Wall clock time and date at job start Tue Mar 31 2020 23:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.51694 * 2 1 4 4 O 1.42964 * 109.51392 * 120.15723 * 2 1 3 5 5 C 1.42962 * 114.16894 * 182.50260 * 4 2 1 6 6 C 1.53713 * 109.14620 * 297.28878 * 5 4 2 7 7 N 1.47157 * 108.16168 * 52.53667 * 6 5 4 8 8 C 1.34778 * 120.97881 * 129.43638 * 7 6 5 9 9 O 1.21352 * 119.99833 * 186.59667 * 8 7 6 10 10 C 1.49444 * 120.00107 * 6.58514 * 8 7 6 11 11 O 1.21351 * 120.00222 * 6.01393 * 10 8 7 12 12 N 1.34781 * 119.99984 * 186.00959 * 10 8 7 13 13 C 1.47082 * 120.88250 * 173.06589 * 12 10 8 14 14 C 1.53239 * 108.68009 * 128.91125 * 13 12 10 15 15 N 1.46906 * 109.34018 * 53.73876 * 14 13 12 16 16 C 1.46892 * 110.99915 * 172.74427 * 15 14 13 17 17 C 1.50701 * 109.47007 * 189.99330 * 16 15 14 18 18 H 1.08001 * 120.00231 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00238 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99985 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99744 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47231 * 89.99630 * 21 19 17 23 23 H 1.48497 * 109.46938 * 209.99634 * 21 19 17 24 24 H 1.48507 * 109.47267 * 329.99582 * 21 19 17 25 25 C 1.46897 * 111.26235 * 296.88885 * 15 14 13 26 26 C 1.47149 * 120.92295 * 352.81881 * 12 10 8 27 27 C 1.47148 * 118.03649 * 309.15869 * 7 6 5 28 28 H 1.08997 * 109.68518 * 170.51032 * 27 7 6 29 29 C 1.53008 * 109.68078 * 291.02472 * 27 7 6 30 30 H 1.08997 * 109.47431 * 180.10041 * 1 2 3 31 31 H 1.08998 * 109.46948 * 300.09950 * 1 2 3 32 32 H 1.09002 * 109.47147 * 60.09421 * 1 2 3 33 33 H 1.08994 * 109.51169 * 57.34295 * 5 4 2 34 34 H 1.08998 * 109.51530 * 177.49775 * 5 4 2 35 35 H 1.09002 * 109.83940 * 292.86079 * 6 5 4 36 36 H 1.08995 * 109.74814 * 172.16298 * 6 5 4 37 37 H 1.08995 * 109.62742 * 9.10858 * 13 12 10 38 38 H 1.08999 * 109.62578 * 248.72036 * 13 12 10 39 39 H 1.09004 * 109.49008 * 173.68770 * 14 13 12 40 40 H 1.08996 * 109.50171 * 293.77430 * 14 13 12 41 41 H 1.08996 * 109.47438 * 309.99553 * 16 15 14 42 42 H 1.09006 * 109.47826 * 69.99715 * 16 15 14 43 43 H 0.97001 * 119.99338 * 179.97438 * 20 19 17 44 44 H 1.09009 * 109.49498 * 183.06646 * 25 15 14 45 45 H 1.09003 * 109.49848 * 303.14696 * 25 15 14 46 46 H 1.09001 * 109.46461 * 111.38124 * 26 12 10 47 47 H 1.08998 * 109.80536 * 350.98448 * 26 12 10 48 48 H 1.08995 * 109.46745 * 60.00273 * 29 27 7 49 49 H 1.09001 * 109.46890 * 180.02562 * 29 27 7 50 50 H 1.08996 * 109.47247 * 299.99749 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 8 2.0075 -0.6770 1.1651 5 6 3.4312 -0.6862 1.2944 6 6 4.0402 -1.4512 0.1084 7 7 3.5011 -0.8757 -1.1341 8 6 4.3192 -0.5033 -2.1383 9 8 3.8691 0.0780 -3.1038 10 6 5.7807 -0.8060 -2.0627 11 8 6.2143 -1.4811 -1.1523 12 7 6.6173 -0.3293 -3.0058 13 6 8.0737 -0.4853 -2.8716 14 6 8.6240 -1.0901 -4.1676 15 7 8.1896 -0.2730 -5.3086 16 6 8.8354 -0.7177 -6.5507 17 6 8.5632 0.2827 -7.6445 18 1 7.9694 1.1608 -7.4376 19 6 9.0722 0.0770 -8.9093 20 7 8.8343 0.9498 -9.8638 21 14 10.0987 -1.4422 -9.2673 22 1 9.2109 -2.5453 -9.7149 23 1 11.0827 -1.1341 -10.3359 24 1 10.8184 -1.8548 -8.0356 25 6 6.7268 -0.2814 -5.4436 26 6 6.0987 0.3565 -4.1999 27 6 2.0420 -0.7246 -1.2501 28 1 1.8030 -0.1388 -2.1377 29 6 1.3875 -2.1039 -1.3515 30 1 -0.3634 -1.0276 0.0018 31 1 -0.3633 0.5154 0.8891 32 1 -0.3633 0.5124 -0.8908 33 1 3.8030 0.3384 1.2997 34 1 3.7091 -1.1799 2.2256 35 1 3.7716 -2.5057 0.1712 36 1 5.1251 -1.3467 0.1207 37 1 8.2954 -1.1481 -2.0353 38 1 8.5318 0.4885 -2.6985 39 1 9.7131 -1.1079 -4.1269 40 1 8.2472 -2.1062 -4.2836 41 1 9.9107 -0.7991 -6.3922 42 1 8.4362 -1.6899 -6.8401 43 1 9.1927 0.8051 -10.7535 44 1 6.4399 0.2872 -6.3283 45 1 6.3764 -1.3089 -5.5417 46 1 6.3644 1.4127 -4.1563 47 1 5.0145 0.2532 -4.2434 48 1 1.6210 -2.6833 -0.4583 49 1 0.3071 -1.9880 -1.4378 50 1 1.7682 -2.6229 -2.2312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601458071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:05 Heat of formation + Delta-G solvation = -58.478066 kcal Electronic energy + Delta-G solvation = -31150.634435 eV Core-core repulsion = 26987.021945 eV Total energy + Delta-G solvation = -4163.612490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.43341 -39.90277 -38.45747 -37.86089 -35.54688 -34.49271 -33.92926 -32.40398 -30.91203 -29.54250 -29.17100 -28.83501 -26.52714 -25.37956 -23.85128 -23.84276 -23.11058 -21.58079 -20.79187 -19.75087 -19.12469 -17.49270 -17.28842 -16.88789 -16.66146 -16.50692 -16.36277 -15.94739 -15.18668 -14.83288 -14.74912 -14.65014 -14.51716 -14.21317 -14.01730 -13.63173 -13.55437 -13.47768 -13.17639 -12.90689 -12.69090 -12.43348 -12.37853 -12.34009 -12.05609 -12.00316 -11.58501 -11.54670 -11.42651 -11.21985 -10.97947 -10.81706 -10.66421 -10.56600 -10.45055 -10.18294 -9.86610 -9.34958 -9.03836 -8.91407 -8.69272 -8.61570 -7.50032 -6.09356 -4.07266 1.23087 2.02815 3.01103 3.12965 3.25235 3.33230 3.34509 3.36100 3.95701 4.22905 4.38141 4.47701 4.59179 4.64307 4.68476 4.83054 4.91547 4.98614 5.12879 5.19301 5.20597 5.22669 5.30113 5.34104 5.39993 5.46648 5.49505 5.51142 5.54560 5.64355 5.72831 5.75220 5.86507 5.87654 5.89942 6.06719 6.14643 6.37781 6.43656 6.54473 6.75544 6.76946 6.79474 6.90498 7.22596 7.50873 7.55286 7.78726 7.84022 7.93775 8.59289 8.98380 9.51964 11.03537 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.002473 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.283893 B =11317.455558 C =11946.905009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 H 0.064 0.936 4 O -0.377 6.377 5 C 0.048 3.952 6 C 0.036 3.964 7 N -0.583 5.583 8 C 0.514 3.486 9 O -0.505 6.505 10 C 0.507 3.493 11 O -0.529 6.529 12 N -0.567 5.567 13 C 0.113 3.887 14 C 0.039 3.961 15 N -0.528 5.528 16 C 0.163 3.837 17 C -0.512 4.512 18 H 0.082 0.918 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.052 3.948 26 C 0.061 3.939 27 C 0.103 3.897 28 H 0.111 0.889 29 C -0.158 4.158 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.028 0.972 41 H 0.030 0.970 42 H -0.016 1.016 43 H 0.264 0.736 44 H 0.105 0.895 45 H 0.023 0.977 46 H 0.076 0.924 47 H 0.146 0.854 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.018 -4.195 22.881 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.023 3.977 3 H 0.082 0.918 4 O -0.296 6.296 5 C -0.029 4.029 6 C -0.085 4.085 7 N -0.317 5.317 8 C 0.298 3.702 9 O -0.381 6.381 10 C 0.290 3.710 11 O -0.409 6.409 12 N -0.298 5.298 13 C -0.009 4.009 14 C -0.091 4.091 15 N -0.253 5.253 16 C 0.037 3.963 17 C -0.550 4.550 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.703 3.297 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.192 1.192 25 C -0.077 4.077 26 C -0.060 4.060 27 C 0.001 3.999 28 H 0.129 0.871 29 C -0.216 4.216 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.167 0.833 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.048 0.952 42 H 0.002 0.998 43 H 0.074 0.926 44 H 0.123 0.877 45 H 0.042 0.958 46 H 0.094 0.906 47 H 0.163 0.837 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.944 -3.784 22.832 27.019 hybrid contribution 0.701 -1.553 -0.790 1.878 sum -13.242 -5.336 22.041 26.261 Atomic orbital electron populations 1.21841 0.92026 1.03534 1.02973 1.22450 0.95742 0.95034 0.84523 0.91829 1.87947 1.21175 1.77313 1.43127 1.23128 0.80905 1.00217 0.98667 1.23640 1.04811 0.97988 0.82101 1.48111 1.06301 1.60871 1.16368 1.20269 0.87727 0.79336 0.82859 1.90432 1.76355 1.40252 1.31097 1.19896 0.86979 0.81067 0.83091 1.90441 1.77304 1.38977 1.34153 1.48241 1.07027 1.53647 1.20911 1.21945 0.77952 1.02374 0.98648 1.22434 1.00555 0.94763 0.91298 1.61968 1.06284 1.52363 1.04646 1.20186 0.94354 0.94670 0.87139 1.21011 1.33611 1.08029 0.92328 0.90006 1.24897 0.95968 0.96269 0.96127 1.69890 1.45699 1.35609 1.02504 0.86863 0.80752 0.83753 0.78350 1.20372 1.21099 1.19234 1.22398 0.88226 0.99118 0.97964 1.23400 1.03884 0.96637 0.82097 1.22046 0.78835 0.98728 1.00330 0.87144 1.22093 1.00943 0.95840 1.02741 0.91037 0.91396 0.90598 0.92715 0.87456 0.90469 0.83314 0.88995 0.90017 0.89748 0.95370 0.95190 0.99837 0.92602 0.87689 0.95833 0.90603 0.83714 0.91535 0.90633 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.01 37.16 0.33 -0.55 16 2 C 0.08 0.67 3.10 -26.58 -0.08 0.58 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 4 O -0.38 -3.44 10.01 -35.23 -0.35 -3.80 16 5 C 0.05 0.39 7.00 37.53 0.26 0.65 16 6 C 0.04 0.34 5.81 -3.31 -0.02 0.32 16 7 N -0.58 -6.43 2.71 -164.99 -0.45 -6.87 16 8 C 0.51 6.90 7.69 -11.59 -0.09 6.81 16 9 O -0.50 -7.53 12.52 5.50 0.07 -7.46 16 10 C 0.51 7.24 7.63 -11.59 -0.09 7.15 16 11 O -0.53 -7.65 12.62 5.50 0.07 -7.58 16 12 N -0.57 -8.53 3.02 -172.91 -0.52 -9.06 16 13 C 0.11 1.61 6.61 -3.60 -0.02 1.59 16 14 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 15 N -0.53 -10.75 4.62 -235.76 -1.09 -11.84 16 16 C 0.16 3.87 3.79 -4.98 -0.02 3.85 16 17 C -0.51 -14.23 8.96 -34.44 -0.31 -14.54 16 18 H 0.08 2.46 7.37 -52.49 -0.39 2.08 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 21 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 25 C 0.05 0.98 5.46 -3.70 -0.02 0.96 16 26 C 0.06 0.97 6.28 -3.56 -0.02 0.95 16 27 C 0.10 0.97 2.87 -67.42 -0.19 0.77 16 28 H 0.11 1.11 7.06 -51.93 -0.37 0.74 16 29 C -0.16 -1.29 8.63 37.16 0.32 -0.97 16 30 H 0.07 0.41 6.38 -51.93 -0.33 0.08 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.71 7.65 -51.93 -0.40 0.32 16 36 H 0.15 1.60 4.39 -54.55 -0.24 1.37 16 37 H 0.09 1.21 7.04 -51.93 -0.37 0.84 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.03 0.72 7.03 -51.93 -0.36 0.35 16 42 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.11 2.21 6.67 -51.92 -0.35 1.86 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.15 2.32 4.08 -55.98 -0.23 2.09 16 48 H 0.07 0.56 7.21 -51.93 -0.37 0.19 16 49 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 50 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -31.46 378.19 -8.47 -39.94 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.94 Total: 0.66 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -0.07 Total: 10.08 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -1.29 Total: -54.16 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.21 Total: -18.84 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.46 -8.47 -39.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601458071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.543 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds