Wall clock time and date at job start Tue Mar 31 2020 23:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.48000 * 2 1 4 4 C 1.53093 * 109.48132 * 120.02502 * 2 1 3 5 5 C 1.53177 * 109.16309 * 177.60171 * 4 2 1 6 6 H 1.08994 * 109.54346 * 183.05972 * 5 4 2 7 7 N 1.46502 * 109.54123 * 62.88483 * 5 4 2 8 8 C 1.34779 * 119.99849 * 154.99725 * 7 5 4 9 9 O 1.21345 * 119.99777 * 0.02562 * 8 7 5 10 10 C 1.49451 * 119.99917 * 180.02562 * 8 7 5 11 11 O 1.21354 * 119.99778 * 6.63387 * 10 8 7 12 12 N 1.34772 * 120.00037 * 186.35336 * 10 8 7 13 13 C 1.47078 * 120.88199 * 358.41551 * 12 10 8 14 14 C 1.53703 * 108.27820 * 128.75043 * 13 12 10 15 15 N 1.46895 * 109.25376 * 54.08542 * 14 13 12 16 16 C 1.46898 * 110.99813 * 172.60887 * 15 14 13 17 17 C 1.50703 * 109.47081 * 59.56594 * 16 15 14 18 18 H 1.07997 * 120.00071 * 355.17984 * 17 16 15 19 19 C 1.37885 * 119.99721 * 175.18278 * 17 16 15 20 20 N 1.31513 * 119.99736 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00135 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47049 * 90.00293 * 21 19 17 23 23 H 1.48496 * 109.47112 * 210.00049 * 21 19 17 24 24 H 1.48504 * 109.47267 * 330.00368 * 21 19 17 25 25 C 1.46900 * 111.26959 * 296.75392 * 15 14 13 26 26 C 1.47078 * 120.88484 * 178.69202 * 12 10 8 27 27 C 1.53179 * 109.03860 * 303.02141 * 5 4 2 28 28 C 1.53097 * 109.16359 * 56.97856 * 27 5 4 29 29 O 1.42907 * 109.41381 * 302.39105 * 28 27 5 30 30 H 1.08992 * 109.47254 * 299.97549 * 1 2 3 31 31 H 1.09000 * 109.46834 * 59.98031 * 1 2 3 32 32 H 1.09004 * 109.46996 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.52090 * 57.69950 * 4 2 1 34 34 H 1.09001 * 109.52002 * 297.50873 * 4 2 1 35 35 H 0.97004 * 120.00366 * 335.00432 * 7 5 4 36 36 H 1.08997 * 109.63279 * 248.52291 * 13 12 10 37 37 H 1.09009 * 109.62606 * 9.10303 * 13 12 10 38 38 H 1.08999 * 109.64671 * 294.08080 * 14 13 12 39 39 H 1.08996 * 109.44353 * 173.96621 * 14 13 12 40 40 H 1.09004 * 109.47279 * 179.56322 * 16 15 14 41 41 H 1.08995 * 109.47568 * 299.56568 * 16 15 14 42 42 H 0.96997 * 120.00131 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.49208 * 303.15007 * 25 15 14 44 44 H 1.08995 * 109.51474 * 183.07832 * 25 15 14 45 45 H 1.09003 * 109.62442 * 350.89809 * 26 12 10 46 46 H 1.08992 * 109.63208 * 111.28269 * 26 12 10 47 47 H 1.08995 * 109.52116 * 176.88560 * 27 5 4 48 48 H 1.08998 * 109.51871 * 297.07451 * 27 5 4 49 49 H 1.08991 * 109.47847 * 182.40907 * 28 27 5 50 50 H 1.08997 * 109.49073 * 62.38002 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5712 -0.7706 1.2123 6 1 3.9393 -1.3309 2.0717 7 7 4.1056 0.5930 1.2508 8 6 5.3475 0.8168 1.7242 9 8 6.0231 -0.1111 2.1180 10 6 5.8925 2.2078 1.7640 11 8 5.1776 3.1478 1.4846 12 7 7.1763 2.4188 2.1157 13 6 8.0485 1.2977 2.4974 14 6 9.3420 1.3906 1.6724 15 7 9.9331 2.7240 1.8470 16 6 11.2586 2.7986 1.2181 17 6 11.1329 2.5053 -0.2547 18 1 10.1796 2.2093 -0.6670 19 6 12.2352 2.6147 -1.0759 20 7 12.1256 2.3582 -2.3611 21 14 13.8839 3.1272 -0.3629 22 1 14.6340 1.9199 0.0673 23 1 14.6655 3.8536 -1.3957 24 1 13.6630 4.0155 0.8065 25 6 9.0447 3.7728 1.3288 26 6 7.7408 3.7768 2.1338 27 6 4.0179 -1.4597 -0.0807 28 6 3.4310 -0.7090 -1.2790 29 8 2.0068 -0.6742 -1.1664 30 1 -0.3633 0.5134 0.8901 31 1 -0.3633 0.5141 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6445 -1.7375 1.2709 34 1 1.7147 -0.1843 2.1399 35 1 3.5657 1.3347 0.9357 36 1 8.2829 1.3614 3.5600 37 1 7.5452 0.3540 2.2865 38 1 9.1169 1.2277 0.6184 39 1 10.0463 0.6327 2.0153 40 1 11.6702 3.7985 1.3556 41 1 11.9213 2.0663 1.6791 42 1 12.9009 2.4356 -2.9389 43 1 8.8238 3.5767 0.2795 44 1 9.5331 4.7427 1.4226 45 1 7.0340 4.4731 1.6824 46 1 7.9430 4.0756 3.1623 47 1 5.1061 -1.4492 -0.1418 48 1 3.6618 -2.4898 -0.0862 49 1 3.7104 -1.2199 -2.2003 50 1 3.8193 0.3093 -1.2959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602253797.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:14 Heat of formation + Delta-G solvation = -111.744198 kcal Electronic energy + Delta-G solvation = -30974.263858 eV Core-core repulsion = 26808.341575 eV Total energy + Delta-G solvation = -4165.922283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.25513 -40.91208 -39.67298 -39.07350 -36.71847 -35.82763 -34.35622 -33.78280 -32.67513 -32.15992 -30.53267 -28.80201 -27.72694 -26.02683 -25.08367 -24.60187 -23.61191 -23.17356 -22.15194 -20.79056 -20.66669 -19.21058 -18.62482 -18.15468 -17.34557 -17.23890 -17.12991 -16.93285 -16.49576 -16.40257 -16.12425 -15.93761 -15.84766 -15.31717 -15.26348 -14.89793 -14.65999 -14.44220 -14.13773 -13.97699 -13.81374 -13.59538 -13.38441 -13.22136 -13.06304 -12.94283 -12.86626 -12.77758 -12.39210 -12.21483 -12.14880 -12.13719 -12.05357 -11.98659 -11.76691 -11.68323 -11.35552 -10.81962 -10.63730 -10.29275 -10.23521 -9.93158 -9.08105 -8.33943 -6.40303 0.22229 1.16934 1.35857 1.37092 1.48687 2.01209 2.32278 2.32915 2.77278 3.01227 3.13612 3.23825 3.57791 3.67935 3.81282 3.91768 3.94022 4.04172 4.12422 4.20673 4.26138 4.31846 4.44465 4.48899 4.52837 4.60378 4.65513 4.70609 4.73035 4.79504 4.83686 4.93448 4.95213 5.00729 5.02794 5.03562 5.04320 5.12230 5.15945 5.20655 5.31910 5.40161 5.46328 5.84751 6.00158 6.15284 6.22715 6.28053 6.29524 6.57591 6.66208 6.81304 7.26961 8.82547 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.002633 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.409658 B =10632.831344 C =11314.774448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.053 0.947 4 C -0.147 4.147 5 C 0.138 3.862 6 H 0.101 0.899 7 N -0.684 5.684 8 C 0.517 3.483 9 O -0.517 6.517 10 C 0.499 3.501 11 O -0.550 6.550 12 N -0.576 5.576 13 C 0.071 3.929 14 C 0.052 3.948 15 N -0.525 5.525 16 C 0.158 3.842 17 C -0.552 4.552 18 H 0.028 0.972 19 C 0.009 3.991 20 N -0.950 5.950 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.241 1.241 25 C 0.052 3.948 26 C 0.120 3.880 27 C -0.164 4.164 28 C 0.060 3.940 29 O -0.391 6.391 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.414 0.586 36 H 0.090 0.910 37 H 0.153 0.847 38 H 0.007 0.993 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.035 0.965 42 H 0.266 0.734 43 H 0.007 0.993 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.065 0.935 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.792 -5.595 11.095 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.071 0.929 4 C -0.185 4.185 5 C 0.035 3.965 6 H 0.119 0.881 7 N -0.337 5.337 8 C 0.298 3.702 9 O -0.395 6.395 10 C 0.282 3.718 11 O -0.429 6.429 12 N -0.307 5.307 13 C -0.050 4.050 14 C -0.077 4.077 15 N -0.249 5.249 16 C 0.031 3.969 17 C -0.591 4.591 18 H 0.046 0.954 19 C -0.189 4.189 20 N -0.590 5.590 21 Si 0.776 3.224 22 H -0.191 1.191 23 H -0.213 1.213 24 H -0.164 1.164 25 C -0.078 4.078 26 C -0.002 4.002 27 C -0.203 4.203 28 C -0.017 4.017 29 O -0.310 6.310 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.252 0.748 36 H 0.108 0.892 37 H 0.170 0.830 38 H 0.025 0.975 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.026 0.974 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.084 0.916 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.684 -5.771 11.454 25.193 hybrid contribution 1.164 0.570 -1.596 2.056 sum -20.521 -5.200 9.858 23.352 Atomic orbital electron populations 1.21774 0.91307 1.03485 1.03321 1.22313 0.96581 0.94741 0.84831 0.92873 1.22512 0.92026 1.04496 0.99460 1.21325 0.94842 0.81099 0.99220 0.88076 1.45971 1.14427 1.11574 1.61703 1.20005 0.83087 0.88629 0.78448 1.90349 1.55983 1.45140 1.48073 1.20257 0.82966 0.89833 0.78755 1.90713 1.58065 1.44261 1.49855 1.48214 1.09712 1.10132 1.62685 1.23466 0.89591 0.92227 0.99709 1.22384 0.96232 0.91947 0.97158 1.62497 1.03341 1.03286 1.55729 1.20120 0.88511 0.97478 0.90813 1.21896 0.96022 1.46699 0.94433 0.95381 1.25983 1.03609 0.94456 0.94833 1.70091 1.32098 1.50846 1.05939 0.85628 0.78314 0.79531 0.78947 1.19102 1.21262 1.16398 1.22272 0.93225 0.96721 0.95544 1.21935 0.93577 0.82510 1.02170 1.22553 1.01434 1.01454 0.94839 1.22549 0.80723 0.99432 0.98965 1.87947 1.20992 1.78115 1.43959 0.89128 0.92251 0.91317 0.87600 0.88246 0.74780 0.89199 0.83042 0.97497 0.89761 0.94380 0.94736 0.92518 0.97438 0.89113 0.88781 0.88155 0.91624 0.88110 0.88054 0.94279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.57 71.98 0.69 -0.75 16 2 C 0.07 1.00 3.09 30.63 0.09 1.09 16 3 H 0.05 0.77 6.71 -2.39 -0.02 0.75 16 4 C -0.15 -1.60 5.07 30.68 0.16 -1.44 16 5 C 0.14 2.19 2.82 45.11 0.13 2.32 16 6 H 0.10 1.65 7.58 -2.39 -0.02 1.63 16 7 N -0.68 -13.56 4.39 -443.30 -1.95 -15.50 16 8 C 0.52 13.51 7.78 87.27 0.68 14.19 16 9 O -0.52 -14.69 12.69 -3.23 -0.04 -14.74 16 10 C 0.50 15.19 7.77 87.27 0.68 15.86 16 11 O -0.55 -18.03 15.95 -3.26 -0.05 -18.08 16 12 N -0.58 -18.08 3.00 -818.61 -2.46 -20.54 16 13 C 0.07 2.19 6.39 86.51 0.55 2.74 16 14 C 0.05 2.00 5.17 86.54 0.45 2.44 16 15 N -0.53 -21.00 4.83 -898.88 -4.34 -25.34 16 16 C 0.16 7.31 4.20 85.56 0.36 7.67 16 17 C -0.55 -31.15 8.32 25.60 0.21 -30.93 16 18 H 0.03 1.80 6.12 -2.91 -0.02 1.78 16 19 C 0.01 0.52 5.47 84.66 0.46 0.99 16 20 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 21 Si 0.95 43.26 27.57 68.60 1.89 45.16 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.24 -9.99 6.41 99.48 0.64 -9.35 16 25 C 0.05 1.95 5.24 86.38 0.45 2.40 16 26 C 0.12 3.66 6.59 86.35 0.57 4.23 16 27 C -0.16 -2.84 5.81 30.69 0.18 -2.67 16 28 C 0.06 1.12 6.68 72.01 0.48 1.60 16 29 O -0.39 -7.32 10.41 -148.98 -1.55 -8.88 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.41 7.71 6.56 -92.71 -0.61 7.11 16 36 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.15 4.68 3.91 -75.65 -0.30 4.39 16 38 H 0.01 0.31 6.62 -2.39 -0.02 0.30 16 39 H 0.08 3.11 8.11 -2.39 -0.02 3.09 16 40 H 0.04 1.72 6.79 -2.38 -0.02 1.71 16 41 H 0.03 1.56 7.81 -2.39 -0.02 1.54 16 42 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.01 0.33 7.10 -2.39 -0.02 0.32 16 44 H 0.09 3.20 8.06 -2.39 -0.02 3.18 16 45 H 0.09 2.82 7.07 -2.39 -0.02 2.80 16 46 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.04 0.82 7.75 -2.39 -0.02 0.80 16 Total: -1.00 -70.38 383.30 -2.07 -72.44 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.01 Total: 24.82 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 6.14 Total: 19.75 kcal Atomic # 7 Polarization: -112.03 SS G_CDS: -8.44 Total: -120.48 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.64 Total: -41.69 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.89 Total: 45.16 kcal Total: -70.38 -2.07 -72.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602253797.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.301 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds