Wall clock time and date at job start Tue Mar 31 2020 23:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.51694 * 2 1 4 4 O 1.42964 * 109.51392 * 120.15723 * 2 1 3 5 5 C 1.42962 * 114.16894 * 182.50260 * 4 2 1 6 6 C 1.53713 * 109.14620 * 297.28878 * 5 4 2 7 7 N 1.47157 * 108.16168 * 52.53667 * 6 5 4 8 8 C 1.34778 * 120.97881 * 129.43638 * 7 6 5 9 9 O 1.21352 * 119.99833 * 186.59667 * 8 7 6 10 10 C 1.49444 * 120.00107 * 6.58514 * 8 7 6 11 11 O 1.21351 * 120.00222 * 6.01393 * 10 8 7 12 12 N 1.34781 * 119.99984 * 186.00959 * 10 8 7 13 13 C 1.47082 * 120.88250 * 173.06589 * 12 10 8 14 14 C 1.53239 * 108.68009 * 128.91125 * 13 12 10 15 15 N 1.46906 * 109.34018 * 53.73876 * 14 13 12 16 16 C 1.46892 * 110.99915 * 172.74427 * 15 14 13 17 17 C 1.50701 * 109.47007 * 189.99330 * 16 15 14 18 18 H 1.08001 * 120.00231 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00238 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99985 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99744 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47231 * 89.99630 * 21 19 17 23 23 H 1.48497 * 109.46938 * 209.99634 * 21 19 17 24 24 H 1.48507 * 109.47267 * 329.99582 * 21 19 17 25 25 C 1.46897 * 111.26235 * 296.88885 * 15 14 13 26 26 C 1.47149 * 120.92295 * 352.81881 * 12 10 8 27 27 C 1.47148 * 118.03649 * 309.15869 * 7 6 5 28 28 H 1.08997 * 109.68518 * 170.51032 * 27 7 6 29 29 C 1.53008 * 109.68078 * 291.02472 * 27 7 6 30 30 H 1.08997 * 109.47431 * 180.10041 * 1 2 3 31 31 H 1.08998 * 109.46948 * 300.09950 * 1 2 3 32 32 H 1.09002 * 109.47147 * 60.09421 * 1 2 3 33 33 H 1.08994 * 109.51169 * 57.34295 * 5 4 2 34 34 H 1.08998 * 109.51530 * 177.49775 * 5 4 2 35 35 H 1.09002 * 109.83940 * 292.86079 * 6 5 4 36 36 H 1.08995 * 109.74814 * 172.16298 * 6 5 4 37 37 H 1.08995 * 109.62742 * 9.10858 * 13 12 10 38 38 H 1.08999 * 109.62578 * 248.72036 * 13 12 10 39 39 H 1.09004 * 109.49008 * 173.68770 * 14 13 12 40 40 H 1.08996 * 109.50171 * 293.77430 * 14 13 12 41 41 H 1.08996 * 109.47438 * 309.99553 * 16 15 14 42 42 H 1.09006 * 109.47826 * 69.99715 * 16 15 14 43 43 H 0.97001 * 119.99338 * 179.97438 * 20 19 17 44 44 H 1.09009 * 109.49498 * 183.06646 * 25 15 14 45 45 H 1.09003 * 109.49848 * 303.14696 * 25 15 14 46 46 H 1.09001 * 109.46461 * 111.38124 * 26 12 10 47 47 H 1.08998 * 109.80536 * 350.98448 * 26 12 10 48 48 H 1.08995 * 109.46745 * 60.00273 * 29 27 7 49 49 H 1.09001 * 109.46890 * 180.02562 * 29 27 7 50 50 H 1.08996 * 109.47247 * 299.99749 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 8 2.0075 -0.6770 1.1651 5 6 3.4312 -0.6862 1.2944 6 6 4.0402 -1.4512 0.1084 7 7 3.5011 -0.8757 -1.1341 8 6 4.3192 -0.5033 -2.1383 9 8 3.8691 0.0780 -3.1038 10 6 5.7807 -0.8060 -2.0627 11 8 6.2143 -1.4811 -1.1523 12 7 6.6173 -0.3293 -3.0058 13 6 8.0737 -0.4853 -2.8716 14 6 8.6240 -1.0901 -4.1676 15 7 8.1896 -0.2730 -5.3086 16 6 8.8354 -0.7177 -6.5507 17 6 8.5632 0.2827 -7.6445 18 1 7.9694 1.1608 -7.4376 19 6 9.0722 0.0770 -8.9093 20 7 8.8343 0.9498 -9.8638 21 14 10.0987 -1.4422 -9.2673 22 1 9.2109 -2.5453 -9.7149 23 1 11.0827 -1.1341 -10.3359 24 1 10.8184 -1.8548 -8.0356 25 6 6.7268 -0.2814 -5.4436 26 6 6.0987 0.3565 -4.1999 27 6 2.0420 -0.7246 -1.2501 28 1 1.8030 -0.1388 -2.1377 29 6 1.3875 -2.1039 -1.3515 30 1 -0.3634 -1.0276 0.0018 31 1 -0.3633 0.5154 0.8891 32 1 -0.3633 0.5124 -0.8908 33 1 3.8030 0.3384 1.2997 34 1 3.7091 -1.1799 2.2256 35 1 3.7716 -2.5057 0.1712 36 1 5.1251 -1.3467 0.1207 37 1 8.2954 -1.1481 -2.0353 38 1 8.5318 0.4885 -2.6985 39 1 9.7131 -1.1079 -4.1269 40 1 8.2472 -2.1062 -4.2836 41 1 9.9107 -0.7991 -6.3922 42 1 8.4362 -1.6899 -6.8401 43 1 9.1927 0.8051 -10.7535 44 1 6.4399 0.2872 -6.3283 45 1 6.3764 -1.3089 -5.5417 46 1 6.3644 1.4127 -4.1563 47 1 5.0145 0.2532 -4.2434 48 1 1.6210 -2.6833 -0.4583 49 1 0.3071 -1.9880 -1.4378 50 1 1.7682 -2.6229 -2.2312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601458071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:05 Heat of formation + Delta-G solvation = -81.453126 kcal Electronic energy + Delta-G solvation = -31151.630708 eV Core-core repulsion = 26987.021945 eV Total energy + Delta-G solvation = -4164.608764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.45123 -40.86102 -39.50233 -39.18496 -36.61845 -35.70904 -34.72720 -34.39957 -32.25757 -30.71047 -30.19686 -29.79054 -27.95223 -26.42417 -25.01843 -24.74587 -24.23316 -23.16582 -22.09370 -20.74958 -20.18051 -18.98008 -18.45444 -18.35010 -17.72508 -17.37676 -17.24104 -16.84379 -16.57166 -16.08220 -16.00674 -15.84765 -15.79880 -15.47444 -15.36193 -15.04924 -14.46511 -14.45949 -14.33829 -14.18389 -13.84581 -13.73093 -13.27373 -13.15089 -13.04264 -13.02163 -12.75574 -12.70893 -12.68660 -12.50030 -12.27915 -12.09079 -12.03549 -11.81680 -11.76083 -11.49079 -11.31460 -11.16417 -10.80082 -10.14619 -9.95933 -9.75869 -9.12720 -8.28969 -6.32509 0.13885 1.03093 1.34052 1.35350 1.45984 1.91858 2.09730 2.33331 2.72407 2.88201 3.02626 3.14220 3.52616 3.77991 3.87297 3.92969 3.96499 3.99070 4.14389 4.15903 4.23986 4.28922 4.31506 4.34391 4.45259 4.59320 4.63330 4.69820 4.73015 4.76695 4.78260 4.83158 4.85391 4.90486 4.92492 4.97503 5.00323 5.04301 5.16397 5.20234 5.31776 5.38433 5.51041 5.77081 5.91517 6.07609 6.13026 6.25395 6.46666 6.58086 6.73709 6.73765 7.30933 8.87359 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023518 B = 0.002473 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.283893 B =11317.455558 C =11946.905009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.059 0.941 4 O -0.384 6.384 5 C 0.050 3.950 6 C 0.036 3.964 7 N -0.576 5.576 8 C 0.510 3.490 9 O -0.527 6.527 10 C 0.509 3.491 11 O -0.528 6.528 12 N -0.574 5.574 13 C 0.119 3.881 14 C 0.039 3.961 15 N -0.541 5.541 16 C 0.172 3.828 17 C -0.516 4.516 18 H 0.041 0.959 19 C 0.009 3.991 20 N -0.946 5.946 21 Si 0.946 3.054 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.247 1.247 25 C 0.057 3.943 26 C 0.077 3.923 27 C 0.098 3.902 28 H 0.102 0.898 29 C -0.152 4.152 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.027 0.973 41 H 0.036 0.964 42 H -0.017 1.017 43 H 0.267 0.733 44 H 0.074 0.926 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.150 0.850 48 H 0.065 0.935 49 H 0.096 0.904 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 -5.876 25.239 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.024 3.976 3 H 0.077 0.923 4 O -0.303 6.303 5 C -0.027 4.027 6 C -0.085 4.085 7 N -0.309 5.309 8 C 0.293 3.707 9 O -0.406 6.406 10 C 0.293 3.707 11 O -0.407 6.407 12 N -0.306 5.306 13 C -0.003 4.003 14 C -0.090 4.090 15 N -0.265 5.265 16 C 0.045 3.955 17 C -0.555 4.555 18 H 0.060 0.940 19 C -0.188 4.188 20 N -0.587 5.587 21 Si 0.769 3.231 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.171 1.171 25 C -0.072 4.072 26 C -0.044 4.044 27 C -0.004 4.004 28 H 0.120 0.880 29 C -0.210 4.210 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.101 0.899 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.001 0.999 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.038 0.962 46 H 0.091 0.909 47 H 0.166 0.834 48 H 0.084 0.916 49 H 0.115 0.885 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.076 -5.485 25.261 29.434 hybrid contribution 0.650 -0.986 -1.427 1.853 sum -13.426 -6.471 23.834 28.110 Atomic orbital electron populations 1.21859 0.90231 1.04140 1.03815 1.22517 0.97109 0.94403 0.83618 0.92337 1.87951 1.21633 1.77374 1.43312 1.23210 0.80394 1.00266 0.98804 1.23676 1.04277 0.98532 0.81969 1.48264 1.06977 1.59559 1.16097 1.20165 0.87565 0.79673 0.83258 1.90407 1.76455 1.41618 1.32074 1.20044 0.87311 0.80637 0.82749 1.90459 1.77570 1.38730 1.33973 1.48239 1.07519 1.54065 1.20769 1.21954 0.77471 1.03109 0.97762 1.22543 1.01621 0.94194 0.90603 1.61876 1.06690 1.53542 1.04418 1.19951 0.94873 0.93149 0.87529 1.21240 1.32644 1.07626 0.93969 0.94027 1.25822 0.97429 0.99749 0.95841 1.70045 1.47413 1.38069 1.03143 0.85741 0.79065 0.79357 0.78911 1.19689 1.20651 1.17079 1.22287 0.87905 0.98572 0.98443 1.23147 1.03764 0.96147 0.81331 1.22244 0.77752 0.99602 1.00783 0.87978 1.22062 1.02105 0.94742 1.02072 0.90511 0.90903 0.89468 0.92707 0.85137 0.89896 0.84288 0.87184 0.89175 0.88230 0.95512 0.94561 0.99948 0.92416 0.90760 0.96214 0.90889 0.83353 0.91554 0.88539 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.01 71.98 0.65 -0.77 16 2 C 0.08 1.21 3.10 30.69 0.10 1.30 16 3 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 4 O -0.38 -6.17 10.01 -148.98 -1.49 -7.66 16 5 C 0.05 0.70 7.00 72.22 0.51 1.20 16 6 C 0.04 0.63 5.81 86.49 0.50 1.13 16 7 N -0.58 -12.08 2.71 -794.28 -2.15 -14.23 16 8 C 0.51 13.35 7.69 87.27 0.67 14.02 16 9 O -0.53 -15.72 12.52 -3.25 -0.04 -15.76 16 10 C 0.51 13.95 7.63 87.27 0.67 14.61 16 11 O -0.53 -14.31 12.62 -3.25 -0.04 -14.35 16 12 N -0.57 -16.71 3.02 -819.34 -2.47 -19.19 16 13 C 0.12 3.17 6.61 86.35 0.57 3.74 16 14 C 0.04 1.23 5.62 86.38 0.49 1.72 16 15 N -0.54 -21.96 4.62 -899.80 -4.16 -26.11 16 16 C 0.17 8.14 3.79 85.56 0.32 8.46 16 17 C -0.52 -29.56 8.96 25.60 0.23 -29.33 16 18 H 0.04 2.65 7.37 -2.91 -0.02 2.63 16 19 C 0.01 0.53 5.47 84.66 0.46 0.99 16 20 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 21 Si 0.95 43.75 27.47 68.60 1.88 45.64 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.25 -10.54 6.54 99.48 0.65 -9.89 16 25 C 0.06 2.22 5.46 86.38 0.47 2.69 16 26 C 0.08 2.51 6.28 86.34 0.54 3.05 16 27 C 0.10 1.72 2.87 44.97 0.13 1.85 16 28 H 0.10 1.99 7.06 -2.39 -0.02 1.97 16 29 C -0.15 -2.24 8.63 71.98 0.62 -1.62 16 30 H 0.08 0.69 6.38 -2.39 -0.02 0.67 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.37 7.65 -2.39 -0.02 1.35 16 36 H 0.14 2.76 4.39 -43.79 -0.19 2.57 16 37 H 0.11 2.58 7.04 -2.39 -0.02 2.57 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.10 2.84 7.99 -2.38 -0.02 2.82 16 40 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.04 1.68 7.03 -2.39 -0.02 1.66 16 42 H -0.02 -0.81 7.55 -2.38 -0.02 -0.83 16 43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.07 3.33 6.67 -2.38 -0.02 3.31 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.15 4.83 4.08 -66.56 -0.27 4.56 16 48 H 0.07 0.99 7.21 -2.39 -0.02 0.97 16 49 H 0.10 1.01 6.43 -2.39 -0.02 0.99 16 50 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -68.71 378.19 -0.80 -69.51 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.45 Total: 17.70 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 6.93 Total: 23.06 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -8.48 Total: -118.12 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.57 Total: -37.78 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.88 Total: 45.64 kcal Total: -68.71 -0.80 -69.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601458071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.942 kcal (2) G-P(sol) polarization free energy of solvation -68.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds