Wall clock time and date at job start Tue Mar 31 2020 23:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47945 * 2 1 4 4 C 1.53084 * 109.49340 * 239.97054 * 2 1 3 5 5 C 1.53178 * 109.16485 * 182.40301 * 4 2 1 6 6 H 1.08997 * 109.54550 * 297.11009 * 5 4 2 7 7 N 1.46508 * 109.54334 * 176.93819 * 5 4 2 8 8 C 1.34774 * 120.00000 * 155.00107 * 7 5 4 9 9 O 1.21346 * 119.99974 * 359.97438 * 8 7 5 10 10 C 1.49449 * 119.99809 * 180.02562 * 8 7 5 11 11 O 1.21347 * 120.00394 * 353.34951 * 10 8 7 12 12 N 1.34777 * 119.99931 * 173.35687 * 10 8 7 13 13 C 1.47080 * 120.88342 * 181.22076 * 12 10 8 14 14 C 1.53693 * 108.27966 * 128.75148 * 13 12 10 15 15 N 1.46907 * 109.25503 * 54.08545 * 14 13 12 16 16 C 1.46901 * 110.99712 * 172.60767 * 15 14 13 17 17 C 1.50700 * 109.47089 * 59.77068 * 16 15 14 18 18 H 1.07998 * 120.00301 * 355.25633 * 17 16 15 19 19 C 1.37879 * 120.00018 * 175.25926 * 17 16 15 20 20 N 1.31516 * 119.99804 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00276 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47022 * 90.00014 * 21 19 17 23 23 H 1.48498 * 109.47577 * 210.00083 * 21 19 17 24 24 H 1.48506 * 109.47297 * 330.00376 * 21 19 17 25 25 C 1.46902 * 111.26609 * 296.75443 * 15 14 13 26 26 C 1.47086 * 120.87885 * 1.49607 * 12 10 8 27 27 C 1.53167 * 109.03871 * 56.98149 * 5 4 2 28 28 C 1.53098 * 109.16177 * 303.02197 * 27 5 4 29 29 O 1.42901 * 109.47949 * 120.02070 * 2 1 3 30 30 H 1.08999 * 109.47133 * 299.98035 * 1 2 3 31 31 H 1.08998 * 109.46787 * 59.98107 * 1 2 3 32 32 H 1.09003 * 109.46581 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.52401 * 302.30964 * 4 2 1 34 34 H 1.09006 * 109.52134 * 62.43187 * 4 2 1 35 35 H 0.97001 * 119.99888 * 334.99509 * 7 5 4 36 36 H 1.08997 * 109.62502 * 248.52292 * 13 12 10 37 37 H 1.09000 * 109.62490 * 9.09730 * 13 12 10 38 38 H 1.08997 * 109.64928 * 294.08344 * 14 13 12 39 39 H 1.08997 * 109.44239 * 173.95990 * 14 13 12 40 40 H 1.09002 * 109.46762 * 179.76442 * 16 15 14 41 41 H 1.08993 * 109.46982 * 299.76401 * 16 15 14 42 42 H 0.97000 * 120.00381 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.49514 * 303.14598 * 25 15 14 44 44 H 1.08996 * 109.51068 * 183.08188 * 25 15 14 45 45 H 1.08991 * 109.63186 * 350.89487 * 26 12 10 46 46 H 1.09002 * 109.62739 * 111.48275 * 26 12 10 47 47 H 1.09006 * 109.52668 * 62.92318 * 27 5 4 48 48 H 1.09005 * 109.52770 * 183.11428 * 27 5 4 49 49 H 1.08999 * 109.47785 * 297.62189 * 28 27 5 50 50 H 1.08997 * 109.47860 * 177.59201 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0409 -0.7222 -1.2494 5 6 3.5714 -0.7705 -1.2118 6 1 3.9691 0.2439 -1.2405 7 7 4.0665 -1.5238 -2.3668 8 6 5.3086 -1.2959 -2.8377 9 8 6.0166 -0.4666 -2.3054 10 6 5.8133 -2.0639 -4.0163 11 8 5.1550 -2.9747 -4.4742 12 7 6.9998 -1.7451 -4.5704 13 6 7.5028 -2.4704 -5.7469 14 6 7.8980 -1.4395 -6.8161 15 7 8.8392 -0.4737 -6.2335 16 6 9.3777 0.4240 -7.2641 17 6 8.2464 1.1772 -7.9152 18 1 7.2241 0.9515 -7.6500 19 6 8.5164 2.1544 -8.8496 20 7 9.7613 2.4289 -9.1730 21 14 7.1142 3.0875 -9.6572 22 1 6.7946 4.2942 -8.8528 23 1 7.5164 3.4978 -11.0266 24 1 5.9168 2.2125 -9.7342 25 6 8.2138 0.2895 -5.1451 26 6 7.8287 -0.6665 -4.0110 27 6 4.0179 -1.4596 0.0812 28 6 3.4307 -0.7089 1.2793 29 8 2.0066 -0.6740 1.1665 30 1 -0.3633 0.5135 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6448 -1.7375 -1.2708 34 1 1.7142 -0.1849 -2.1398 35 1 3.5004 -2.1865 -2.7924 36 1 8.3731 -3.0638 -5.4666 37 1 6.7213 -3.1228 -6.1365 38 1 7.0088 -0.9151 -7.1661 39 1 8.3728 -1.9498 -7.6541 40 1 10.0683 1.1314 -6.8049 41 1 9.9049 -0.1620 -8.0168 42 1 9.9514 3.1166 -9.8301 43 1 7.3202 0.7898 -5.5183 44 1 8.9174 1.0331 -4.7709 45 1 7.2629 -0.1256 -3.2526 46 1 8.7298 -1.0898 -3.5672 47 1 3.6618 -2.4898 0.0868 48 1 5.1062 -1.4491 0.1426 49 1 3.8191 0.3095 1.2961 50 1 3.7100 -1.2198 2.2008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602253795.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:07 Heat of formation + Delta-G solvation = -116.869473 kcal Electronic energy + Delta-G solvation = -30505.080807 eV Core-core repulsion = 26338.936275 eV Total energy + Delta-G solvation = -4166.144532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.17430 -40.75833 -39.72220 -39.04051 -36.83994 -35.86174 -34.32456 -33.75997 -32.70395 -32.12737 -30.11090 -28.75173 -27.55732 -26.17934 -24.84605 -24.51523 -23.84217 -22.89438 -21.83470 -21.60509 -20.64220 -18.95162 -18.41341 -18.13677 -17.35425 -17.34334 -17.09937 -16.80098 -16.64932 -16.13655 -16.03258 -15.81959 -15.71081 -15.44804 -15.16105 -15.01790 -14.86018 -14.56125 -14.27655 -13.89507 -13.60306 -13.50969 -13.18942 -13.09094 -12.98141 -12.86994 -12.79514 -12.52974 -12.48838 -12.44479 -12.16381 -12.11104 -12.02878 -11.91225 -11.84465 -11.68318 -11.41926 -10.71047 -10.63780 -10.39040 -10.15553 -9.92035 -9.09214 -8.19401 -6.38711 0.23660 1.16956 1.33351 1.34238 1.44306 2.02217 2.32776 2.33813 2.81374 3.05791 3.15169 3.30621 3.54335 3.70654 3.85898 3.96059 4.01110 4.06492 4.18751 4.22562 4.29812 4.33641 4.42051 4.48695 4.50705 4.58863 4.67102 4.70820 4.75689 4.81730 4.84582 4.94125 4.99812 5.01010 5.06371 5.11889 5.14104 5.18756 5.25471 5.29561 5.32510 5.40691 5.69773 5.88885 5.98441 6.11668 6.23008 6.26711 6.42087 6.60287 6.80701 6.83671 7.32765 8.83185 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002540 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.521015 B =11020.653140 C =11971.720553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.065 0.935 4 C -0.152 4.152 5 C 0.139 3.861 6 H 0.086 0.914 7 N -0.680 5.680 8 C 0.517 3.483 9 O -0.520 6.520 10 C 0.501 3.499 11 O -0.548 6.548 12 N -0.575 5.575 13 C 0.120 3.880 14 C 0.054 3.946 15 N -0.538 5.538 16 C 0.200 3.800 17 C -0.558 4.558 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.923 5.923 21 Si 0.954 3.046 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.272 1.272 25 C 0.054 3.946 26 C 0.072 3.928 27 C -0.162 4.162 28 C 0.066 3.934 29 O -0.394 6.394 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.419 0.581 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.018 0.982 39 H 0.081 0.919 40 H 0.012 0.988 41 H 0.009 0.991 42 H 0.266 0.734 43 H 0.015 0.985 44 H 0.076 0.924 45 H 0.156 0.844 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.397 -7.818 20.459 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.083 0.917 4 C -0.190 4.190 5 C 0.035 3.965 6 H 0.104 0.896 7 N -0.332 5.332 8 C 0.298 3.702 9 O -0.398 6.398 10 C 0.284 3.716 11 O -0.427 6.427 12 N -0.307 5.307 13 C -0.002 4.002 14 C -0.075 4.075 15 N -0.262 5.262 16 C 0.073 3.927 17 C -0.597 4.597 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.562 5.562 21 Si 0.779 3.221 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.196 1.196 25 C -0.075 4.075 26 C -0.049 4.049 27 C -0.201 4.201 28 C -0.011 4.011 29 O -0.313 6.313 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.257 0.743 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.036 0.964 39 H 0.100 0.900 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.095 0.905 45 H 0.172 0.828 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.092 0.908 49 H 0.077 0.923 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.864 -7.952 20.812 27.350 hybrid contribution -0.685 0.981 -1.824 2.182 sum -16.549 -6.971 18.988 26.134 Atomic orbital electron populations 1.21778 0.91587 1.03287 1.03381 1.22172 0.96233 0.95090 0.83677 0.91673 1.22533 0.92510 1.03745 1.00261 1.21266 0.95033 0.96053 0.84115 0.89588 1.45845 1.14029 1.41442 1.31905 1.20016 0.83262 0.82782 0.84126 1.90353 1.55303 1.34838 1.59310 1.20215 0.81857 0.84538 0.84962 1.90715 1.57050 1.31290 1.63694 1.48213 1.18140 1.34938 1.29416 1.22023 1.00113 0.93831 0.84219 1.22324 0.94781 0.93897 0.96547 1.62471 1.34185 1.17933 1.11610 1.19442 0.93988 0.90220 0.89019 1.21933 0.93738 1.20289 1.23756 0.93149 1.25767 0.97835 0.97769 0.97156 1.70046 1.19799 1.32820 1.33534 0.85615 0.79476 0.78929 0.78032 1.19884 1.20382 1.19631 1.22263 0.97454 0.95637 0.92126 1.23351 0.96645 0.88043 0.96879 1.22575 1.01893 1.01097 0.94534 1.22610 0.80161 1.00196 0.98163 1.87938 1.21671 1.78153 1.43580 0.91590 0.89596 0.91759 0.89476 0.89036 0.74297 0.88848 0.88435 0.96354 0.90019 0.97016 0.97289 0.92497 0.96630 0.90524 0.82804 0.89938 0.90347 0.90799 0.92337 0.87074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.57 71.98 0.69 -0.64 16 2 C 0.09 1.03 3.26 30.62 0.10 1.13 16 3 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 4 C -0.15 -1.77 4.89 30.68 0.15 -1.62 16 5 C 0.14 2.15 2.54 45.11 0.11 2.27 16 6 H 0.09 1.55 7.57 -2.39 -0.02 1.53 16 7 N -0.68 -12.73 5.08 -443.31 -2.25 -14.98 16 8 C 0.52 13.03 7.78 87.27 0.68 13.71 16 9 O -0.52 -14.45 12.70 -3.24 -0.04 -14.49 16 10 C 0.50 14.77 7.77 87.27 0.68 15.45 16 11 O -0.55 -17.39 15.95 -3.24 -0.05 -17.44 16 12 N -0.58 -17.91 3.00 -818.62 -2.46 -20.37 16 13 C 0.12 3.72 6.62 86.50 0.57 4.29 16 14 C 0.05 2.06 5.18 86.54 0.45 2.51 16 15 N -0.54 -22.85 4.83 -898.87 -4.34 -27.19 16 16 C 0.20 10.40 5.11 85.56 0.44 10.84 16 17 C -0.56 -30.91 7.76 25.60 0.20 -30.71 16 18 H 0.05 2.80 5.88 -2.91 -0.02 2.78 16 19 C 0.01 0.82 5.46 84.65 0.46 1.28 16 20 N -0.92 -54.47 13.29 21.45 0.28 -54.18 16 21 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 C 0.05 2.11 5.24 86.38 0.45 2.56 16 26 C 0.07 2.24 6.35 86.35 0.55 2.79 16 27 C -0.16 -2.32 5.72 30.68 0.18 -2.15 16 28 C 0.07 0.83 6.84 72.01 0.49 1.32 16 29 O -0.39 -6.00 10.41 -148.98 -1.55 -7.55 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.42 6.91 8.10 -92.71 -0.75 6.16 16 36 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.10 2.89 7.07 -2.39 -0.02 2.87 16 38 H 0.02 0.79 6.63 -2.39 -0.02 0.78 16 39 H 0.08 3.07 8.11 -2.39 -0.02 3.06 16 40 H 0.01 0.66 8.07 -2.39 -0.02 0.64 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.02 0.67 7.09 -2.39 -0.02 0.66 16 44 H 0.08 2.98 8.06 -2.39 -0.02 2.96 16 45 H 0.16 4.71 3.92 -75.10 -0.29 4.41 16 46 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 47 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 48 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -66.10 390.86 -2.27 -68.37 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.09 Total: 18.79 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 6.20 Total: 23.04 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -8.76 Total: -116.72 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.64 Total: -39.48 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.10 -2.27 -68.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602253795.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.495 kcal (2) G-P(sol) polarization free energy of solvation -66.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds