Wall clock time and date at job start Tue Mar 31 2020 23:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47945 * 2 1 4 4 C 1.53084 * 109.49340 * 239.97054 * 2 1 3 5 5 C 1.53178 * 109.16485 * 182.40301 * 4 2 1 6 6 H 1.08997 * 109.54550 * 297.11009 * 5 4 2 7 7 N 1.46508 * 109.54334 * 176.93819 * 5 4 2 8 8 C 1.34774 * 120.00000 * 155.00107 * 7 5 4 9 9 O 1.21346 * 119.99974 * 359.97438 * 8 7 5 10 10 C 1.49449 * 119.99809 * 180.02562 * 8 7 5 11 11 O 1.21347 * 120.00394 * 353.34951 * 10 8 7 12 12 N 1.34777 * 119.99931 * 173.35687 * 10 8 7 13 13 C 1.47080 * 120.88342 * 181.22076 * 12 10 8 14 14 C 1.53693 * 108.27966 * 128.75148 * 13 12 10 15 15 N 1.46907 * 109.25503 * 54.08545 * 14 13 12 16 16 C 1.46901 * 110.99712 * 172.60767 * 15 14 13 17 17 C 1.50700 * 109.47089 * 59.77068 * 16 15 14 18 18 H 1.07998 * 120.00301 * 355.25633 * 17 16 15 19 19 C 1.37879 * 120.00018 * 175.25926 * 17 16 15 20 20 N 1.31516 * 119.99804 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00276 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47022 * 90.00014 * 21 19 17 23 23 H 1.48498 * 109.47577 * 210.00083 * 21 19 17 24 24 H 1.48506 * 109.47297 * 330.00376 * 21 19 17 25 25 C 1.46902 * 111.26609 * 296.75443 * 15 14 13 26 26 C 1.47086 * 120.87885 * 1.49607 * 12 10 8 27 27 C 1.53167 * 109.03871 * 56.98149 * 5 4 2 28 28 C 1.53098 * 109.16177 * 303.02197 * 27 5 4 29 29 O 1.42901 * 109.47949 * 120.02070 * 2 1 3 30 30 H 1.08999 * 109.47133 * 299.98035 * 1 2 3 31 31 H 1.08998 * 109.46787 * 59.98107 * 1 2 3 32 32 H 1.09003 * 109.46581 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.52401 * 302.30964 * 4 2 1 34 34 H 1.09006 * 109.52134 * 62.43187 * 4 2 1 35 35 H 0.97001 * 119.99888 * 334.99509 * 7 5 4 36 36 H 1.08997 * 109.62502 * 248.52292 * 13 12 10 37 37 H 1.09000 * 109.62490 * 9.09730 * 13 12 10 38 38 H 1.08997 * 109.64928 * 294.08344 * 14 13 12 39 39 H 1.08997 * 109.44239 * 173.95990 * 14 13 12 40 40 H 1.09002 * 109.46762 * 179.76442 * 16 15 14 41 41 H 1.08993 * 109.46982 * 299.76401 * 16 15 14 42 42 H 0.97000 * 120.00381 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.49514 * 303.14598 * 25 15 14 44 44 H 1.08996 * 109.51068 * 183.08188 * 25 15 14 45 45 H 1.08991 * 109.63186 * 350.89487 * 26 12 10 46 46 H 1.09002 * 109.62739 * 111.48275 * 26 12 10 47 47 H 1.09006 * 109.52668 * 62.92318 * 27 5 4 48 48 H 1.09005 * 109.52770 * 183.11428 * 27 5 4 49 49 H 1.08999 * 109.47785 * 297.62189 * 28 27 5 50 50 H 1.08997 * 109.47860 * 177.59201 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0409 -0.7222 -1.2494 5 6 3.5714 -0.7705 -1.2118 6 1 3.9691 0.2439 -1.2405 7 7 4.0665 -1.5238 -2.3668 8 6 5.3086 -1.2959 -2.8377 9 8 6.0166 -0.4666 -2.3054 10 6 5.8133 -2.0639 -4.0163 11 8 5.1550 -2.9747 -4.4742 12 7 6.9998 -1.7451 -4.5704 13 6 7.5028 -2.4704 -5.7469 14 6 7.8980 -1.4395 -6.8161 15 7 8.8392 -0.4737 -6.2335 16 6 9.3777 0.4240 -7.2641 17 6 8.2464 1.1772 -7.9152 18 1 7.2241 0.9515 -7.6500 19 6 8.5164 2.1544 -8.8496 20 7 9.7613 2.4289 -9.1730 21 14 7.1142 3.0875 -9.6572 22 1 6.7946 4.2942 -8.8528 23 1 7.5164 3.4978 -11.0266 24 1 5.9168 2.2125 -9.7342 25 6 8.2138 0.2895 -5.1451 26 6 7.8287 -0.6665 -4.0110 27 6 4.0179 -1.4596 0.0812 28 6 3.4307 -0.7089 1.2793 29 8 2.0066 -0.6740 1.1665 30 1 -0.3633 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6448 -1.7375 -1.2708 34 1 1.7142 -0.1849 -2.1398 35 1 3.5004 -2.1865 -2.7924 36 1 8.3731 -3.0638 -5.4666 37 1 6.7213 -3.1228 -6.1365 38 1 7.0088 -0.9151 -7.1661 39 1 8.3728 -1.9498 -7.6541 40 1 10.0683 1.1314 -6.8049 41 1 9.9049 -0.1620 -8.0168 42 1 9.9514 3.1166 -9.8301 43 1 7.3202 0.7898 -5.5183 44 1 8.9174 1.0331 -4.7709 45 1 7.2629 -0.1256 -3.2526 46 1 8.7298 -1.0898 -3.5672 47 1 3.6618 -2.4898 0.0868 48 1 5.1062 -1.4491 0.1426 49 1 3.8191 0.3095 1.2961 50 1 3.7100 -1.2198 2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602253795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:08 Heat of formation + Delta-G solvation = -94.028004 kcal Electronic energy + Delta-G solvation = -30504.090327 eV Core-core repulsion = 26338.936275 eV Total energy + Delta-G solvation = -4165.154051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08136 -39.93385 -38.62095 -37.59755 -35.85323 -34.37590 -33.23709 -32.33836 -31.91242 -30.68019 -28.46329 -28.10383 -25.96665 -24.92228 -23.88244 -23.16582 -22.54555 -21.74549 -20.98830 -20.52995 -19.31350 -17.64220 -17.14078 -16.75098 -16.50094 -16.28251 -16.08293 -15.70376 -15.31917 -14.95522 -14.83355 -14.54786 -14.41075 -14.27450 -14.01994 -13.84948 -13.58575 -13.37894 -12.99589 -12.75158 -12.72472 -12.45109 -12.32691 -11.87206 -11.86518 -11.55189 -11.45380 -11.42890 -11.16130 -11.05850 -10.85810 -10.83468 -10.70710 -10.59569 -10.29710 -10.07129 -9.94700 -9.70539 -9.53798 -8.96474 -8.56336 -8.47554 -7.26933 -6.07823 -4.17281 1.37730 2.24098 3.17450 3.23686 3.30871 3.32255 3.33717 3.45605 4.13719 4.25084 4.32633 4.36392 4.40926 4.63707 4.72791 4.85092 4.95706 4.99430 5.02323 5.20672 5.22446 5.24430 5.31672 5.39739 5.46043 5.52097 5.53497 5.61370 5.63393 5.72088 5.76095 5.79989 5.87569 5.93266 6.01471 6.34903 6.48445 6.56919 6.60811 6.72145 6.80731 6.91014 7.19624 7.38221 7.46450 7.69022 7.84022 7.94797 7.98997 8.17968 8.23159 8.92479 9.50000 10.97288 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002540 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.521015 B =11020.653140 C =11971.720553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.091 3.909 3 H 0.063 0.937 4 C -0.159 4.159 5 C 0.141 3.859 6 H 0.095 0.905 7 N -0.697 5.697 8 C 0.515 3.485 9 O -0.506 6.506 10 C 0.502 3.498 11 O -0.537 6.537 12 N -0.566 5.566 13 C 0.110 3.890 14 C 0.051 3.949 15 N -0.542 5.542 16 C 0.187 3.813 17 C -0.551 4.551 18 H 0.055 0.945 19 C 0.066 3.934 20 N -0.889 5.889 21 Si 0.889 3.111 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.052 3.948 26 C 0.056 3.944 27 C -0.168 4.168 28 C 0.066 3.934 29 O -0.380 6.380 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.413 0.587 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.044 0.956 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.040 0.960 44 H 0.079 0.921 45 H 0.147 0.853 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.055 0.945 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.551 -7.403 19.392 25.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.081 0.919 4 C -0.198 4.198 5 C 0.037 3.963 6 H 0.113 0.887 7 N -0.350 5.350 8 C 0.297 3.703 9 O -0.382 6.382 10 C 0.284 3.716 11 O -0.415 6.415 12 N -0.298 5.298 13 C -0.012 4.012 14 C -0.079 4.079 15 N -0.267 5.267 16 C 0.062 3.938 17 C -0.590 4.590 18 H 0.073 0.927 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.077 4.077 26 C -0.065 4.065 27 C -0.207 4.207 28 C -0.012 4.012 29 O -0.299 6.299 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.164 0.836 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.073 0.927 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.979 -7.516 19.721 25.314 hybrid contribution -1.231 0.886 -1.528 2.153 sum -15.210 -6.630 18.193 24.622 Atomic orbital electron populations 1.21769 0.92582 1.03150 1.02731 1.22041 0.95419 0.95112 0.84194 0.91910 1.22567 0.94130 1.03201 0.99864 1.21107 0.93819 0.96760 0.84589 0.88667 1.45856 1.15216 1.41879 1.32001 1.20384 0.82371 0.82921 0.84620 1.90378 1.54683 1.34145 1.59006 1.19857 0.82489 0.84699 0.84594 1.90725 1.56956 1.30743 1.63125 1.48150 1.17632 1.34801 1.29218 1.22140 0.99139 0.94899 0.85037 1.22321 0.96444 0.93896 0.95195 1.62529 1.33172 1.18519 1.12446 1.19770 0.94789 0.90521 0.88750 1.21732 0.93591 1.20061 1.23665 0.92659 1.24955 0.95427 0.96795 0.96526 1.69937 1.17916 1.32096 1.32838 0.86649 0.82586 0.80251 0.78870 1.20604 1.21056 1.20006 1.22243 0.98827 0.94896 0.91784 1.23458 0.95970 0.88563 0.98493 1.22638 1.02478 1.00965 0.94593 1.22543 0.80632 0.99926 0.98056 1.87948 1.21133 1.77909 1.42898 0.91576 0.90864 0.91658 0.90069 0.89786 0.75069 0.90627 0.89288 0.93825 0.90120 0.94613 0.95216 0.92746 0.94194 0.90262 0.83637 0.91234 0.90524 0.89891 0.92674 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.57 37.16 0.36 -0.46 16 2 C 0.09 0.63 3.26 -26.69 -0.09 0.54 16 3 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 4 C -0.16 -1.09 4.89 -26.60 -0.13 -1.22 16 5 C 0.14 1.21 2.54 -67.75 -0.17 1.04 16 6 H 0.10 0.92 7.57 -51.93 -0.39 0.53 16 7 N -0.70 -7.12 5.08 -54.06 -0.27 -7.39 16 8 C 0.51 6.87 7.78 -11.59 -0.09 6.78 16 9 O -0.51 -7.36 12.70 5.50 0.07 -7.29 16 10 C 0.50 7.76 7.77 -11.59 -0.09 7.67 16 11 O -0.54 -8.97 15.95 5.50 0.09 -8.88 16 12 N -0.57 -9.18 3.00 -172.69 -0.52 -9.70 16 13 C 0.11 1.77 6.62 -3.37 -0.02 1.75 16 14 C 0.05 0.97 5.18 -3.46 -0.02 0.95 16 15 N -0.54 -11.37 4.83 -235.46 -1.14 -12.51 16 16 C 0.19 4.72 5.11 -4.98 -0.03 4.70 16 17 C -0.55 -14.97 7.76 -34.44 -0.27 -15.24 16 18 H 0.06 1.51 5.88 -52.49 -0.31 1.20 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.05 1.00 5.24 -3.70 -0.02 0.98 16 26 C 0.06 0.91 6.35 -3.60 -0.02 0.88 16 27 C -0.17 -1.33 5.72 -26.59 -0.15 -1.48 16 28 C 0.07 0.47 6.84 37.21 0.25 0.72 16 29 O -0.38 -3.21 10.41 -35.23 -0.37 -3.58 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 3.81 8.10 -40.82 -0.33 3.48 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.39 7.07 -51.93 -0.37 1.02 16 38 H 0.04 0.93 6.63 -51.93 -0.34 0.59 16 39 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 40 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.04 0.86 7.09 -51.93 -0.37 0.49 16 44 H 0.08 1.52 8.06 -51.93 -0.42 1.10 16 45 H 0.15 2.31 3.92 -56.53 -0.22 2.09 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -31.01 390.86 -9.34 -40.35 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.22 Total: 2.57 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -0.58 Total: 9.35 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -1.19 Total: -54.74 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.21 Total: -19.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.01 -9.34 -40.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602253795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.680 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds