Wall clock time and date at job start Tue Mar 31 2020 23:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.64744 * 2 1 4 4 C 1.55154 * 110.71711 * 123.14241 * 2 1 3 5 5 C 1.54910 * 101.58439 * 154.04254 * 4 2 1 6 6 N 1.47427 * 104.82843 * 322.98552 * 5 4 2 7 7 C 1.34774 * 125.64907 * 204.09277 * 6 5 4 8 8 O 1.21350 * 119.99969 * 180.02562 * 7 6 5 9 9 C 1.49446 * 120.00108 * 0.02562 * 7 6 5 10 10 O 1.21351 * 119.99995 * 353.20240 * 9 7 6 11 11 N 1.34776 * 120.00114 * 173.20054 * 9 7 6 12 12 C 1.47076 * 120.87985 * 351.90293 * 11 9 7 13 13 C 1.53248 * 108.52010 * 231.20448 * 12 11 9 14 14 N 1.46895 * 109.34086 * 306.17312 * 13 12 11 15 15 C 1.46896 * 110.99921 * 187.25611 * 14 13 12 16 16 C 1.50704 * 109.47147 * 169.99872 * 15 14 13 17 17 H 1.07997 * 119.99788 * 359.72263 * 16 15 14 18 18 C 1.37881 * 119.99852 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46839 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47100 * 120.00157 * 20 18 16 23 23 H 1.48495 * 109.47139 * 239.99979 * 20 18 16 24 24 C 1.46897 * 111.27036 * 63.10073 * 14 13 12 25 25 C 1.47086 * 120.87950 * 171.92555 * 11 9 7 26 26 C 1.47025 * 108.70410 * 24.36049 * 6 5 4 27 27 H 1.08999 * 109.87964 * 239.29443 * 26 6 5 28 28 C 1.53001 * 109.88674 * 118.12476 * 26 6 5 29 29 O 1.42905 * 109.46805 * 66.45257 * 28 26 6 30 30 H 1.09001 * 109.47277 * 298.32113 * 1 2 3 31 31 H 1.09006 * 109.47040 * 58.31292 * 1 2 3 32 32 H 1.08989 * 109.47664 * 178.31126 * 1 2 3 33 33 H 1.09002 * 111.00837 * 35.96648 * 4 2 1 34 34 H 1.09007 * 111.00134 * 272.11455 * 4 2 1 35 35 H 1.08998 * 110.36848 * 204.15266 * 5 4 2 36 36 H 1.08997 * 110.36843 * 81.82650 * 5 4 2 37 37 H 1.09000 * 109.62622 * 111.50056 * 12 11 9 38 38 H 1.08998 * 109.63261 * 350.91611 * 12 11 9 39 39 H 1.09004 * 109.48903 * 186.21242 * 13 12 11 40 40 H 1.08993 * 109.48876 * 66.13435 * 13 12 11 41 41 H 1.08996 * 109.47625 * 49.99535 * 15 14 13 42 42 H 1.09005 * 109.47043 * 289.99559 * 15 14 13 43 43 H 0.96998 * 119.99564 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.49073 * 56.85833 * 24 14 13 45 45 H 1.09003 * 109.49240 * 176.92908 * 24 14 13 46 46 H 1.08994 * 109.62662 * 248.50040 * 25 11 9 47 47 H 1.08997 * 109.62980 * 9.08410 * 25 11 9 48 48 H 1.08992 * 109.47122 * 186.45647 * 28 26 6 49 49 H 1.08996 * 109.46840 * 306.46022 * 28 26 6 50 50 H 0.96693 * 113.99965 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0788 -0.7934 1.2151 5 6 3.4651 -1.2448 0.6914 6 7 3.2493 -1.5472 -0.7352 7 6 4.0003 -2.3788 -1.4842 8 8 3.7293 -2.5530 -2.6542 9 6 5.1666 -3.0863 -0.8740 10 8 5.5130 -2.8203 0.2583 11 7 5.8338 -4.0198 -1.5810 12 6 5.3294 -4.4847 -2.8820 13 6 5.2847 -6.0165 -2.8675 14 7 6.6052 -6.5382 -2.4908 15 6 6.6536 -7.9996 -2.6315 16 6 8.0762 -8.4723 -2.4770 17 1 8.8660 -7.7580 -2.2973 18 6 8.3701 -9.8162 -2.5704 19 7 7.4089 -10.6854 -2.7948 20 14 10.1333 -10.4022 -2.3783 21 1 11.0190 -9.2353 -2.1354 22 1 10.2212 -11.3388 -1.2293 23 1 10.5614 -11.0984 -3.6182 24 6 6.9715 -6.1279 -1.1286 25 6 7.0854 -4.6008 -1.0718 26 6 2.0831 -0.7865 -1.2073 27 1 1.3216 -1.4702 -1.5823 28 6 2.5066 0.1825 -2.3131 29 8 2.9223 -0.5585 -3.4621 30 1 -0.3634 0.4875 0.9047 31 1 -0.3633 0.5398 -0.8745 32 1 -0.3634 -1.0271 -0.0303 33 1 1.4468 -1.6529 1.4384 34 1 2.1819 -0.1489 2.0882 35 1 3.7991 -2.1365 1.2219 36 1 4.1929 -0.4411 0.8030 37 1 5.9953 -4.1454 -3.6754 38 1 4.3268 -4.0907 -3.0481 39 1 5.0186 -6.3819 -3.8594 40 1 4.5413 -6.3518 -2.1444 41 1 6.2816 -8.2824 -3.6162 42 1 6.0325 -8.4593 -1.8627 43 1 7.6158 -11.6308 -2.8608 44 1 6.2046 -6.4617 -0.4296 45 1 7.9287 -6.5744 -0.8593 46 1 7.9200 -4.2726 -1.6912 47 1 7.2437 -4.2835 -0.0411 48 1 1.6646 0.8219 -2.5780 49 1 3.3334 0.7984 -1.9594 50 1 3.2048 -0.0071 -4.2045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601461330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:31 Heat of formation + Delta-G solvation = -82.490680 kcal Electronic energy + Delta-G solvation = -31044.613695 eV Core-core repulsion = 26879.959940 eV Total energy + Delta-G solvation = -4164.653755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01852 -39.54126 -37.77528 -37.52368 -36.42223 -34.46067 -33.15036 -32.34187 -30.80877 -30.57434 -28.63437 -28.16477 -25.80924 -24.64216 -24.05156 -23.24735 -22.23947 -21.65565 -20.74425 -19.87682 -18.79929 -17.40248 -17.16740 -17.00005 -16.58932 -16.31527 -15.65556 -15.53695 -14.76630 -14.69932 -14.44539 -14.38480 -14.29077 -14.08706 -13.75751 -13.70213 -13.48628 -13.38998 -12.97636 -12.75523 -12.65487 -12.23088 -12.13580 -11.99283 -11.90948 -11.47034 -11.27448 -11.23652 -11.16435 -11.10699 -10.86748 -10.76713 -10.66931 -10.52958 -10.45479 -10.14945 -9.85230 -9.28674 -8.99941 -8.75228 -8.49335 -8.41891 -7.27326 -6.03475 -4.05118 1.58659 2.27702 3.30952 3.31359 3.38491 3.42094 3.43762 3.77482 4.02033 4.30123 4.36330 4.42269 4.58262 4.79820 4.89797 4.91844 4.93818 4.99949 5.07489 5.12107 5.26676 5.32145 5.40558 5.46468 5.50733 5.54155 5.61044 5.64116 5.70678 5.72084 5.76511 5.87572 5.88749 5.96546 5.99921 6.28584 6.34251 6.49036 6.54597 6.67310 7.14301 7.26789 7.32446 7.43168 7.51774 7.78427 7.81048 8.05640 8.12984 8.17201 8.51927 9.02536 9.59295 11.07419 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.002376 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.338253 B =11781.025049 C =12128.721432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.132 4.132 5 C 0.100 3.900 6 N -0.593 5.593 7 C 0.517 3.483 8 O -0.469 6.469 9 C 0.505 3.495 10 O -0.534 6.534 11 N -0.573 5.573 12 C 0.082 3.918 13 C 0.040 3.960 14 N -0.537 5.537 15 C 0.193 3.807 16 C -0.508 4.508 17 H 0.064 0.936 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.052 3.948 25 C 0.112 3.888 26 C 0.142 3.858 27 H 0.086 0.914 28 C 0.065 3.935 29 O -0.538 6.538 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.024 0.976 41 H 0.032 0.968 42 H -0.009 1.009 43 H 0.261 0.739 44 H 0.025 0.975 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.051 0.949 49 H 0.043 0.957 50 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.594 25.276 5.552 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.170 4.170 5 C -0.022 4.022 6 N -0.329 5.329 7 C 0.300 3.700 8 O -0.342 6.342 9 C 0.287 3.713 10 O -0.413 6.413 11 N -0.305 5.305 12 C -0.040 4.040 13 C -0.089 4.089 14 N -0.262 5.262 15 C 0.068 3.932 16 C -0.546 4.546 17 H 0.083 0.917 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.077 4.077 25 C -0.010 4.010 26 C 0.038 3.962 27 H 0.104 0.896 28 C -0.014 4.014 29 O -0.341 6.341 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.147 0.853 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.009 0.991 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.117 0.883 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.323 24.724 5.477 28.615 hybrid contribution 0.542 -0.358 0.229 0.689 sum -12.781 24.366 5.705 28.100 Atomic orbital electron populations 1.21772 0.93291 1.02608 1.02314 1.22199 0.96604 0.99396 0.93538 0.89449 1.22966 0.96206 1.00431 0.97402 1.22571 0.96608 1.02587 0.80481 1.48266 1.29378 1.43564 1.11678 1.19917 0.83460 0.80393 0.86223 1.90625 1.69209 1.59466 1.14932 1.20007 0.84215 0.81273 0.85770 1.90670 1.67875 1.65389 1.17348 1.48121 1.23972 1.37205 1.21243 1.22915 1.03481 0.94504 0.83053 1.22454 0.91601 0.93812 1.01049 1.62106 1.25043 1.16003 1.23072 1.19732 0.97387 0.79540 0.96535 1.21190 0.93080 0.91870 1.48496 0.91744 1.25004 0.97458 0.96790 0.95414 1.69972 1.31876 1.02128 1.49774 0.86436 0.84645 0.78705 0.77601 1.19628 1.21132 1.21022 1.22317 1.02332 0.92431 0.90579 1.22023 0.84523 0.94146 1.00317 1.21754 0.88001 0.93065 0.93360 0.89587 1.22533 0.98039 0.93422 0.87436 1.86933 1.87504 1.35353 1.24333 0.91717 0.92218 0.92047 0.90242 0.89461 0.88351 0.91121 0.90726 0.85252 0.89933 0.95806 0.95000 0.99136 0.92960 0.95725 0.88338 0.90395 0.89227 0.93054 0.93860 0.78571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 9.16 37.16 0.34 -0.33 16 2 C -0.10 -0.59 3.07 -88.78 -0.27 -0.86 16 3 H 0.09 0.43 7.84 -51.93 -0.41 0.03 16 4 C -0.13 -0.85 6.53 -24.58 -0.16 -1.01 16 5 C 0.10 0.97 5.96 -2.53 -0.02 0.96 16 6 N -0.59 -7.01 3.06 -163.51 -0.50 -7.51 16 7 C 0.52 7.66 7.50 -11.59 -0.09 7.58 16 8 O -0.47 -7.58 10.50 -18.60 -0.20 -7.77 16 9 C 0.50 8.18 7.69 -11.59 -0.09 8.09 16 10 O -0.53 -9.02 13.36 5.50 0.07 -8.95 16 11 N -0.57 -9.61 3.01 -172.97 -0.52 -10.13 16 12 C 0.08 1.36 6.10 -3.60 -0.02 1.34 16 13 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 14 N -0.54 -11.74 4.62 -235.76 -1.09 -12.83 16 15 C 0.19 5.06 4.72 -4.98 -0.02 5.03 16 16 C -0.51 -14.19 8.40 -34.44 -0.29 -14.48 16 17 H 0.06 1.77 7.14 -52.49 -0.37 1.40 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 20 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.05 1.04 5.46 -3.70 -0.02 1.02 16 25 C 0.11 1.89 6.62 -3.60 -0.02 1.86 16 26 C 0.14 1.31 2.90 -66.94 -0.19 1.11 16 27 H 0.09 0.90 7.80 -51.93 -0.41 0.50 16 28 C 0.07 0.55 6.47 37.16 0.24 0.80 16 29 O -0.54 -5.98 10.34 -59.33 -0.61 -6.59 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.33 8.11 -51.94 -0.42 -0.09 16 33 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 34 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 35 H 0.10 1.14 6.36 -51.93 -0.33 0.81 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.13 2.13 4.46 -54.12 -0.24 1.89 16 39 H 0.08 1.51 7.99 -51.93 -0.41 1.10 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.89 7.97 -51.93 -0.41 0.48 16 42 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 2.05 6.67 -51.93 -0.35 1.70 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.09 1.44 7.05 -51.93 -0.37 1.08 16 48 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.37 2.61 9.12 45.56 0.42 3.02 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -33.52 387.10 -9.54 -43.06 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.51 Total: 1.01 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -0.73 Total: 13.30 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -1.37 Total: -56.50 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.74 Total: -23.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.52 -9.54 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.429 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds