Wall clock time and date at job start Tue Mar 31 2020 23:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.77867 * 2 1 4 4 C 1.55153 * 110.72237 * 123.24083 * 2 1 3 5 5 C 1.55123 * 101.48771 * 82.69564 * 4 2 1 6 6 N 1.47422 * 104.72525 * 37.29519 * 5 4 2 7 7 C 1.34776 * 125.65148 * 155.81393 * 6 5 4 8 8 O 1.21354 * 120.00051 * 179.69547 * 7 6 5 9 9 C 1.49453 * 119.99945 * 359.69728 * 7 6 5 10 10 O 1.21342 * 119.99709 * 6.55317 * 9 7 6 11 11 N 1.34777 * 119.99735 * 186.55185 * 9 7 6 12 12 C 1.47078 * 120.87520 * 178.44158 * 11 9 7 13 13 C 1.53240 * 108.52193 * 231.20236 * 12 11 9 14 14 N 1.46902 * 109.34371 * 306.18027 * 13 12 11 15 15 C 1.46896 * 110.99914 * 187.25211 * 14 13 12 16 16 C 1.50703 * 109.47053 * 169.99812 * 15 14 13 17 17 H 1.08003 * 119.99598 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00195 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00183 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99798 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47238 * 89.99872 * 20 18 16 22 22 H 1.48499 * 109.46953 * 209.99814 * 20 18 16 23 23 H 1.48500 * 109.47187 * 329.99774 * 20 18 16 24 24 C 1.46893 * 111.27114 * 63.09501 * 14 13 12 25 25 C 1.47075 * 120.88354 * 358.46656 * 11 9 7 26 26 C 1.47025 * 108.69883 * 335.55640 * 6 5 4 27 27 H 1.08998 * 109.88367 * 120.85691 * 26 6 5 28 28 C 1.53001 * 109.88034 * 241.86541 * 26 6 5 29 29 O 1.42900 * 109.47086 * 293.54690 * 28 26 6 30 30 H 1.09003 * 109.47418 * 183.23684 * 1 2 3 31 31 H 1.08996 * 109.47320 * 303.23652 * 1 2 3 32 32 H 1.09000 * 109.47484 * 63.23720 * 1 2 3 33 33 H 1.09001 * 111.00725 * 200.93690 * 4 2 1 34 34 H 1.09007 * 111.00061 * 324.74942 * 4 2 1 35 35 H 1.09003 * 110.49824 * 278.45520 * 5 4 2 36 36 H 1.09001 * 110.34262 * 156.06117 * 5 4 2 37 37 H 1.09003 * 109.62564 * 111.49786 * 12 11 9 38 38 H 1.08991 * 109.79513 * 351.01255 * 12 11 9 39 39 H 1.09002 * 109.49543 * 186.21193 * 13 12 11 40 40 H 1.09004 * 109.51014 * 66.15161 * 13 12 11 41 41 H 1.09002 * 109.46928 * 289.99432 * 15 14 13 42 42 H 1.08997 * 109.47461 * 49.99130 * 15 14 13 43 43 H 0.96998 * 119.99881 * 180.02562 * 19 18 16 44 44 H 1.09007 * 109.48994 * 56.86003 * 24 14 13 45 45 H 1.09003 * 109.49560 * 176.93706 * 24 14 13 46 46 H 1.09000 * 109.62772 * 248.50124 * 25 11 9 47 47 H 1.08997 * 109.63095 * 8.88756 * 25 11 9 48 48 H 1.09002 * 109.47017 * 53.54582 * 28 26 6 49 49 H 1.09001 * 109.47288 * 173.54534 * 28 26 6 50 50 H 0.96709 * 113.99943 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0790 -0.7955 1.2137 5 6 2.0075 -2.2524 0.6861 6 7 2.3716 -2.1532 -0.7391 7 6 2.8850 -3.1477 -1.4898 8 8 3.1432 -2.9537 -2.6596 9 6 3.1363 -4.4896 -0.8817 10 8 2.7696 -4.7203 0.2517 11 7 3.7702 -5.4434 -1.5923 12 6 4.0577 -6.7592 -1.0013 13 6 5.5429 -7.0730 -1.2111 14 7 5.8699 -6.9479 -2.6378 15 6 7.2395 -7.4061 -2.9061 16 6 7.4565 -7.4962 -4.3947 17 1 6.6567 -7.2392 -5.0734 18 6 8.6759 -7.9067 -4.8900 19 7 8.8651 -7.9859 -6.1891 20 14 10.0594 -8.3505 -3.7159 21 1 9.9855 -9.7970 -3.3879 22 1 11.3662 -8.0543 -4.3562 23 1 9.9265 -7.5531 -2.4702 24 6 5.6730 -5.5712 -3.1109 25 6 4.1932 -5.1959 -2.9790 26 6 2.0760 -0.7912 -1.2073 27 1 2.9862 -0.3216 -1.5801 28 6 1.0236 -0.8393 -2.3168 29 8 1.5726 -1.4869 -3.4663 30 1 -0.3634 -1.0260 0.0580 31 1 -0.3634 0.5632 0.8595 32 1 -0.3634 0.4627 -0.9176 33 1 3.1061 -0.5073 1.4374 34 1 1.4399 -0.6657 2.0872 35 1 0.9974 -2.6480 0.7928 36 1 2.7208 -2.8831 1.2168 37 1 3.4500 -7.5208 -1.4900 38 1 3.8343 -6.7415 0.0653 39 1 5.7504 -8.0899 -0.8781 40 1 6.1479 -6.3716 -0.6364 41 1 7.9497 -6.6989 -2.4776 42 1 7.3887 -8.3880 -2.4570 43 1 9.7229 -8.2750 -6.5375 44 1 6.2759 -4.8904 -2.5098 45 1 5.9749 -5.4990 -4.1558 46 1 3.5985 -5.8073 -3.6578 47 1 4.0568 -4.1419 -3.2209 48 1 0.1530 -1.3949 -1.9680 49 1 0.7256 0.1758 -2.5793 50 1 0.9593 -1.5527 -4.2111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601461331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:34 Heat of formation + Delta-G solvation = -69.349036 kcal Electronic energy + Delta-G solvation = -31321.820483 eV Core-core repulsion = 27157.736592 eV Total energy + Delta-G solvation = -4164.083891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.11058 -39.67700 -37.87808 -37.61729 -36.37020 -34.53140 -33.06199 -32.32552 -30.86744 -30.62645 -28.83389 -27.87647 -26.11703 -25.25264 -24.25406 -23.36497 -22.27893 -21.29456 -20.45325 -19.50700 -18.91302 -17.62409 -17.25464 -16.89351 -16.82790 -16.58279 -15.71063 -15.44559 -14.78425 -14.67774 -14.60035 -14.52425 -14.38488 -14.02720 -13.94713 -13.73939 -13.48270 -13.15303 -13.00685 -12.77010 -12.52091 -12.48565 -12.38523 -12.21729 -11.99129 -11.52395 -11.47459 -11.34193 -11.18956 -11.11233 -10.91588 -10.73127 -10.66848 -10.42167 -10.27839 -10.07224 -9.88512 -9.30477 -8.91784 -8.76230 -8.56612 -8.51494 -7.40479 -6.04848 -4.02405 1.56309 2.25018 3.28638 3.30555 3.36068 3.38222 3.40329 3.82032 3.99980 4.25871 4.34071 4.42210 4.57334 4.74426 4.81204 4.87741 4.91674 5.01300 5.06396 5.17072 5.25094 5.26414 5.29733 5.42585 5.47948 5.50643 5.57597 5.60185 5.65009 5.69676 5.70611 5.85076 5.85994 5.95860 5.97818 6.14586 6.25017 6.49988 6.54963 6.63450 6.85834 6.97743 7.12643 7.42513 7.56681 7.57547 7.82416 7.86911 8.01352 8.12280 8.64842 9.03448 9.56648 11.08109 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.002649 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.668181 B =10565.990624 C =11183.204699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.132 4.132 5 C 0.101 3.899 6 N -0.590 5.590 7 C 0.518 3.482 8 O -0.463 6.463 9 C 0.505 3.495 10 O -0.538 6.538 11 N -0.571 5.571 12 C 0.115 3.885 13 C 0.039 3.961 14 N -0.528 5.528 15 C 0.162 3.838 16 C -0.510 4.510 17 H 0.082 0.918 18 C 0.069 3.931 19 N -0.899 5.899 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.053 3.947 25 C 0.057 3.943 26 C 0.141 3.859 27 H 0.086 0.914 28 C 0.064 3.936 29 O -0.539 6.539 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.027 0.973 41 H -0.012 1.012 42 H 0.025 0.975 43 H 0.264 0.736 44 H 0.022 0.978 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.152 0.848 48 H 0.047 0.953 49 H 0.052 0.948 50 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.721 17.378 14.692 29.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.112 0.888 4 C -0.170 4.170 5 C -0.022 4.022 6 N -0.327 5.327 7 C 0.301 3.699 8 O -0.336 6.336 9 C 0.288 3.712 10 O -0.417 6.417 11 N -0.303 5.303 12 C -0.007 4.007 13 C -0.090 4.090 14 N -0.253 5.253 15 C 0.036 3.964 16 C -0.548 4.548 17 H 0.100 0.900 18 C -0.133 4.133 19 N -0.538 5.538 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.076 4.076 25 C -0.064 4.064 26 C 0.038 3.962 27 H 0.104 0.896 28 C -0.016 4.016 29 O -0.343 6.343 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.045 0.955 41 H 0.006 0.994 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.040 0.960 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.168 0.832 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -18.368 16.875 14.566 28.884 hybrid contribution 0.950 0.079 0.621 1.138 sum -17.417 16.954 15.187 28.661 Atomic orbital electron populations 1.21921 0.93982 1.02494 1.02331 1.22193 0.96588 0.99338 0.93552 0.88791 1.22981 1.02235 0.94402 0.97430 1.22615 1.01989 0.97052 0.80515 1.48254 1.62046 1.10588 1.11775 1.19913 0.79021 0.84784 0.86164 1.90465 1.47662 1.80586 1.14901 1.19973 0.79896 0.85518 0.85835 1.90661 1.51878 1.81021 1.18096 1.48161 1.53982 1.12902 1.15239 1.21877 0.96560 0.83021 0.99291 1.22435 0.94227 1.01137 0.91198 1.61943 1.28767 1.21471 1.13135 1.20175 0.83461 0.94443 0.98298 1.21022 0.99196 1.44984 0.89607 0.89993 1.24894 0.98250 0.95216 0.94925 1.69892 1.24474 1.47893 1.11545 0.86870 0.82062 0.79243 0.81618 1.20142 1.21201 1.19358 1.22384 0.93906 0.88537 1.02787 1.23483 0.95578 1.07668 0.79626 1.21701 0.98495 0.82526 0.93468 0.89615 1.22643 0.95397 0.96237 0.87277 1.86929 1.42246 1.80957 1.24162 0.92090 0.91919 0.91961 0.90282 0.89423 0.91113 0.88432 0.90292 0.89213 0.89908 0.95530 0.99418 0.95708 0.92650 0.95990 0.87879 0.90815 0.83199 0.93489 0.93007 0.78508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 7.96 37.16 0.30 -0.41 16 2 C -0.10 -0.57 3.55 -88.79 -0.32 -0.89 16 3 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 4 C -0.13 -0.82 6.59 -24.47 -0.16 -0.99 16 5 C 0.10 0.95 5.66 -2.41 -0.01 0.94 16 6 N -0.59 -6.87 3.06 -163.38 -0.50 -7.37 16 7 C 0.52 7.65 7.57 -11.58 -0.09 7.56 16 8 O -0.46 -7.60 10.31 -18.62 -0.19 -7.79 16 9 C 0.51 7.98 7.72 -11.58 -0.09 7.89 16 10 O -0.54 -8.69 13.34 5.50 0.07 -8.62 16 11 N -0.57 -9.36 3.01 -172.98 -0.52 -9.88 16 12 C 0.11 1.79 6.59 -3.60 -0.02 1.76 16 13 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 14 N -0.53 -11.23 4.62 -235.76 -1.09 -12.32 16 15 C 0.16 3.97 3.79 -4.98 -0.02 3.96 16 16 C -0.51 -14.50 8.96 -34.44 -0.31 -14.81 16 17 H 0.08 2.52 7.37 -52.48 -0.39 2.14 16 18 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 20 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 24 C 0.05 1.05 5.46 -3.71 -0.02 1.03 16 25 C 0.06 0.99 6.36 -3.61 -0.02 0.97 16 26 C 0.14 1.31 3.22 -66.95 -0.22 1.09 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 C 0.06 0.55 5.31 37.16 0.20 0.74 16 29 O -0.54 -6.15 10.33 -59.35 -0.61 -6.76 16 30 H 0.06 0.34 6.97 -51.93 -0.36 -0.02 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.26 6.57 -51.93 -0.34 -0.08 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.40 8.04 -51.92 -0.42 -0.02 16 35 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 36 H 0.10 1.09 6.33 -51.93 -0.33 0.76 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.30 7.08 -51.93 -0.37 0.93 16 39 H 0.08 1.35 7.99 -51.93 -0.41 0.93 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H -0.01 -0.30 7.18 -51.93 -0.37 -0.67 16 42 H 0.02 0.60 7.40 -51.93 -0.38 0.22 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 45 H 0.10 2.27 6.67 -51.93 -0.35 1.93 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 47 H 0.15 2.62 3.91 -56.56 -0.22 2.40 16 48 H 0.05 0.39 6.94 -51.93 -0.36 0.03 16 49 H 0.05 0.33 7.44 -51.93 -0.39 -0.06 16 50 H 0.37 2.75 9.12 45.56 0.42 3.17 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -34.10 376.81 -9.18 -43.28 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.22 Total: 2.23 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -0.90 Total: 11.41 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -1.34 Total: -56.40 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.73 Total: -23.17 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.10 -9.18 -43.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.066 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds