Wall clock time and date at job start Tue Mar 31 2020 23:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.77867 * 2 1 4 4 C 1.55153 * 110.72237 * 123.24083 * 2 1 3 5 5 C 1.55123 * 101.48771 * 82.69564 * 4 2 1 6 6 N 1.47422 * 104.72525 * 37.29519 * 5 4 2 7 7 C 1.34776 * 125.65148 * 155.81393 * 6 5 4 8 8 O 1.21354 * 120.00051 * 179.69547 * 7 6 5 9 9 C 1.49453 * 119.99945 * 359.69728 * 7 6 5 10 10 O 1.21342 * 119.99709 * 6.55317 * 9 7 6 11 11 N 1.34777 * 119.99735 * 186.55185 * 9 7 6 12 12 C 1.47078 * 120.87520 * 178.44158 * 11 9 7 13 13 C 1.53240 * 108.52193 * 231.20236 * 12 11 9 14 14 N 1.46902 * 109.34371 * 306.18027 * 13 12 11 15 15 C 1.46896 * 110.99914 * 187.25211 * 14 13 12 16 16 C 1.50703 * 109.47053 * 169.99812 * 15 14 13 17 17 H 1.08003 * 119.99598 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00195 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00183 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99798 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47238 * 89.99872 * 20 18 16 22 22 H 1.48499 * 109.46953 * 209.99814 * 20 18 16 23 23 H 1.48500 * 109.47187 * 329.99774 * 20 18 16 24 24 C 1.46893 * 111.27114 * 63.09501 * 14 13 12 25 25 C 1.47075 * 120.88354 * 358.46656 * 11 9 7 26 26 C 1.47025 * 108.69883 * 335.55640 * 6 5 4 27 27 H 1.08998 * 109.88367 * 120.85691 * 26 6 5 28 28 C 1.53001 * 109.88034 * 241.86541 * 26 6 5 29 29 O 1.42900 * 109.47086 * 293.54690 * 28 26 6 30 30 H 1.09003 * 109.47418 * 183.23684 * 1 2 3 31 31 H 1.08996 * 109.47320 * 303.23652 * 1 2 3 32 32 H 1.09000 * 109.47484 * 63.23720 * 1 2 3 33 33 H 1.09001 * 111.00725 * 200.93690 * 4 2 1 34 34 H 1.09007 * 111.00061 * 324.74942 * 4 2 1 35 35 H 1.09003 * 110.49824 * 278.45520 * 5 4 2 36 36 H 1.09001 * 110.34262 * 156.06117 * 5 4 2 37 37 H 1.09003 * 109.62564 * 111.49786 * 12 11 9 38 38 H 1.08991 * 109.79513 * 351.01255 * 12 11 9 39 39 H 1.09002 * 109.49543 * 186.21193 * 13 12 11 40 40 H 1.09004 * 109.51014 * 66.15161 * 13 12 11 41 41 H 1.09002 * 109.46928 * 289.99432 * 15 14 13 42 42 H 1.08997 * 109.47461 * 49.99130 * 15 14 13 43 43 H 0.96998 * 119.99881 * 180.02562 * 19 18 16 44 44 H 1.09007 * 109.48994 * 56.86003 * 24 14 13 45 45 H 1.09003 * 109.49560 * 176.93706 * 24 14 13 46 46 H 1.09000 * 109.62772 * 248.50124 * 25 11 9 47 47 H 1.08997 * 109.63095 * 8.88756 * 25 11 9 48 48 H 1.09002 * 109.47017 * 53.54582 * 28 26 6 49 49 H 1.09001 * 109.47288 * 173.54534 * 28 26 6 50 50 H 0.96709 * 113.99943 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0790 -0.7955 1.2137 5 6 2.0075 -2.2524 0.6861 6 7 2.3716 -2.1532 -0.7391 7 6 2.8850 -3.1477 -1.4898 8 8 3.1432 -2.9537 -2.6596 9 6 3.1363 -4.4896 -0.8817 10 8 2.7696 -4.7203 0.2517 11 7 3.7702 -5.4434 -1.5923 12 6 4.0577 -6.7592 -1.0013 13 6 5.5429 -7.0730 -1.2111 14 7 5.8699 -6.9479 -2.6378 15 6 7.2395 -7.4061 -2.9061 16 6 7.4565 -7.4962 -4.3947 17 1 6.6567 -7.2392 -5.0734 18 6 8.6759 -7.9067 -4.8900 19 7 8.8651 -7.9859 -6.1891 20 14 10.0594 -8.3505 -3.7159 21 1 9.9855 -9.7970 -3.3879 22 1 11.3662 -8.0543 -4.3562 23 1 9.9265 -7.5531 -2.4702 24 6 5.6730 -5.5712 -3.1109 25 6 4.1932 -5.1959 -2.9790 26 6 2.0760 -0.7912 -1.2073 27 1 2.9862 -0.3216 -1.5801 28 6 1.0236 -0.8393 -2.3168 29 8 1.5726 -1.4869 -3.4663 30 1 -0.3634 -1.0260 0.0580 31 1 -0.3634 0.5632 0.8595 32 1 -0.3634 0.4627 -0.9176 33 1 3.1061 -0.5073 1.4374 34 1 1.4399 -0.6657 2.0872 35 1 0.9974 -2.6480 0.7928 36 1 2.7208 -2.8831 1.2168 37 1 3.4500 -7.5208 -1.4900 38 1 3.8343 -6.7415 0.0653 39 1 5.7504 -8.0899 -0.8781 40 1 6.1479 -6.3716 -0.6364 41 1 7.9497 -6.6989 -2.4776 42 1 7.3887 -8.3880 -2.4570 43 1 9.7229 -8.2750 -6.5375 44 1 6.2759 -4.8904 -2.5098 45 1 5.9749 -5.4990 -4.1558 46 1 3.5985 -5.8073 -3.6578 47 1 4.0568 -4.1419 -3.2209 48 1 0.1530 -1.3949 -1.9680 49 1 0.7256 0.1758 -2.5793 50 1 0.9593 -1.5527 -4.2111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601461331.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:33 Heat of formation + Delta-G solvation = -95.498201 kcal Electronic energy + Delta-G solvation = -31322.954395 eV Core-core repulsion = 27157.736592 eV Total energy + Delta-G solvation = -4165.217804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.18407 -40.70912 -39.11453 -38.91671 -37.14822 -36.06941 -34.47622 -33.81045 -32.24561 -31.37918 -30.61986 -28.67894 -27.61038 -25.91859 -25.48616 -24.76323 -23.52319 -22.81446 -21.66276 -20.40406 -20.03539 -18.96927 -18.49392 -18.10863 -18.02210 -17.76632 -16.89476 -16.56361 -16.47122 -16.06499 -15.76436 -15.64138 -15.43968 -15.29617 -15.11709 -15.00277 -14.59173 -14.47801 -14.15203 -13.91387 -13.76181 -13.53434 -13.22727 -13.20869 -13.08489 -12.93031 -12.77919 -12.66420 -12.47628 -12.27421 -12.09505 -11.94365 -11.86792 -11.81914 -11.51398 -11.44773 -11.41145 -10.80173 -10.78585 -10.04539 -9.99608 -9.70214 -9.11302 -8.28689 -6.32388 0.36587 1.17609 1.34092 1.35612 1.45977 2.12164 2.27994 2.33664 3.03082 3.05464 3.14385 3.23516 3.52638 3.71186 3.90649 3.99286 4.02889 4.15643 4.18088 4.26101 4.26857 4.34941 4.37138 4.42567 4.50946 4.55241 4.66787 4.71284 4.75136 4.78833 4.84311 4.88236 4.93669 4.96628 4.98304 5.07070 5.10871 5.15659 5.21413 5.23304 5.38095 5.45762 5.50700 5.87044 6.04565 6.21806 6.26849 6.58743 6.62768 6.73604 6.94469 7.00400 7.30953 8.87745 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020695 B = 0.002649 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.668181 B =10565.990624 C =11183.204699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.115 0.885 4 C -0.123 4.123 5 C 0.095 3.905 6 N -0.585 5.585 7 C 0.510 3.490 8 O -0.488 6.488 9 C 0.505 3.495 10 O -0.540 6.540 11 N -0.578 5.578 12 C 0.120 3.880 13 C 0.041 3.959 14 N -0.541 5.541 15 C 0.172 3.828 16 C -0.517 4.517 17 H 0.040 0.960 18 C 0.009 3.991 19 N -0.946 5.946 20 Si 0.948 3.052 21 H -0.262 1.262 22 H -0.282 1.282 23 H -0.255 1.255 24 C 0.059 3.941 25 C 0.075 3.925 26 C 0.130 3.870 27 H 0.070 0.930 28 C 0.063 3.937 29 O -0.571 6.571 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.026 0.974 41 H -0.016 1.016 42 H 0.035 0.965 43 H 0.267 0.733 44 H 0.017 0.983 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.154 0.846 48 H 0.051 0.949 49 H 0.078 0.922 50 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.675 18.545 17.708 32.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.133 0.867 4 C -0.161 4.161 5 C -0.027 4.027 6 N -0.320 5.320 7 C 0.293 3.707 8 O -0.363 6.363 9 C 0.288 3.712 10 O -0.419 6.419 11 N -0.310 5.310 12 C -0.002 4.002 13 C -0.088 4.088 14 N -0.266 5.266 15 C 0.045 3.955 16 C -0.555 4.555 17 H 0.059 0.941 18 C -0.189 4.189 19 N -0.587 5.587 20 Si 0.771 3.229 21 H -0.187 1.187 22 H -0.208 1.208 23 H -0.179 1.179 24 C -0.070 4.070 25 C -0.047 4.047 26 C 0.028 3.972 27 H 0.088 0.912 28 C -0.016 4.016 29 O -0.377 6.377 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.044 0.956 41 H 0.002 0.998 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.036 0.964 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.170 0.830 48 H 0.069 0.931 49 H 0.096 0.904 50 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -19.373 18.069 17.631 31.823 hybrid contribution 1.132 -0.214 -0.323 1.197 sum -18.241 17.855 17.309 30.840 Atomic orbital electron populations 1.21919 0.92781 1.02244 1.03552 1.22230 0.97423 0.99563 0.91301 0.86734 1.22984 1.03018 0.91771 0.98303 1.22759 1.01528 0.99265 0.79142 1.48396 1.60222 1.10813 1.12544 1.19781 0.79688 0.85053 0.86163 1.90437 1.49254 1.80861 1.15776 1.20224 0.79406 0.85844 0.85687 1.90654 1.51890 1.81218 1.18119 1.48178 1.54489 1.13526 1.14798 1.21888 0.95181 0.82866 1.00277 1.22537 0.95512 1.02237 0.88525 1.61860 1.26773 1.21957 1.16002 1.19946 0.85273 0.94864 0.95389 1.21233 0.98319 1.44533 0.91445 0.94146 1.25832 1.01227 0.95096 0.96712 1.70047 1.25495 1.49300 1.13843 0.85712 0.78106 0.79649 0.79428 1.18689 1.20784 1.17874 1.22260 0.95809 0.88140 1.00772 1.23232 0.93337 1.07675 0.80415 1.22039 0.98415 0.81381 0.95376 0.91227 1.22769 0.94982 0.97517 0.86309 1.86890 1.43778 1.81577 1.25469 0.93128 0.90164 0.91267 0.90236 0.86906 0.90603 0.90259 0.89629 0.87564 0.88160 0.95597 0.99834 0.94679 0.92394 0.96430 0.90945 0.91266 0.82972 0.93115 0.90362 0.77026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.96 71.98 0.57 -0.33 16 2 C -0.09 -0.76 3.55 -9.61 -0.03 -0.79 16 3 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 4 C -0.12 -1.19 6.59 32.06 0.21 -0.98 16 5 C 0.09 1.65 5.66 86.93 0.49 2.14 16 6 N -0.59 -13.17 3.06 -789.18 -2.42 -15.59 16 7 C 0.51 15.08 7.57 87.27 0.66 15.74 16 8 O -0.49 -16.34 10.31 19.80 0.20 -16.14 16 9 C 0.51 15.72 7.72 87.27 0.67 16.40 16 10 O -0.54 -16.89 13.34 -3.22 -0.04 -16.93 16 11 N -0.58 -18.75 3.01 -819.55 -2.47 -21.21 16 12 C 0.12 3.56 6.59 86.35 0.57 4.13 16 13 C 0.04 1.37 5.62 86.38 0.49 1.85 16 14 N -0.54 -23.12 4.62 -899.82 -4.16 -27.28 16 15 C 0.17 8.42 3.79 85.56 0.32 8.75 16 16 C -0.52 -30.33 8.96 25.60 0.23 -30.10 16 17 H 0.04 2.64 7.37 -2.91 -0.02 2.62 16 18 C 0.01 0.52 5.47 84.65 0.46 0.98 16 19 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 20 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 24 C 0.06 2.45 5.46 86.38 0.47 2.92 16 25 C 0.07 2.65 6.36 86.35 0.55 3.20 16 26 C 0.13 2.24 3.22 45.34 0.15 2.38 16 27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 28 C 0.06 0.99 5.31 71.98 0.38 1.37 16 29 O -0.57 -12.95 10.33 -125.92 -1.30 -14.25 16 30 H 0.05 0.43 6.97 -2.39 -0.02 0.42 16 31 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.07 0.35 6.57 -2.39 -0.02 0.33 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 0.58 8.04 -2.38 -0.02 0.56 16 35 H 0.08 1.26 7.67 -2.39 -0.02 1.24 16 36 H 0.08 1.69 6.33 -2.39 -0.02 1.68 16 37 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.11 2.85 7.08 -2.39 -0.02 2.84 16 39 H 0.10 3.03 7.99 -2.39 -0.02 3.01 16 40 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 41 H -0.02 -0.79 7.18 -2.39 -0.02 -0.81 16 42 H 0.04 1.65 7.40 -2.39 -0.02 1.63 16 43 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.07 3.42 6.67 -2.39 -0.02 3.41 16 46 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.15 5.52 3.91 -75.63 -0.30 5.22 16 48 H 0.05 0.76 6.94 -2.39 -0.02 0.74 16 49 H 0.08 0.81 7.44 -2.39 -0.02 0.79 16 50 H 0.38 5.70 9.12 -74.05 -0.68 5.03 16 Total: -1.00 -75.74 376.81 -1.86 -77.60 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.06 Total: 19.17 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 6.20 Total: 27.66 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -8.74 Total: -123.55 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -1.14 Total: -47.32 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -75.74 -1.86 -77.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601461331.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.902 kcal (2) G-P(sol) polarization free energy of solvation -75.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds