Wall clock time and date at job start Tue Mar 31 2020 23:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 110.77907 * 2 1 4 4 C 1.55154 * 110.71674 * 236.76243 * 2 1 3 5 5 C 1.54908 * 101.58366 * 277.13776 * 4 2 1 6 6 N 1.47427 * 104.83389 * 322.99535 * 5 4 2 7 7 C 1.34774 * 125.64888 * 204.09189 * 6 5 4 8 8 O 1.21347 * 120.00024 * 180.02562 * 7 6 5 9 9 C 1.49442 * 119.99972 * 0.04064 * 7 6 5 10 10 O 1.21349 * 120.00195 * 353.44274 * 9 7 6 11 11 N 1.34780 * 119.99909 * 173.44215 * 9 7 6 12 12 C 1.47081 * 120.87872 * 181.23705 * 11 9 7 13 13 C 1.53702 * 108.27551 * 128.75710 * 12 11 9 14 14 N 1.46908 * 109.25463 * 54.07989 * 13 12 11 15 15 C 1.46898 * 110.99910 * 172.60924 * 14 13 12 16 16 C 1.50705 * 109.47101 * 294.30594 * 15 14 13 17 17 H 1.08000 * 119.99965 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99948 * 180.02562 * 16 15 14 19 19 N 1.31509 * 120.00227 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47420 * 59.99461 * 20 18 16 22 22 H 1.48506 * 109.47058 * 179.97438 * 20 18 16 23 23 H 1.48509 * 109.46997 * 299.99098 * 20 18 16 24 24 C 1.46891 * 111.26858 * 296.75843 * 14 13 12 25 25 C 1.47075 * 120.88133 * 1.52091 * 11 9 7 26 26 C 1.47027 * 108.70009 * 24.12301 * 6 5 4 27 27 H 1.08995 * 109.88105 * 239.52340 * 26 6 5 28 28 C 1.53004 * 109.87651 * 118.36100 * 26 6 5 29 29 O 1.42896 * 109.47373 * 67.19448 * 28 26 6 30 30 H 1.08997 * 109.46628 * 296.76111 * 1 2 3 31 31 H 1.08997 * 109.46770 * 56.75893 * 1 2 3 32 32 H 1.08994 * 109.46851 * 176.76076 * 1 2 3 33 33 H 1.08994 * 111.00816 * 35.21693 * 4 2 1 34 34 H 1.09000 * 110.99957 * 159.06742 * 4 2 1 35 35 H 1.08996 * 110.36674 * 204.15474 * 5 4 2 36 36 H 1.09001 * 110.36700 * 81.83291 * 5 4 2 37 37 H 1.09003 * 109.63090 * 248.52192 * 12 11 9 38 38 H 1.09001 * 109.63123 * 9.10662 * 12 11 9 39 39 H 1.08995 * 109.64886 * 294.08273 * 13 12 11 40 40 H 1.08997 * 109.42608 * 173.94456 * 13 12 11 41 41 H 1.08998 * 109.47157 * 54.30271 * 15 14 13 42 42 H 1.08994 * 109.47243 * 174.30494 * 15 14 13 43 43 H 0.97000 * 120.00238 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.49777 * 303.14421 * 24 14 13 45 45 H 1.09002 * 109.51392 * 183.07683 * 24 14 13 46 46 H 1.09002 * 109.62739 * 350.89149 * 25 11 9 47 47 H 1.08996 * 109.63361 * 111.47580 * 25 11 9 48 48 H 1.09004 * 109.47068 * 187.19123 * 28 26 6 49 49 H 1.09001 * 109.47110 * 307.18851 * 28 26 6 50 50 H 0.96701 * 114.00129 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0789 -0.7954 -1.2138 5 6 2.0126 -2.2509 -0.6876 6 7 2.3716 -2.1532 0.7389 7 6 2.8849 -3.1479 1.4896 8 8 3.1434 -2.9539 2.6593 9 6 3.1362 -4.4896 0.8815 10 8 2.7694 -4.7204 -0.2520 11 7 3.7701 -5.4435 1.5919 12 6 4.0514 -6.7617 1.0032 13 6 5.5420 -7.0740 1.2106 14 7 5.8693 -6.9489 2.6373 15 6 7.2388 -7.4076 2.9055 16 6 7.3346 -8.8874 2.6364 17 1 6.4650 -9.4325 2.3003 18 6 8.5321 -9.5454 2.8205 19 7 9.5909 -8.8817 3.2302 20 14 8.6507 -11.3797 2.4877 21 1 8.3080 -11.6484 1.0680 22 1 10.0352 -11.8435 2.7587 23 1 7.7032 -12.1053 3.3716 24 6 5.6732 -5.5720 3.1101 25 6 4.1935 -5.1960 2.9785 26 6 2.0760 -0.7912 1.2072 27 1 2.9869 -0.3208 1.5775 28 6 1.0236 -0.8395 2.3168 29 8 1.5781 -1.4716 3.4721 30 1 -0.3632 0.4627 0.9176 31 1 -0.3633 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0581 33 1 1.4397 -0.6662 -2.0871 34 1 3.1061 -0.5073 -1.4375 35 1 2.7293 -2.8787 -1.2170 36 1 1.0039 -2.6488 -0.7986 37 1 3.4433 -7.5202 1.4961 38 1 3.8249 -6.7425 -0.0628 39 1 6.1469 -6.3727 0.6359 40 1 5.7490 -8.0911 0.8779 41 1 7.9340 -6.8747 2.2569 42 1 7.4904 -7.2108 3.9475 43 1 10.4335 -9.3445 3.3593 44 1 6.2762 -4.8916 2.5089 45 1 5.9754 -5.4993 4.1549 46 1 4.0609 -4.1412 3.2191 47 1 3.5987 -5.8069 3.6576 48 1 0.7161 0.1751 2.5702 49 1 0.1584 -1.4061 1.9725 50 1 0.9652 -1.5367 4.2172 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601461328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:23 Heat of formation + Delta-G solvation = -99.277608 kcal Electronic energy + Delta-G solvation = -31202.087471 eV Core-core repulsion = 27036.705780 eV Total energy + Delta-G solvation = -4165.381691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18343 -40.69835 -39.07330 -38.91557 -37.14183 -36.06568 -34.45231 -33.80387 -32.20495 -31.39199 -30.24205 -28.58875 -27.42995 -25.93350 -25.73413 -24.57481 -23.77682 -22.97790 -21.65650 -20.39249 -20.03697 -18.61244 -18.42489 -18.11299 -17.99469 -17.74540 -16.92048 -16.62165 -16.46261 -16.08364 -15.74328 -15.52726 -15.40555 -15.33087 -15.12993 -15.00767 -14.57208 -14.25800 -14.09719 -13.92082 -13.63036 -13.53609 -13.22213 -13.12965 -13.02800 -12.80569 -12.75683 -12.65565 -12.54781 -12.36709 -12.25658 -12.01652 -11.85344 -11.76507 -11.52003 -11.44874 -11.33344 -10.79196 -10.63061 -10.04154 -9.98337 -9.70632 -9.11043 -8.21408 -6.32213 0.36330 1.17064 1.41663 1.45120 1.52878 2.11936 2.28245 2.40490 3.05120 3.10401 3.22056 3.24033 3.52511 3.71438 3.91494 4.00028 4.03204 4.17762 4.17969 4.26430 4.28314 4.37515 4.37828 4.43458 4.50985 4.52881 4.66759 4.72943 4.79188 4.85576 4.87721 4.90233 4.96718 4.98934 5.09466 5.10747 5.15345 5.18116 5.21508 5.24516 5.40361 5.46172 5.61827 5.97904 6.01552 6.21480 6.26191 6.53164 6.62427 6.82706 6.94077 7.01140 7.37545 8.89777 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026308 B = 0.002419 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.045722 B =11574.429999 C =12072.072786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.115 0.885 4 C -0.124 4.124 5 C 0.094 3.906 6 N -0.585 5.585 7 C 0.514 3.486 8 O -0.486 6.486 9 C 0.502 3.498 10 O -0.543 6.543 11 N -0.578 5.578 12 C 0.123 3.877 13 C 0.057 3.943 14 N -0.540 5.540 15 C 0.209 3.791 16 C -0.525 4.525 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.043 3.957 25 C 0.076 3.924 26 C 0.131 3.869 27 H 0.071 0.929 28 C 0.064 3.936 29 O -0.571 6.571 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.011 0.989 40 H 0.087 0.913 41 H -0.042 1.042 42 H 0.007 0.993 43 H 0.265 0.735 44 H 0.013 0.987 45 H 0.083 0.917 46 H 0.157 0.843 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.050 0.950 50 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.292 21.363 -7.493 31.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.133 0.867 4 C -0.161 4.161 5 C -0.027 4.027 6 N -0.320 5.320 7 C 0.297 3.703 8 O -0.362 6.362 9 C 0.285 3.715 10 O -0.422 6.422 11 N -0.311 5.311 12 C 0.001 3.999 13 C -0.072 4.072 14 N -0.265 5.265 15 C 0.083 3.917 16 C -0.563 4.563 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.796 3.204 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.192 1.192 24 C -0.086 4.086 25 C -0.045 4.045 26 C 0.028 3.972 27 H 0.089 0.911 28 C -0.014 4.014 29 O -0.377 6.377 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.030 0.970 40 H 0.106 0.894 41 H -0.024 1.024 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.102 0.898 46 H 0.173 0.827 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.068 0.932 50 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -21.930 20.924 -7.492 31.223 hybrid contribution 1.005 -0.722 0.080 1.240 sum -20.925 20.202 -7.412 30.015 Atomic orbital electron populations 1.21922 0.92755 1.02235 1.03593 1.22239 0.97451 0.99578 0.91252 0.86655 1.22948 1.03003 0.91784 0.98413 1.22706 1.01541 0.99285 0.79212 1.48397 1.60243 1.10906 1.12409 1.19675 0.79627 0.84860 0.86162 1.90409 1.49311 1.80854 1.15600 1.20316 0.79435 0.85978 0.85730 1.90663 1.51957 1.81252 1.18290 1.48201 1.54500 1.13226 1.15150 1.21967 0.94982 0.82935 1.00059 1.22371 0.94644 1.01525 0.88692 1.62063 1.27289 1.20540 1.16615 1.19379 0.83072 0.95082 0.94209 1.21422 0.96069 0.93865 1.44921 0.91444 1.25952 0.95172 1.03744 0.94873 1.70086 1.01567 1.38307 1.47608 0.85395 0.77115 0.78742 0.79114 1.19104 1.20986 1.19180 1.22482 0.96624 0.88783 1.00667 1.23273 0.93034 1.07855 0.80360 1.22044 0.98519 0.81229 0.95389 0.91083 1.22744 0.94812 0.97730 0.86142 1.86868 1.43466 1.82354 1.24999 0.91121 0.90229 0.93169 0.86947 0.90326 0.90523 0.90601 0.89415 0.88201 0.97027 0.89449 1.02406 0.97465 0.92657 0.96857 0.89842 0.82669 0.90446 0.90238 0.93198 0.76945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 7.97 71.99 0.57 -0.30 16 2 C -0.09 -0.75 3.55 -9.60 -0.03 -0.78 16 3 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.12 -1.25 6.58 31.98 0.21 -1.04 16 5 C 0.09 1.70 5.65 86.85 0.49 2.19 16 6 N -0.59 -13.13 3.07 -789.63 -2.42 -15.55 16 7 C 0.51 15.00 7.58 87.27 0.66 15.66 16 8 O -0.49 -15.51 10.34 19.76 0.20 -15.31 16 9 C 0.50 16.09 7.72 87.27 0.67 16.77 16 10 O -0.54 -17.98 13.34 -3.24 -0.04 -18.03 16 11 N -0.58 -19.36 3.00 -818.61 -2.46 -21.81 16 12 C 0.12 4.12 6.62 86.50 0.57 4.70 16 13 C 0.06 2.31 5.47 86.54 0.47 2.78 16 14 N -0.54 -24.46 4.62 -898.87 -4.15 -28.61 16 15 C 0.21 11.49 4.72 85.56 0.40 11.89 16 16 C -0.52 -30.02 8.41 25.60 0.22 -29.80 16 17 H 0.07 3.73 7.13 -2.91 -0.02 3.70 16 18 C 0.00 0.04 5.46 84.65 0.46 0.50 16 19 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 20 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.04 1.71 5.62 86.39 0.49 2.19 16 25 C 0.08 2.54 6.35 86.35 0.55 3.08 16 26 C 0.13 2.16 3.22 45.34 0.15 2.31 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 C 0.06 0.94 5.29 71.98 0.38 1.33 16 29 O -0.57 -11.94 10.38 -125.98 -1.31 -13.25 16 30 H 0.07 0.32 6.55 -2.39 -0.02 0.30 16 31 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.05 0.43 6.99 -2.39 -0.02 0.41 16 33 H 0.11 0.65 8.04 -2.39 -0.02 0.63 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.74 6.35 -2.39 -0.02 1.72 16 36 H 0.08 1.31 7.69 -2.39 -0.02 1.29 16 37 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.10 3.16 7.07 -2.39 -0.02 3.14 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 40 H 0.09 3.73 6.67 -2.39 -0.02 3.71 16 41 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 42 H 0.01 0.43 7.97 -2.39 -0.02 0.41 16 43 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 45 H 0.08 3.21 7.99 -2.39 -0.02 3.19 16 46 H 0.16 5.18 3.92 -75.26 -0.29 4.88 16 47 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.08 0.73 7.40 -2.38 -0.02 0.71 16 49 H 0.05 0.71 6.99 -2.39 -0.02 0.69 16 50 H 0.38 4.95 9.12 -74.06 -0.68 4.27 16 Total: -1.00 -73.65 380.54 -1.61 -75.26 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.01 Total: 16.11 kcal Atomic # 6 Polarization: 25.21 SS G_CDS: 6.26 Total: 31.48 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -8.75 Total: -122.85 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -1.15 Total: -46.59 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.65 -1.61 -75.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.017 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds