Wall clock time and date at job start Tue Mar 31 2020 23:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.26990 * 2 1 4 4 C 1.54948 * 110.30814 * 122.08458 * 2 1 3 5 5 C 1.55309 * 100.93933 * 155.36165 * 4 2 1 6 6 C 1.54380 * 102.24991 * 325.87017 * 5 4 2 7 7 H 1.09007 * 109.83048 * 261.74554 * 6 5 4 8 8 C 1.53005 * 109.82649 * 140.87112 * 6 5 4 9 9 N 1.46505 * 109.46879 * 180.17982 * 8 6 5 10 10 C 1.34779 * 119.99784 * 179.97438 * 9 8 6 11 11 O 1.21344 * 120.00248 * 0.02562 * 10 9 8 12 12 C 1.49444 * 119.99655 * 180.02562 * 10 9 8 13 13 O 1.21347 * 120.00552 * 6.62612 * 12 10 9 14 14 N 1.34782 * 120.00088 * 186.35870 * 12 10 9 15 15 C 1.47078 * 120.87752 * 358.40356 * 14 12 10 16 16 C 1.53702 * 108.27683 * 128.75501 * 15 14 12 17 17 N 1.46898 * 109.25134 * 54.08343 * 16 15 14 18 18 C 1.46900 * 110.99850 * 172.60420 * 17 16 15 19 19 C 1.50701 * 109.47037 * 59.56825 * 18 17 16 20 20 H 1.08004 * 119.99565 * 355.11147 * 19 18 17 21 21 C 1.37880 * 120.00407 * 175.10557 * 19 18 17 22 22 N 1.31506 * 119.99450 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99992 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46790 * 60.00696 * 23 21 19 25 25 H 1.48502 * 109.46921 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47638 * 300.00118 * 23 21 19 27 27 C 1.46893 * 111.27086 * 296.75554 * 17 16 15 28 28 C 1.47073 * 120.88407 * 178.68386 * 14 12 10 29 29 O 1.43233 * 107.66996 * 21.30907 * 6 5 4 30 30 H 1.09000 * 109.47078 * 297.91005 * 1 2 3 31 31 H 1.09000 * 109.46660 * 57.91184 * 1 2 3 32 32 H 1.08995 * 109.46835 * 177.91216 * 1 2 3 33 33 H 1.09000 * 111.12380 * 37.44859 * 4 2 1 34 34 H 1.08994 * 111.16231 * 273.29902 * 4 2 1 35 35 H 1.08993 * 110.84513 * 207.67759 * 5 4 2 36 36 H 1.09004 * 110.84518 * 84.05569 * 5 4 2 37 37 H 1.09000 * 109.47059 * 60.18702 * 8 6 5 38 38 H 1.08992 * 109.47452 * 300.18081 * 8 6 5 39 39 H 0.96998 * 119.99877 * 0.02562 * 9 8 6 40 40 H 1.09000 * 109.63467 * 248.52600 * 15 14 12 41 41 H 1.09006 * 109.63139 * 9.10984 * 15 14 12 42 42 H 1.08997 * 109.64806 * 294.08121 * 16 15 14 43 43 H 1.09001 * 109.44151 * 173.96204 * 16 15 14 44 44 H 1.09002 * 109.47385 * 179.56464 * 18 17 16 45 45 H 1.08999 * 109.47398 * 299.57412 * 18 17 16 46 46 H 0.97005 * 119.99634 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.49688 * 303.14374 * 27 17 16 48 48 H 1.09004 * 109.51403 * 183.08047 * 27 17 16 49 49 H 1.08998 * 109.63101 * 350.89658 * 28 14 12 50 50 H 1.09004 * 109.62615 * 111.47754 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7719 1.2312 5 6 3.4700 -1.2018 0.7202 6 6 3.2113 -1.4426 -0.7826 7 1 3.0642 -2.5069 -0.9666 8 6 4.3992 -0.9339 -1.6018 9 7 4.1437 -1.1622 -3.0262 10 6 5.0591 -0.7908 -3.9430 11 8 6.0951 -0.2677 -3.5887 12 6 4.7982 -1.0233 -5.3961 13 8 3.7161 -1.4344 -5.7601 14 7 5.7630 -0.7711 -6.3028 15 6 7.0676 -0.2340 -5.8872 16 6 8.1685 -1.1178 -6.4949 17 7 7.9693 -1.2096 -7.9474 18 6 9.0959 -1.8988 -8.5907 19 6 9.2247 -3.2889 -8.0231 20 1 8.5900 -3.5995 -7.2063 21 6 10.1526 -4.1641 -8.5465 22 7 10.9256 -3.7856 -9.5408 23 14 10.3126 -5.8869 -7.8424 24 1 9.0204 -6.6037 -7.9897 25 1 11.3742 -6.6239 -8.5739 26 1 10.6708 -5.8025 -6.4038 27 6 6.6962 -1.8673 -8.2702 28 6 5.5371 -1.0201 -7.7346 29 8 2.0282 -0.7193 -1.1415 30 1 -0.3633 0.4810 0.9081 31 1 -0.3632 0.5459 -0.8707 32 1 -0.3633 -1.0270 -0.0374 33 1 1.4472 -1.6402 1.4523 34 1 2.1496 -0.1189 2.1001 35 1 3.7967 -2.1193 1.2095 36 1 4.1975 -0.4031 0.8654 37 1 5.3013 -1.4685 -1.3043 38 1 4.5335 0.1329 -1.4232 39 1 3.3154 -1.5800 -3.3095 40 1 7.1743 0.7890 -6.2481 41 1 7.1412 -0.2511 -4.7998 42 1 8.1210 -2.1151 -6.0575 43 1 9.1435 -0.6762 -6.2886 44 1 8.9192 -1.9598 -9.6646 45 1 10.0154 -1.3439 -8.4047 46 1 11.5787 -4.4013 -9.9088 47 1 6.6691 -2.8542 -7.8082 48 1 6.6029 -1.9693 -9.3514 49 1 4.5982 -1.5571 -7.8692 50 1 5.4995 -0.0712 -8.2697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602277921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:34 Heat of formation + Delta-G solvation = -91.610804 kcal Electronic energy + Delta-G solvation = -30086.501122 eV Core-core repulsion = 25921.451889 eV Total energy + Delta-G solvation = -4165.049234 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88660 -40.10164 -38.62890 -37.52194 -35.50232 -34.23738 -32.77696 -32.32051 -32.15770 -30.62845 -28.73249 -28.15046 -25.82686 -24.83090 -23.56365 -22.94880 -22.15207 -21.84182 -21.11324 -20.50111 -19.26931 -17.67411 -17.44939 -16.96246 -16.39737 -16.28303 -15.94268 -15.75894 -15.16573 -14.77854 -14.63015 -14.54294 -14.36272 -14.11733 -13.87042 -13.65292 -13.47326 -13.39667 -13.16953 -12.68772 -12.63981 -12.47368 -12.28470 -12.22118 -11.82645 -11.68621 -11.41879 -11.38661 -11.26910 -11.11434 -11.00871 -10.78030 -10.63676 -10.57279 -10.22250 -9.98912 -9.93168 -9.68725 -9.43490 -8.89504 -8.49009 -8.44355 -7.22424 -6.04646 -4.13943 1.48521 2.34908 3.19506 3.27489 3.29573 3.32392 3.35033 3.61850 3.94150 4.15781 4.24242 4.38536 4.39093 4.60102 4.65468 4.80926 4.88070 5.01791 5.03039 5.12318 5.19755 5.23953 5.25503 5.33364 5.43743 5.46510 5.56221 5.58064 5.67755 5.69362 5.74303 5.84402 5.88260 5.99203 6.07645 6.40635 6.52775 6.60370 6.64289 6.66351 6.76834 7.02134 7.23774 7.46389 7.49686 7.79666 7.87345 7.99759 8.08076 8.21960 8.27188 8.95651 9.53037 11.00355 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002258 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.321942 B =12395.003675 C =13140.871306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 H 0.072 0.928 4 C -0.151 4.151 5 C -0.148 4.148 6 C 0.068 3.932 7 H 0.090 0.910 8 C 0.108 3.892 9 N -0.694 5.694 10 C 0.512 3.488 11 O -0.510 6.510 12 C 0.503 3.497 13 O -0.535 6.535 14 N -0.567 5.567 15 C 0.056 3.944 16 C 0.051 3.949 17 N -0.542 5.542 18 C 0.187 3.813 19 C -0.551 4.551 20 H 0.055 0.945 21 C 0.065 3.935 22 N -0.890 5.890 23 Si 0.889 3.111 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.051 3.949 28 C 0.111 3.889 29 O -0.370 6.370 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.416 0.584 40 H 0.069 0.931 41 H 0.148 0.852 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.030 0.970 46 H 0.263 0.737 47 H 0.042 0.958 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.155 7.693 21.282 29.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 H 0.089 0.911 4 C -0.189 4.189 5 C -0.186 4.186 6 C 0.009 3.991 7 H 0.108 0.892 8 C -0.016 4.016 9 N -0.347 5.347 10 C 0.294 3.706 11 O -0.387 6.387 12 C 0.285 3.715 13 O -0.414 6.414 14 N -0.300 5.300 15 C -0.065 4.065 16 C -0.078 4.078 17 N -0.267 5.267 18 C 0.062 3.938 19 C -0.590 4.590 20 H 0.073 0.927 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.717 3.283 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.203 1.203 27 C -0.078 4.078 28 C -0.012 4.012 29 O -0.289 6.289 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.164 0.836 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.099 0.901 49 H 0.107 0.893 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.934 8.275 20.813 28.693 hybrid contribution 0.142 -2.088 0.568 2.168 sum -17.792 6.187 21.380 28.495 Atomic orbital electron populations 1.21885 0.93540 1.02978 1.02484 1.23031 0.95048 0.95632 0.84643 0.91059 1.23328 0.95951 1.01069 0.98543 1.23098 0.98215 1.03382 0.93885 1.22996 0.85207 0.96893 0.93961 0.89175 1.21926 0.97771 1.02331 0.79528 1.45648 1.21870 1.61152 1.06017 1.20339 0.83687 0.79004 0.87529 1.90367 1.24809 1.42751 1.80782 1.19855 0.84908 0.80112 0.86674 1.90727 1.23720 1.46154 1.80768 1.48132 1.14402 1.60178 1.07247 1.23559 0.80150 0.97276 1.05551 1.22341 0.97443 0.98391 0.89621 1.62518 1.03348 1.52248 1.08556 1.19768 0.87808 0.91402 0.94860 1.21702 1.19910 0.99059 1.18325 0.92699 1.24957 0.95538 0.98458 0.94788 1.69928 1.22066 1.36052 1.24762 0.86706 0.77768 0.84608 0.79242 1.20302 1.21149 1.20271 1.22223 0.89347 0.95583 1.00642 1.22026 0.99670 1.00847 0.78614 1.88544 1.41459 1.64601 1.34340 0.91240 0.91727 0.91819 0.90094 0.89694 0.89377 0.89793 0.89726 0.90492 0.74668 0.91290 0.83581 0.94087 0.90325 0.94675 0.95176 0.92725 0.93952 0.90143 0.89292 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.62 37.16 0.36 -0.48 16 2 C 0.07 0.47 4.08 -25.70 -0.10 0.37 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.15 -0.68 6.57 -24.48 -0.16 -0.84 16 5 C -0.15 -0.71 6.54 -24.78 -0.16 -0.87 16 6 C 0.07 0.48 3.59 -26.01 -0.09 0.38 16 7 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 8 C 0.11 0.96 5.23 -4.04 -0.02 0.93 16 9 N -0.69 -7.99 5.46 -60.73 -0.33 -8.32 16 10 C 0.51 7.42 7.81 -11.59 -0.09 7.33 16 11 O -0.51 -7.96 13.03 5.50 0.07 -7.89 16 12 C 0.50 8.28 7.77 -11.59 -0.09 8.19 16 13 O -0.54 -9.52 15.95 5.50 0.09 -9.43 16 14 N -0.57 -9.63 3.00 -172.69 -0.52 -10.15 16 15 C 0.06 0.93 6.39 -3.36 -0.02 0.91 16 16 C 0.05 1.01 5.17 -3.46 -0.02 1.00 16 17 N -0.54 -11.61 4.83 -235.47 -1.14 -12.75 16 18 C 0.19 4.78 5.11 -4.98 -0.03 4.76 16 19 C -0.55 -15.13 7.76 -34.44 -0.27 -15.39 16 20 H 0.05 1.51 5.88 -52.48 -0.31 1.21 16 21 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 22 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 23 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.05 1.01 5.24 -3.71 -0.02 0.99 16 28 C 0.11 1.85 6.59 -3.61 -0.02 1.83 16 29 O -0.37 -3.28 10.54 -35.23 -0.37 -3.65 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.35 8.06 -51.93 -0.42 -0.07 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.37 7.85 -51.93 -0.41 -0.04 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.42 4.67 7.89 -40.82 -0.32 4.35 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.15 2.43 3.91 -56.55 -0.22 2.21 16 42 H 0.04 0.90 6.62 -51.93 -0.34 0.55 16 43 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 44 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.04 0.92 7.10 -51.93 -0.37 0.56 16 48 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16 49 H 0.09 1.45 7.07 -51.93 -0.37 1.08 16 50 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 394.53 15.07 5.95 5.95 Total: -1.00 -31.87 394.53 -9.60 -41.47 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.22 Total: 2.73 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -0.84 Total: 10.84 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -1.25 Total: -56.57 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.21 Total: -20.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.87 -9.60 -41.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602277921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.142 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds