Wall clock time and date at job start Tue Mar 31 2020 23:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.64744 * 2 1 4 4 C 1.55154 * 110.71711 * 123.14241 * 2 1 3 5 5 C 1.54910 * 101.58439 * 154.04254 * 4 2 1 6 6 N 1.47427 * 104.82843 * 322.98552 * 5 4 2 7 7 C 1.34774 * 125.64907 * 204.09277 * 6 5 4 8 8 O 1.21350 * 119.99969 * 180.02562 * 7 6 5 9 9 C 1.49446 * 120.00108 * 0.02562 * 7 6 5 10 10 O 1.21351 * 119.99995 * 353.20240 * 9 7 6 11 11 N 1.34776 * 120.00114 * 173.20054 * 9 7 6 12 12 C 1.47076 * 120.87985 * 351.90293 * 11 9 7 13 13 C 1.53248 * 108.52010 * 231.20448 * 12 11 9 14 14 N 1.46895 * 109.34086 * 306.17312 * 13 12 11 15 15 C 1.46896 * 110.99921 * 187.25611 * 14 13 12 16 16 C 1.50704 * 109.47147 * 169.99872 * 15 14 13 17 17 H 1.07997 * 119.99788 * 359.72263 * 16 15 14 18 18 C 1.37881 * 119.99852 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00001 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46839 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47100 * 120.00157 * 20 18 16 23 23 H 1.48495 * 109.47139 * 239.99979 * 20 18 16 24 24 C 1.46897 * 111.27036 * 63.10073 * 14 13 12 25 25 C 1.47086 * 120.87950 * 171.92555 * 11 9 7 26 26 C 1.47025 * 108.70410 * 24.36049 * 6 5 4 27 27 H 1.08999 * 109.87964 * 239.29443 * 26 6 5 28 28 C 1.53001 * 109.88674 * 118.12476 * 26 6 5 29 29 O 1.42905 * 109.46805 * 66.45257 * 28 26 6 30 30 H 1.09001 * 109.47277 * 298.32113 * 1 2 3 31 31 H 1.09006 * 109.47040 * 58.31292 * 1 2 3 32 32 H 1.08989 * 109.47664 * 178.31126 * 1 2 3 33 33 H 1.09002 * 111.00837 * 35.96648 * 4 2 1 34 34 H 1.09007 * 111.00134 * 272.11455 * 4 2 1 35 35 H 1.08998 * 110.36848 * 204.15266 * 5 4 2 36 36 H 1.08997 * 110.36843 * 81.82650 * 5 4 2 37 37 H 1.09000 * 109.62622 * 111.50056 * 12 11 9 38 38 H 1.08998 * 109.63261 * 350.91611 * 12 11 9 39 39 H 1.09004 * 109.48903 * 186.21242 * 13 12 11 40 40 H 1.08993 * 109.48876 * 66.13435 * 13 12 11 41 41 H 1.08996 * 109.47625 * 49.99535 * 15 14 13 42 42 H 1.09005 * 109.47043 * 289.99559 * 15 14 13 43 43 H 0.96998 * 119.99564 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.49073 * 56.85833 * 24 14 13 45 45 H 1.09003 * 109.49240 * 176.92908 * 24 14 13 46 46 H 1.08994 * 109.62662 * 248.50040 * 25 11 9 47 47 H 1.08997 * 109.62980 * 9.08410 * 25 11 9 48 48 H 1.08992 * 109.47122 * 186.45647 * 28 26 6 49 49 H 1.08996 * 109.46840 * 306.46022 * 28 26 6 50 50 H 0.96693 * 113.99965 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0788 -0.7934 1.2151 5 6 3.4651 -1.2448 0.6914 6 7 3.2493 -1.5472 -0.7352 7 6 4.0003 -2.3788 -1.4842 8 8 3.7293 -2.5530 -2.6542 9 6 5.1666 -3.0863 -0.8740 10 8 5.5130 -2.8203 0.2583 11 7 5.8338 -4.0198 -1.5810 12 6 5.3294 -4.4847 -2.8820 13 6 5.2847 -6.0165 -2.8675 14 7 6.6052 -6.5382 -2.4908 15 6 6.6536 -7.9996 -2.6315 16 6 8.0762 -8.4723 -2.4770 17 1 8.8660 -7.7580 -2.2973 18 6 8.3701 -9.8162 -2.5704 19 7 7.4089 -10.6854 -2.7948 20 14 10.1333 -10.4022 -2.3783 21 1 11.0190 -9.2353 -2.1354 22 1 10.2212 -11.3388 -1.2293 23 1 10.5614 -11.0984 -3.6182 24 6 6.9715 -6.1279 -1.1286 25 6 7.0854 -4.6008 -1.0718 26 6 2.0831 -0.7865 -1.2073 27 1 1.3216 -1.4702 -1.5823 28 6 2.5066 0.1825 -2.3131 29 8 2.9223 -0.5585 -3.4621 30 1 -0.3634 0.4875 0.9047 31 1 -0.3633 0.5398 -0.8745 32 1 -0.3634 -1.0271 -0.0303 33 1 1.4468 -1.6529 1.4384 34 1 2.1819 -0.1489 2.0882 35 1 3.7991 -2.1365 1.2219 36 1 4.1929 -0.4411 0.8030 37 1 5.9953 -4.1454 -3.6754 38 1 4.3268 -4.0907 -3.0481 39 1 5.0186 -6.3819 -3.8594 40 1 4.5413 -6.3518 -2.1444 41 1 6.2816 -8.2824 -3.6162 42 1 6.0325 -8.4593 -1.8627 43 1 7.6158 -11.6308 -2.8608 44 1 6.2046 -6.4617 -0.4296 45 1 7.9287 -6.5744 -0.8593 46 1 7.9200 -4.2726 -1.6912 47 1 7.2437 -4.2835 -0.0411 48 1 1.6646 0.8219 -2.5780 49 1 3.3334 0.7984 -1.9594 50 1 3.2048 -0.0071 -4.2045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601461330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:30 Heat of formation + Delta-G solvation = -107.022697 kcal Electronic energy + Delta-G solvation = -31045.677483 eV Core-core repulsion = 26879.959940 eV Total energy + Delta-G solvation = -4165.717544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13044 -40.61346 -39.05227 -38.82650 -37.16786 -36.06965 -34.45636 -33.87600 -32.24760 -31.33052 -30.25950 -29.05187 -27.51097 -25.91751 -24.80524 -24.57432 -23.78709 -22.96990 -21.74069 -20.93661 -20.03061 -18.57955 -18.23846 -18.17991 -17.96266 -17.70600 -16.91494 -16.62048 -16.55647 -16.09307 -15.72655 -15.48410 -15.40825 -15.29037 -15.11743 -14.91467 -14.41477 -14.31630 -14.10817 -14.04903 -13.70946 -13.59313 -13.29119 -13.09340 -12.79706 -12.73550 -12.69721 -12.59461 -12.57510 -12.35910 -12.24638 -12.15158 -11.88343 -11.77787 -11.67266 -11.50141 -11.30872 -10.84319 -10.64369 -10.19128 -9.95017 -9.69706 -9.11100 -8.21717 -6.32076 0.36832 1.17537 1.41666 1.42349 1.56047 2.10822 2.28166 2.40494 3.06922 3.10389 3.20319 3.21371 3.53824 3.73241 3.91455 3.99201 4.02905 4.15041 4.17300 4.26489 4.26915 4.37258 4.41792 4.43184 4.51743 4.53807 4.56975 4.74594 4.79287 4.85270 4.88221 4.91094 4.97729 4.99006 5.04518 5.09821 5.11197 5.18358 5.20295 5.28486 5.38202 5.44496 5.62530 5.97875 6.01624 6.20772 6.25288 6.52873 6.60040 6.83441 6.93485 6.99698 7.37750 8.89924 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025054 B = 0.002376 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.338253 B =11781.025049 C =12128.721432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.107 0.893 4 C -0.123 4.123 5 C 0.094 3.906 6 N -0.589 5.589 7 C 0.512 3.488 8 O -0.488 6.488 9 C 0.503 3.497 10 O -0.542 6.542 11 N -0.581 5.581 12 C 0.099 3.901 13 C 0.041 3.959 14 N -0.540 5.540 15 C 0.208 3.792 16 C -0.522 4.522 17 H 0.068 0.932 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.261 1.261 22 H -0.280 1.280 23 H -0.279 1.279 24 C 0.056 3.944 25 C 0.123 3.877 26 C 0.132 3.868 27 H 0.070 0.930 28 C 0.064 3.936 29 O -0.568 6.568 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.085 0.915 40 H 0.015 0.985 41 H 0.008 0.992 42 H -0.041 1.041 43 H 0.264 0.736 44 H 0.011 0.989 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.100 0.900 48 H 0.079 0.921 49 H 0.047 0.953 50 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 27.855 6.362 31.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.125 0.875 4 C -0.161 4.161 5 C -0.028 4.028 6 N -0.323 5.323 7 C 0.295 3.705 8 O -0.364 6.364 9 C 0.287 3.713 10 O -0.421 6.421 11 N -0.314 5.314 12 C -0.023 4.023 13 C -0.088 4.088 14 N -0.264 5.264 15 C 0.082 3.918 16 C -0.560 4.560 17 H 0.086 0.914 18 C -0.198 4.198 19 N -0.576 5.576 20 Si 0.797 3.203 21 H -0.184 1.184 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.072 4.072 25 C 0.001 3.999 26 C 0.030 3.970 27 H 0.088 0.912 28 C -0.015 4.015 29 O -0.374 6.374 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.154 0.846 39 H 0.104 0.896 40 H 0.033 0.967 41 H 0.026 0.974 42 H -0.023 1.023 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.118 0.882 48 H 0.097 0.903 49 H 0.065 0.935 50 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.327 27.363 6.312 31.084 hybrid contribution 0.447 -1.110 0.021 1.197 sum -12.881 26.253 6.333 29.921 Atomic orbital electron populations 1.21768 0.92097 1.02346 1.03511 1.22224 0.97385 0.99614 0.91311 0.87469 1.22968 0.93795 1.00876 0.98434 1.22705 0.99005 1.01873 0.79229 1.48405 1.29151 1.42395 1.12395 1.19650 0.83552 0.81079 0.86237 1.90602 1.69748 1.60490 1.15528 1.20367 0.84442 0.80981 0.85548 1.90663 1.68151 1.65599 1.17644 1.48165 1.24105 1.37748 1.21348 1.22774 1.04096 0.92185 0.83246 1.22528 0.89864 0.95600 1.00821 1.62049 1.26849 1.13153 1.24397 1.19391 0.96245 0.82162 0.94004 1.21482 0.93703 0.92361 1.48468 0.91418 1.25952 1.02123 0.96908 0.94816 1.70102 1.34323 1.02584 1.50599 0.85289 0.79021 0.78360 0.77676 1.18443 1.20534 1.20478 1.22285 1.01175 0.94720 0.89068 1.21875 0.85130 0.91586 1.01283 1.22088 0.86604 0.93122 0.95213 0.91178 1.22641 0.99154 0.93164 0.86498 1.86886 1.87838 1.37131 1.25592 0.90107 0.91467 0.93060 0.90554 0.86810 0.90517 0.90446 0.90213 0.84594 0.89642 0.96697 0.97400 1.02334 0.92680 0.97025 0.89390 0.89336 0.88168 0.90274 0.93493 0.76952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.16 71.98 0.66 -0.25 16 2 C -0.09 -0.78 3.07 -9.60 -0.03 -0.81 16 3 H 0.11 0.62 7.84 -2.39 -0.02 0.60 16 4 C -0.12 -1.28 6.53 31.99 0.21 -1.07 16 5 C 0.09 1.70 5.96 86.85 0.52 2.22 16 6 N -0.59 -13.38 3.06 -789.58 -2.42 -15.80 16 7 C 0.51 15.02 7.50 87.27 0.65 15.68 16 8 O -0.49 -15.68 10.50 19.79 0.21 -15.47 16 9 C 0.50 16.14 7.69 87.27 0.67 16.81 16 10 O -0.54 -18.03 13.36 -3.25 -0.04 -18.08 16 11 N -0.58 -19.34 3.01 -819.52 -2.47 -21.80 16 12 C 0.10 3.27 6.10 86.35 0.53 3.80 16 13 C 0.04 1.58 5.62 86.39 0.49 2.07 16 14 N -0.54 -24.20 4.62 -899.82 -4.16 -28.36 16 15 C 0.21 11.37 4.72 85.56 0.40 11.77 16 16 C -0.52 -29.71 8.40 25.60 0.22 -29.50 16 17 H 0.07 3.74 7.14 -2.91 -0.02 3.72 16 18 C 0.00 0.00 5.46 84.66 0.46 0.46 16 19 N -0.94 -56.96 13.29 21.45 0.28 -56.67 16 20 Si 0.97 44.49 29.54 68.60 2.03 46.51 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 C 0.06 2.28 5.46 86.38 0.47 2.76 16 25 C 0.12 4.11 6.62 86.35 0.57 4.68 16 26 C 0.13 2.23 2.90 45.35 0.13 2.36 16 27 H 0.07 1.42 7.80 -2.39 -0.02 1.40 16 28 C 0.06 0.96 6.47 71.98 0.47 1.43 16 29 O -0.57 -12.07 10.34 -125.94 -1.30 -13.37 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.05 0.45 8.11 -2.39 -0.02 0.43 16 33 H 0.08 0.87 8.05 -2.39 -0.02 0.85 16 34 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.08 1.75 6.36 -2.39 -0.02 1.73 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.14 4.48 4.46 -37.10 -0.17 4.32 16 39 H 0.09 3.23 7.99 -2.38 -0.02 3.21 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 42 H -0.04 -2.46 8.12 -2.38 -0.02 -2.48 16 43 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.09 3.72 6.67 -2.39 -0.02 3.71 16 46 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 47 H 0.10 3.15 7.05 -2.39 -0.02 3.13 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.38 5.04 9.12 -74.06 -0.68 4.37 16 Total: -1.00 -73.46 387.10 -1.34 -74.80 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.11 Total: 15.84 kcal Atomic # 6 Polarization: 25.98 SS G_CDS: 6.42 Total: 32.39 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -8.76 Total: -122.63 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -1.14 Total: -46.92 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -73.46 -1.34 -74.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.219 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds