Wall clock time and date at job start Tue Mar 31 2020 23:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.48000 * 2 1 4 4 C 1.53093 * 109.48132 * 120.02502 * 2 1 3 5 5 C 1.53177 * 109.16309 * 177.60171 * 4 2 1 6 6 H 1.08994 * 109.54346 * 183.05972 * 5 4 2 7 7 N 1.46502 * 109.54123 * 62.88483 * 5 4 2 8 8 C 1.34779 * 119.99849 * 154.99725 * 7 5 4 9 9 O 1.21345 * 119.99777 * 0.02562 * 8 7 5 10 10 C 1.49451 * 119.99917 * 180.02562 * 8 7 5 11 11 O 1.21354 * 119.99778 * 6.63387 * 10 8 7 12 12 N 1.34772 * 120.00037 * 186.35336 * 10 8 7 13 13 C 1.47078 * 120.88199 * 358.41551 * 12 10 8 14 14 C 1.53703 * 108.27820 * 128.75043 * 13 12 10 15 15 N 1.46895 * 109.25376 * 54.08542 * 14 13 12 16 16 C 1.46898 * 110.99813 * 172.60887 * 15 14 13 17 17 C 1.50703 * 109.47081 * 59.56594 * 16 15 14 18 18 H 1.07997 * 120.00071 * 355.17984 * 17 16 15 19 19 C 1.37885 * 119.99721 * 175.18278 * 17 16 15 20 20 N 1.31513 * 119.99736 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00135 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47049 * 90.00293 * 21 19 17 23 23 H 1.48496 * 109.47112 * 210.00049 * 21 19 17 24 24 H 1.48504 * 109.47267 * 330.00368 * 21 19 17 25 25 C 1.46900 * 111.26959 * 296.75392 * 15 14 13 26 26 C 1.47078 * 120.88484 * 178.69202 * 12 10 8 27 27 C 1.53179 * 109.03860 * 303.02141 * 5 4 2 28 28 C 1.53097 * 109.16359 * 56.97856 * 27 5 4 29 29 O 1.42907 * 109.41381 * 302.39105 * 28 27 5 30 30 H 1.08992 * 109.47254 * 299.97549 * 1 2 3 31 31 H 1.09000 * 109.46834 * 59.98031 * 1 2 3 32 32 H 1.09004 * 109.46996 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.52090 * 57.69950 * 4 2 1 34 34 H 1.09001 * 109.52002 * 297.50873 * 4 2 1 35 35 H 0.97004 * 120.00366 * 335.00432 * 7 5 4 36 36 H 1.08997 * 109.63279 * 248.52291 * 13 12 10 37 37 H 1.09009 * 109.62606 * 9.10303 * 13 12 10 38 38 H 1.08999 * 109.64671 * 294.08080 * 14 13 12 39 39 H 1.08996 * 109.44353 * 173.96621 * 14 13 12 40 40 H 1.09004 * 109.47279 * 179.56322 * 16 15 14 41 41 H 1.08995 * 109.47568 * 299.56568 * 16 15 14 42 42 H 0.96997 * 120.00131 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.49208 * 303.15007 * 25 15 14 44 44 H 1.08995 * 109.51474 * 183.07832 * 25 15 14 45 45 H 1.09003 * 109.62442 * 350.89809 * 26 12 10 46 46 H 1.08992 * 109.63208 * 111.28269 * 26 12 10 47 47 H 1.08995 * 109.52116 * 176.88560 * 27 5 4 48 48 H 1.08998 * 109.51871 * 297.07451 * 27 5 4 49 49 H 1.08991 * 109.47847 * 182.40907 * 28 27 5 50 50 H 1.08997 * 109.49073 * 62.38002 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5712 -0.7706 1.2123 6 1 3.9393 -1.3309 2.0717 7 7 4.1056 0.5930 1.2508 8 6 5.3475 0.8168 1.7242 9 8 6.0231 -0.1111 2.1180 10 6 5.8925 2.2078 1.7640 11 8 5.1776 3.1478 1.4846 12 7 7.1763 2.4188 2.1157 13 6 8.0485 1.2977 2.4974 14 6 9.3420 1.3906 1.6724 15 7 9.9331 2.7240 1.8470 16 6 11.2586 2.7986 1.2181 17 6 11.1329 2.5053 -0.2547 18 1 10.1796 2.2093 -0.6670 19 6 12.2352 2.6147 -1.0759 20 7 12.1256 2.3582 -2.3611 21 14 13.8839 3.1272 -0.3629 22 1 14.6340 1.9199 0.0673 23 1 14.6655 3.8536 -1.3957 24 1 13.6630 4.0155 0.8065 25 6 9.0447 3.7728 1.3288 26 6 7.7408 3.7768 2.1338 27 6 4.0179 -1.4597 -0.0807 28 6 3.4310 -0.7090 -1.2790 29 8 2.0068 -0.6742 -1.1664 30 1 -0.3633 0.5134 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6445 -1.7375 1.2709 34 1 1.7147 -0.1843 2.1399 35 1 3.5657 1.3347 0.9357 36 1 8.2829 1.3614 3.5600 37 1 7.5452 0.3540 2.2865 38 1 9.1169 1.2277 0.6184 39 1 10.0463 0.6327 2.0153 40 1 11.6702 3.7985 1.3556 41 1 11.9213 2.0663 1.6791 42 1 12.9009 2.4356 -2.9389 43 1 8.8238 3.5767 0.2795 44 1 9.5331 4.7427 1.4226 45 1 7.0340 4.4731 1.6824 46 1 7.9430 4.0756 3.1623 47 1 5.1061 -1.4492 -0.1418 48 1 3.6618 -2.4898 -0.0862 49 1 3.7104 -1.2199 -2.2003 50 1 3.8193 0.3093 -1.2959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602253797.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:15 Heat of formation + Delta-G solvation = -87.531541 kcal Electronic energy + Delta-G solvation = -30973.213918 eV Core-core repulsion = 26808.341575 eV Total energy + Delta-G solvation = -4164.872344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18387 -39.96820 -38.54084 -37.65002 -35.68756 -34.41411 -33.17678 -32.31380 -31.81652 -30.73010 -28.80264 -28.14919 -26.17304 -24.88583 -24.08077 -23.18398 -22.61677 -21.89931 -20.82095 -19.87292 -19.34948 -17.73046 -17.02811 -16.79575 -16.65917 -16.35614 -16.04113 -15.98867 -15.38491 -14.92891 -14.59583 -14.53846 -14.40465 -14.31852 -13.96577 -13.77204 -13.40540 -13.21589 -13.01534 -12.75496 -12.60665 -12.46809 -12.39228 -12.31921 -12.21979 -11.62435 -11.52311 -11.37271 -11.34059 -11.17065 -10.84672 -10.67156 -10.64344 -10.47590 -10.35342 -10.00962 -9.86418 -9.58898 -9.46561 -8.99975 -8.65145 -8.58724 -7.31170 -6.15411 -4.16235 1.37893 2.25536 3.17872 3.24239 3.32057 3.34747 3.40987 3.46290 4.17676 4.27415 4.33128 4.34834 4.44990 4.63740 4.72954 4.84607 4.92604 5.10061 5.15888 5.17302 5.25240 5.32429 5.34954 5.43963 5.46700 5.48547 5.58817 5.62914 5.68266 5.75117 5.76282 5.79823 5.87175 5.90316 5.98063 6.29523 6.45678 6.52105 6.60425 6.70674 6.85811 6.89895 6.90774 7.00142 7.35108 7.49216 7.68441 7.92815 7.97621 7.98393 8.38400 8.86076 9.46767 10.97458 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.002633 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.409658 B =10632.831344 C =11314.774448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.082 3.918 3 H 0.058 0.942 4 C -0.157 4.157 5 C 0.141 3.859 6 H 0.100 0.900 7 N -0.699 5.699 8 C 0.515 3.485 9 O -0.504 6.504 10 C 0.502 3.498 11 O -0.536 6.536 12 N -0.566 5.566 13 C 0.056 3.944 14 C 0.049 3.951 15 N -0.535 5.535 16 C 0.153 3.847 17 C -0.553 4.553 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.049 3.951 26 C 0.111 3.889 27 C -0.168 4.168 28 C 0.060 3.940 29 O -0.377 6.377 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.149 0.851 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.075 0.925 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.098 0.902 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.167 -5.637 8.481 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.024 3.976 3 H 0.076 0.924 4 C -0.195 4.195 5 C 0.037 3.963 6 H 0.118 0.882 7 N -0.353 5.353 8 C 0.297 3.703 9 O -0.381 6.381 10 C 0.284 3.716 11 O -0.415 6.415 12 N -0.298 5.298 13 C -0.065 4.065 14 C -0.080 4.080 15 N -0.259 5.259 16 C 0.026 3.974 17 C -0.592 4.592 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.707 3.293 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.188 1.188 25 C -0.080 4.080 26 C -0.011 4.011 27 C -0.207 4.207 28 C -0.017 4.017 29 O -0.297 6.297 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.108 0.892 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.116 0.884 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.007 -5.810 8.825 23.515 hybrid contribution 1.108 0.608 -0.691 1.440 sum -19.899 -5.203 8.135 22.118 Atomic orbital electron populations 1.21762 0.92669 1.03057 1.02692 1.22098 0.95483 0.94980 0.85069 0.92448 1.22541 0.94084 1.03511 0.99413 1.21132 0.93322 0.82416 0.99465 0.88228 1.45966 1.15595 1.10456 1.63298 1.20354 0.82261 0.89792 0.77846 1.90373 1.55478 1.45309 1.46900 1.19870 0.83218 0.88937 0.79557 1.90727 1.57746 1.43524 1.49478 1.48118 1.09277 1.10066 1.62380 1.23555 0.91507 0.91927 0.99469 1.22373 0.94365 0.92373 0.98855 1.62449 1.04125 1.02439 1.56911 1.20225 0.86447 0.97197 0.93535 1.21678 0.97842 1.47629 0.92055 0.90866 1.24984 0.99050 0.94368 0.94641 1.69926 1.30700 1.48863 1.04107 0.86786 0.83993 0.79345 0.79206 1.20145 1.21297 1.18772 1.22254 0.91668 0.96754 0.97330 1.22010 0.95391 0.82244 1.01430 1.22596 1.02699 1.00556 0.94824 1.22584 0.80519 1.00104 0.98478 1.87956 1.21209 1.77804 1.42704 0.90967 0.91619 0.91668 0.89008 0.89880 0.75266 0.91250 0.83481 0.93441 0.90270 0.95044 0.95535 0.92623 0.93297 0.90142 0.89176 0.90694 0.89710 0.89636 0.88361 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.57 37.16 0.36 -0.52 16 2 C 0.08 0.62 3.09 -26.68 -0.08 0.54 16 3 H 0.06 0.44 6.71 -51.93 -0.35 0.09 16 4 C -0.16 -1.04 5.07 -26.59 -0.13 -1.17 16 5 C 0.14 1.21 2.82 -67.75 -0.19 1.02 16 6 H 0.10 0.90 7.58 -51.93 -0.39 0.51 16 7 N -0.70 -7.23 4.39 -54.06 -0.24 -7.46 16 8 C 0.52 6.88 7.78 -11.58 -0.09 6.79 16 9 O -0.50 -7.33 12.69 5.50 0.07 -7.26 16 10 C 0.50 7.76 7.77 -11.59 -0.09 7.67 16 11 O -0.54 -8.95 15.95 5.49 0.09 -8.86 16 12 N -0.57 -9.09 3.00 -172.68 -0.52 -9.61 16 13 C 0.06 0.90 6.39 -3.36 -0.02 0.87 16 14 C 0.05 0.94 5.17 -3.46 -0.02 0.92 16 15 N -0.54 -10.82 4.83 -235.47 -1.14 -11.95 16 16 C 0.15 3.57 4.20 -4.98 -0.02 3.55 16 17 C -0.55 -15.14 8.32 -34.44 -0.29 -15.43 16 18 H 0.07 2.20 6.12 -52.49 -0.32 1.88 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 21 Si 0.88 21.09 27.57 -169.99 -4.69 16.41 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.26 -6.04 6.41 56.52 0.36 -5.68 16 25 C 0.05 0.92 5.24 -3.70 -0.02 0.90 16 26 C 0.11 1.76 6.59 -3.60 -0.02 1.74 16 27 C -0.17 -1.50 5.81 -26.59 -0.15 -1.65 16 28 C 0.06 0.56 6.68 37.21 0.25 0.81 16 29 O -0.38 -3.69 10.41 -35.23 -0.37 -4.05 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.41 3.99 6.56 -40.82 -0.27 3.72 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.15 2.32 3.91 -56.55 -0.22 2.10 16 38 H 0.05 1.04 6.62 -51.93 -0.34 0.69 16 39 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 40 H 0.03 0.74 6.79 -51.93 -0.35 0.39 16 41 H 0.03 0.62 7.81 -51.93 -0.41 0.22 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.05 1.06 7.10 -51.93 -0.37 0.69 16 44 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 45 H 0.09 1.39 7.07 -51.93 -0.37 1.02 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.05 0.53 7.75 -51.93 -0.40 0.13 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -31.67 383.30 -8.90 -40.56 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.03 Total: 4.82 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -0.63 Total: 7.99 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -1.12 Total: -55.38 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.21 Total: -20.17 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.69 Total: 16.41 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.67 -8.90 -40.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602253797.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.968 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds