 * 179.89533 * 1 2 3 33 33 H 1.09001 * 109.51014 * 177.49865 * 5 4 2 34 34 H 1.08990 * 109.51659 * 57.34567 * 5 4 2 35 35 H 1.08991 * 109.68232 * 172.02851 * 6 5 4 36 36 H 1.08996 * 109.67894 * 292.58048 * 6 5 4 37 37 H 0.96996 * 119.99968 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.45653 * 35.00016 * 13 12 10 39 39 H 1.09007 * 109.49930 * 298.56514 * 14 13 12 40 40 H 1.09001 * 109.50240 * 58.66093 * 14 13 12 41 41 H 1.08995 * 109.59601 * 294.86209 * 15 14 13 42 42 H 1.09003 * 109.70583 * 174.50487 * 15 14 13 43 43 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 44 44 H 1.09006 * 109.58558 * 293.81696 * 25 16 15 45 45 H 1.08996 * 109.70527 * 173.46474 * 25 16 15 46 46 H 1.09005 * 109.49683 * 301.34215 * 26 13 12 47 47 H 1.09001 * 109.49613 * 61.43366 * 26 13 12 48 48 H 1.08999 * 109.47164 * 306.17445 * 29 27 7 49 49 H 1.08999 * 109.46832 * 66.17466 * 29 27 7 50 50 H 1.08996 * 109.46601 * 186.17552 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0074 -0.6759 1.1658 5 6 3.4312 -0.6850 1.2951 6 6 4.0406 -1.4459 0.1120 7 7 3.5012 -0.8768 -1.1331 8 6 4.3194 -0.5044 -2.1374 9 8 3.8686 0.0726 -3.1050 10 6 5.7818 -0.8020 -2.0590 11 8 6.2159 -1.4755 -1.1477 12 7 6.6185 -0.3225 -3.0006 13 6 8.0520 -0.6148 -2.9241 14 6 8.7322 0.4054 -2.0083 15 6 10.2245 0.0759 -1.9030 16 7 10.7906 0.0093 -3.2571 17 6 11.8890 0.7555 -3.5916 18 1 12.0801 1.6913 -3.0875 19 6 12.7571 0.3089 -4.5786 20 7 12.7113 -0.9446 -4.9772 21 14 13.9902 1.4871 -5.3407 22 1 13.8392 2.8293 -4.7235 23 1 15.3672 0.9844 -5.1029 24 1 13.7441 1.5841 -6.8019 25 6 10.1560 -0.8733 -4.2455 26 6 8.6644 -0.5334 -4.3243 27 6 2.0420 -0.7258 -1.2494 28 1 1.5757 -1.7084 -1.3201 29 6 1.7058 0.0949 -2.4962 30 1 -0.3634 0.5123 0.8908 31 1 -0.3633 0.5155 -0.8890 32 1 -0.3634 -1.0276 -0.0019 33 1 3.7090 -1.1778 2.2268 34 1 3.8029 0.3396 1.2995 35 1 5.1251 -1.3377 0.1254 36 1 3.7756 -2.5010 0.1785 37 1 6.2715 0.2160 -3.7289 38 1 8.1972 -1.6174 -2.5219 39 1 8.6087 1.4059 -2.4230 40 1 8.2797 0.3634 -1.0175 41 1 10.3524 -0.8856 -1.4058 42 1 10.7331 0.8529 -1.3321 43 1 13.3176 -1.2566 -5.6672 44 1 10.2783 -1.9123 -3.9394 45 1 10.6170 -0.7234 -5.2217 46 1 8.1635 -1.2437 -4.9822 47 1 8.5415 0.4759 -4.7170 48 1 2.2534 1.0370 -2.4696 49 1 1.9894 -0.4652 -3.3872 50 1 0.6351 0.2976 -2.5198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588126028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:22 Heat of formation + Delta-G solvation = -83.231607 kcal Electronic energy + Delta-G solvation = -30914.236123 eV Core-core repulsion = 26749.550239 eV Total energy + Delta-G solvation = -4164.685884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.35424 -40.73228 -39.47664 -38.95213 -36.56693 -35.74139 -34.87133 -33.93393 -31.87585 -31.28108 -30.17581 -29.88284 -27.38728 -26.28436 -24.89790 -23.98343 -23.92382 -23.25183 -22.00719 -21.36095 -20.62197 -19.04544 -18.52051 -17.98527 -17.62293 -17.24145 -17.06660 -16.80805 -16.61300 -16.35107 -15.75942 -15.58468 -15.41294 -15.32148 -15.17973 -14.79430 -14.46908 -14.24820 -14.13399 -14.06225 -13.93041 -13.42336 -13.23812 -13.04152 -12.97541 -12.85617 -12.64857 -12.59200 -12.51436 -12.27243 -12.11974 -12.01898 -11.89089 -11.88222 -11.61723 -11.52103 -11.37036 -11.25512 -10.57814 -10.23236 -10.03988 -9.66415 -8.70849 -7.88171 -5.34459 0.25141 1.12698 1.47268 1.49559 1.59624 2.02870 2.26510 2.51315 2.71354 3.17598 3.29142 3.51983 3.65566 3.81603 3.82847 3.91212 3.97127 3.97764 4.12718 4.22568 4.27456 4.37616 4.43056 4.44968 4.62787 4.65743 4.66684 4.77639 4.80994 4.88874 4.91035 4.95142 4.96406 4.98760 5.03332 5.05334 5.12223 5.28783 5.30622 5.37725 5.45206 5.47526 5.64318 5.70482 5.88003 6.10186 6.15141 6.39267 6.62886 6.87709 7.14367 7.83796 8.35577 9.18799 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029477 B = 0.002248 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.650934 B =12454.708255 C =12826.430928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 H 0.060 0.940 4 O -0.390 6.390 5 C 0.050 3.950 6 C 0.037 3.963 7 N -0.583 5.583 8 C 0.512 3.488 9 O -0.525 6.525 10 C 0.503 3.497 11 O -0.531 6.531 12 N -0.680 5.680 13 C 0.160 3.840 14 C -0.125 4.125 15 C 0.145 3.855 16 N -0.610 5.610 17 C -0.260 4.260 18 H 0.068 0.932 19 C -0.051 4.051 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.267 1.267 23 H -0.294 1.294 24 H -0.289 1.289 25 C 0.179 3.821 26 C -0.132 4.132 27 C 0.108 3.892 28 H 0.091 0.909 29 C -0.133 4.133 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.054 0.946 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.417 0.583 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.015 0.985 42 H 0.060 0.940 43 H 0.250 0.750 44 H -0.001 1.001 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.545 1.516 9.345 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.018 3.982 3 H 0.078 0.922 4 O -0.309 6.309 5 C -0.027 4.027 6 C -0.084 4.084 7 N -0.317 5.317 8 C 0.294 3.706 9 O -0.402 6.402 10 C 0.285 3.715 11 O -0.410 6.410 12 N -0.331 5.331 13 C 0.056 3.944 14 C -0.165 4.165 15 C 0.019 3.981 16 N -0.334 5.334 17 C -0.390 4.390 18 H 0.086 0.914 19 C -0.246 4.246 20 N -0.582 5.582 21 Si 0.796 3.204 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.216 1.216 25 C 0.053 3.947 26 C -0.172 4.172 27 C 0.006 3.994 28 H 0.109 0.891 29 C -0.190 4.190 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.147 0.853 34 H 0.073 0.927 35 H 0.156 0.844 36 H 0.100 0.900 37 H 0.254 0.746 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.017 0.983 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.496 1.202 9.495 27.233 hybrid contribution 1.239 0.412 -1.006 1.648 sum -24.257 1.614 8.488 25.750 Atomic orbital electron populations 1.21816 0.90167 1.03834 1.03988 1.22645 0.97170 0.94725 0.83621 0.92242 1.87955 1.21741 1.77588 1.43578 1.23127 0.80305 1.00326 0.98945 1.23560 1.04268 0.98518 0.82064 1.48157 1.07033 1.60393 1.16155 1.20043 0.87028 0.80031 0.83489 1.90814 1.75913 1.40379 1.33073 1.20406 0.87677 0.80582 0.82861 1.90497 1.78011 1.39375 1.33162 1.46008 1.07681 1.51855 1.27527 1.20902 0.77346 0.99142 0.96967 1.22204 0.96267 0.98840 0.99181 1.20972 0.92163 0.98313 0.86629 1.44360 1.31332 1.50627 1.07070 1.19543 1.00637 0.99931 1.18914 0.91434 1.25814 0.99585 0.96858 1.02335 1.70162 1.40451 1.14866 1.32674 0.85207 0.78304 0.78988 0.77927 1.19106 1.22098 1.21609 1.20564 0.88746 0.90997 0.94432 1.22300 0.97513 1.02406 0.94939 1.22351 0.78005 1.01255 0.97751 0.89149 1.22124 1.01524 1.00134 0.95215 0.90929 0.88933 0.91207 0.85315 0.92736 0.84413 0.90014 0.74606 0.90786 0.91739 0.91204 0.96745 0.92186 0.94038 0.98260 0.91762 0.90570 0.91376 0.92399 0.92135 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.38 71.98 0.67 -0.73 16 2 C 0.08 1.16 2.85 30.69 0.09 1.25 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 O -0.39 -6.90 10.38 -148.98 -1.55 -8.45 16 5 C 0.05 0.79 6.99 72.08 0.50 1.29 16 6 C 0.04 0.71 6.17 86.36 0.53 1.24 16 7 N -0.58 -12.29 3.02 -795.09 -2.40 -14.69 16 8 C 0.51 12.65 7.67 87.27 0.67 13.32 16 9 O -0.52 -13.87 12.04 -3.23 -0.04 -13.91 16 10 C 0.50 13.63 7.73 87.27 0.67 14.30 16 11 O -0.53 -15.90 12.83 -3.24 -0.04 -15.94 16 12 N -0.68 -18.26 5.07 -443.75 -2.25 -20.51 16 13 C 0.16 5.13 2.42 45.02 0.11 5.24 16 14 C -0.12 -4.14 5.65 30.67 0.17 -3.97 16 15 C 0.15 5.93 6.52 86.36 0.56 6.50 16 16 N -0.61 -29.94 2.99 -699.12 -2.09 -32.03 16 17 C -0.26 -14.01 9.59 84.03 0.81 -13.20 16 18 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 19 C -0.05 -2.78 4.96 84.86 0.42 -2.36 16 20 N -0.94 -54.42 11.11 21.65 0.24 -54.18 16 21 Si 0.97 44.18 29.58 68.60 2.03 46.21 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 25 C 0.18 8.34 5.29 86.36 0.46 8.80 16 26 C -0.13 -4.61 5.55 30.67 0.17 -4.44 16 27 C 0.11 1.86 3.12 44.97 0.14 2.00 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 C -0.13 -2.27 7.52 71.99 0.54 -1.72 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.63 6.61 -2.39 -0.02 0.62 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.14 3.08 4.40 -43.16 -0.19 2.89 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.42 10.07 8.09 -92.71 -0.75 9.32 16 38 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16 39 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 45 H 0.06 3.39 6.02 -2.39 -0.01 3.38 16 46 H 0.08 2.37 8.14 -2.38 -0.02 2.36 16 47 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.06 1.18 6.81 -2.39 -0.02 1.17 16 49 H 0.06 1.25 6.78 -2.39 -0.02 1.24 16 50 H 0.08 0.92 6.50 -2.39 -0.02 0.90 16 Total: -1.00 -64.28 382.49 0.44 -63.84 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.02 Total: 22.14 kcal Atomic # 6 Polarization: 20.99 SS G_CDS: 6.52 Total: 27.51 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -6.50 Total: -121.41 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.63 Total: -38.30 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.28 0.44 -63.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588126028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.393 kcal (2) G-P(sol) polarization free energy of solvation -64.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds