Wall clock time and date at job start Tue Mar 31 2020 23:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.26990 * 2 1 4 4 C 1.54948 * 110.30814 * 122.08458 * 2 1 3 5 5 C 1.55309 * 100.93933 * 155.36165 * 4 2 1 6 6 C 1.54380 * 102.24991 * 325.87017 * 5 4 2 7 7 H 1.09007 * 109.83048 * 261.74554 * 6 5 4 8 8 C 1.53005 * 109.82649 * 140.87112 * 6 5 4 9 9 N 1.46505 * 109.46879 * 180.17982 * 8 6 5 10 10 C 1.34779 * 119.99784 * 179.97438 * 9 8 6 11 11 O 1.21344 * 120.00248 * 0.02562 * 10 9 8 12 12 C 1.49444 * 119.99655 * 180.02562 * 10 9 8 13 13 O 1.21347 * 120.00552 * 6.62612 * 12 10 9 14 14 N 1.34782 * 120.00088 * 186.35870 * 12 10 9 15 15 C 1.47078 * 120.87752 * 358.40356 * 14 12 10 16 16 C 1.53702 * 108.27683 * 128.75501 * 15 14 12 17 17 N 1.46898 * 109.25134 * 54.08343 * 16 15 14 18 18 C 1.46900 * 110.99850 * 172.60420 * 17 16 15 19 19 C 1.50701 * 109.47037 * 59.56825 * 18 17 16 20 20 H 1.08004 * 119.99565 * 355.11147 * 19 18 17 21 21 C 1.37880 * 120.00407 * 175.10557 * 19 18 17 22 22 N 1.31506 * 119.99450 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99992 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46790 * 60.00696 * 23 21 19 25 25 H 1.48502 * 109.46921 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47638 * 300.00118 * 23 21 19 27 27 C 1.46893 * 111.27086 * 296.75554 * 17 16 15 28 28 C 1.47073 * 120.88407 * 178.68386 * 14 12 10 29 29 O 1.43233 * 107.66996 * 21.30907 * 6 5 4 30 30 H 1.09000 * 109.47078 * 297.91005 * 1 2 3 31 31 H 1.09000 * 109.46660 * 57.91184 * 1 2 3 32 32 H 1.08995 * 109.46835 * 177.91216 * 1 2 3 33 33 H 1.09000 * 111.12380 * 37.44859 * 4 2 1 34 34 H 1.08994 * 111.16231 * 273.29902 * 4 2 1 35 35 H 1.08993 * 110.84513 * 207.67759 * 5 4 2 36 36 H 1.09004 * 110.84518 * 84.05569 * 5 4 2 37 37 H 1.09000 * 109.47059 * 60.18702 * 8 6 5 38 38 H 1.08992 * 109.47452 * 300.18081 * 8 6 5 39 39 H 0.96998 * 119.99877 * 0.02562 * 9 8 6 40 40 H 1.09000 * 109.63467 * 248.52600 * 15 14 12 41 41 H 1.09006 * 109.63139 * 9.10984 * 15 14 12 42 42 H 1.08997 * 109.64806 * 294.08121 * 16 15 14 43 43 H 1.09001 * 109.44151 * 173.96204 * 16 15 14 44 44 H 1.09002 * 109.47385 * 179.56464 * 18 17 16 45 45 H 1.08999 * 109.47398 * 299.57412 * 18 17 16 46 46 H 0.97005 * 119.99634 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.49688 * 303.14374 * 27 17 16 48 48 H 1.09004 * 109.51403 * 183.08047 * 27 17 16 49 49 H 1.08998 * 109.63101 * 350.89658 * 28 14 12 50 50 H 1.09004 * 109.62615 * 111.47754 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7719 1.2312 5 6 3.4700 -1.2018 0.7202 6 6 3.2113 -1.4426 -0.7826 7 1 3.0642 -2.5069 -0.9666 8 6 4.3992 -0.9339 -1.6018 9 7 4.1437 -1.1622 -3.0262 10 6 5.0591 -0.7908 -3.9430 11 8 6.0951 -0.2677 -3.5887 12 6 4.7982 -1.0233 -5.3961 13 8 3.7161 -1.4344 -5.7601 14 7 5.7630 -0.7711 -6.3028 15 6 7.0676 -0.2340 -5.8872 16 6 8.1685 -1.1178 -6.4949 17 7 7.9693 -1.2096 -7.9474 18 6 9.0959 -1.8988 -8.5907 19 6 9.2247 -3.2889 -8.0231 20 1 8.5900 -3.5995 -7.2063 21 6 10.1526 -4.1641 -8.5465 22 7 10.9256 -3.7856 -9.5408 23 14 10.3126 -5.8869 -7.8424 24 1 9.0204 -6.6037 -7.9897 25 1 11.3742 -6.6239 -8.5739 26 1 10.6708 -5.8025 -6.4038 27 6 6.6962 -1.8673 -8.2702 28 6 5.5371 -1.0201 -7.7346 29 8 2.0282 -0.7193 -1.1415 30 1 -0.3633 0.4810 0.9081 31 1 -0.3632 0.5459 -0.8707 32 1 -0.3633 -1.0270 -0.0374 33 1 1.4472 -1.6402 1.4523 34 1 2.1496 -0.1189 2.1001 35 1 3.7967 -2.1193 1.2095 36 1 4.1975 -0.4031 0.8654 37 1 5.3013 -1.4685 -1.3043 38 1 4.5335 0.1329 -1.4232 39 1 3.3154 -1.5800 -3.3095 40 1 7.1743 0.7890 -6.2481 41 1 7.1412 -0.2511 -4.7998 42 1 8.1210 -2.1151 -6.0575 43 1 9.1435 -0.6762 -6.2886 44 1 8.9192 -1.9598 -9.6646 45 1 10.0154 -1.3439 -8.4047 46 1 11.5787 -4.4013 -9.9088 47 1 6.6691 -2.8542 -7.8082 48 1 6.6029 -1.9693 -9.3514 49 1 4.5982 -1.5571 -7.8692 50 1 5.4995 -0.0712 -8.2697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602277921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:33 Heat of formation + Delta-G solvation = -115.301624 kcal Electronic energy + Delta-G solvation = -30087.528433 eV Core-core repulsion = 25921.451889 eV Total energy + Delta-G solvation = -4166.076545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07994 -40.74563 -39.87391 -39.02982 -36.64947 -35.69561 -34.30386 -33.25029 -32.78500 -32.12719 -30.12768 -29.21835 -27.47110 -25.98474 -24.73889 -24.42715 -23.40754 -22.64547 -21.80552 -21.67983 -20.67072 -18.99257 -18.35337 -18.12755 -18.02084 -17.19126 -17.09513 -16.80827 -16.62358 -16.21474 -16.03034 -15.75254 -15.58356 -15.19927 -15.12417 -15.00766 -14.48611 -14.27520 -14.20901 -13.86269 -13.75553 -13.59852 -13.16922 -13.06794 -12.98616 -12.94532 -12.78157 -12.64731 -12.51990 -12.35040 -12.21416 -12.15629 -11.90503 -11.85190 -11.75839 -11.67522 -11.66360 -10.63357 -10.54410 -10.40651 -10.18880 -9.90868 -9.08121 -8.18340 -6.37485 0.26070 1.21434 1.34448 1.35196 1.43616 2.04415 2.34559 2.35006 2.78533 3.06653 3.22693 3.31990 3.50333 3.64125 3.85315 3.97913 4.07318 4.12501 4.15161 4.28501 4.33007 4.34499 4.44385 4.51028 4.52295 4.56840 4.60787 4.72381 4.80435 4.83479 4.86396 4.93265 5.01145 5.06900 5.09730 5.12226 5.15652 5.25717 5.26889 5.30163 5.33006 5.40935 5.70571 5.89860 5.99764 6.08148 6.12863 6.24107 6.43005 6.61862 6.81525 6.85806 7.33619 8.83976 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.002258 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.321942 B =12395.003675 C =13140.871306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 H 0.070 0.930 4 C -0.144 4.144 5 C -0.143 4.143 6 C 0.068 3.932 7 H 0.095 0.905 8 C 0.106 3.894 9 N -0.680 5.680 10 C 0.513 3.487 11 O -0.523 6.523 12 C 0.501 3.499 13 O -0.549 6.549 14 N -0.575 5.575 15 C 0.071 3.929 16 C 0.054 3.946 17 N -0.538 5.538 18 C 0.199 3.801 19 C -0.558 4.558 20 H 0.050 0.950 21 C 0.014 3.986 22 N -0.922 5.922 23 Si 0.954 3.046 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.271 1.271 27 C 0.055 3.945 28 C 0.120 3.880 29 O -0.395 6.395 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.419 0.581 40 H 0.082 0.918 41 H 0.156 0.844 42 H 0.017 0.983 43 H 0.078 0.922 44 H 0.012 0.988 45 H 0.009 0.991 46 H 0.266 0.734 47 H 0.017 0.983 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.253 7.542 23.556 31.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.182 4.182 5 C -0.181 4.181 6 C 0.010 3.990 7 H 0.112 0.888 8 C -0.017 4.017 9 N -0.332 5.332 10 C 0.294 3.706 11 O -0.402 6.402 12 C 0.284 3.716 13 O -0.429 6.429 14 N -0.307 5.307 15 C -0.050 4.050 16 C -0.075 4.075 17 N -0.262 5.262 18 C 0.073 3.927 19 C -0.597 4.597 20 H 0.068 0.932 21 C -0.186 4.186 22 N -0.561 5.561 23 Si 0.779 3.221 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.196 1.196 27 C -0.074 4.074 28 C -0.002 4.002 29 O -0.315 6.315 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.256 0.744 40 H 0.100 0.900 41 H 0.172 0.828 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.031 0.969 45 H 0.027 0.973 46 H 0.075 0.925 47 H 0.035 0.965 48 H 0.100 0.900 49 H 0.115 0.885 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.068 8.128 23.120 31.052 hybrid contribution 0.418 -2.007 -0.125 2.053 sum -18.651 6.121 22.995 30.234 Atomic orbital electron populations 1.21887 0.93153 1.02775 1.02884 1.23220 0.95468 0.95700 0.84961 0.91191 1.23316 0.95514 1.01216 0.98128 1.23120 0.98595 1.04349 0.92078 1.23058 0.84063 0.96767 0.95118 0.88768 1.22161 0.99140 1.02501 0.77902 1.45705 1.21046 1.59597 1.06834 1.19986 0.84127 0.79534 0.86936 1.90340 1.25420 1.43883 1.80593 1.20230 0.84473 0.79332 0.87568 1.90716 1.24246 1.46638 1.81255 1.48208 1.14632 1.60467 1.07443 1.23465 0.78909 0.96914 1.05720 1.22360 0.98952 0.97867 0.88340 1.62462 1.02801 1.51426 1.09501 1.19449 0.88534 0.90922 0.93801 1.21899 1.19729 0.99962 1.18115 0.93177 1.25773 0.95231 1.02476 0.95130 1.70040 1.22678 1.37499 1.25896 0.85670 0.77911 0.79786 0.78698 1.19842 1.20402 1.19602 1.22223 0.89547 0.94905 1.00766 1.21921 0.98264 1.01161 0.78847 1.88522 1.42062 1.65011 1.35949 0.89399 0.92919 0.92155 0.89711 0.88052 0.87900 0.89268 0.88903 0.90649 0.74423 0.89961 0.82795 0.96430 0.90407 0.96941 0.97279 0.92513 0.96481 0.90022 0.88537 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.62 71.98 0.69 -0.79 16 2 C 0.06 0.72 4.08 31.26 0.13 0.85 16 3 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.14 -0.95 6.57 32.05 0.21 -0.74 16 5 C -0.14 -1.03 6.54 31.86 0.21 -0.82 16 6 C 0.07 0.84 3.59 31.06 0.11 0.96 16 7 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 8 C 0.11 1.70 5.23 86.38 0.45 2.15 16 9 N -0.68 -14.80 5.46 -464.41 -2.54 -17.34 16 10 C 0.51 14.24 7.81 87.27 0.68 14.92 16 11 O -0.52 -15.64 13.03 -3.23 -0.04 -15.68 16 12 C 0.50 15.96 7.77 87.27 0.68 16.64 16 13 O -0.55 -18.95 15.95 -3.24 -0.05 -19.01 16 14 N -0.58 -18.93 3.00 -818.63 -2.46 -21.39 16 15 C 0.07 2.30 6.39 86.51 0.55 2.86 16 16 C 0.05 2.14 5.17 86.54 0.45 2.59 16 17 N -0.54 -23.30 4.83 -898.89 -4.34 -27.64 16 18 C 0.20 10.51 5.11 85.56 0.44 10.95 16 19 C -0.56 -31.21 7.76 25.60 0.20 -31.01 16 20 H 0.05 2.81 5.88 -2.91 -0.02 2.79 16 21 C 0.01 0.78 5.46 84.66 0.46 1.24 16 22 N -0.92 -54.78 13.29 21.45 0.28 -54.49 16 23 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 C 0.05 2.17 5.24 86.38 0.45 2.62 16 28 C 0.12 3.90 6.59 86.35 0.57 4.47 16 29 O -0.40 -6.56 10.54 -148.98 -1.57 -8.13 16 30 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.51 8.06 -2.39 -0.02 0.49 16 34 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.56 7.85 -2.38 -0.02 0.54 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.42 8.93 7.89 -92.71 -0.73 8.20 16 40 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.16 4.93 3.91 -75.66 -0.30 4.64 16 42 H 0.02 0.78 6.62 -2.39 -0.02 0.76 16 43 H 0.08 3.07 8.11 -2.39 -0.02 3.05 16 44 H 0.01 0.70 8.07 -2.39 -0.02 0.69 16 45 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 47 H 0.02 0.75 7.10 -2.39 -0.02 0.74 16 48 H 0.08 3.16 8.06 -2.39 -0.02 3.15 16 49 H 0.10 3.02 7.07 -2.39 -0.02 3.01 16 50 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -68.28 394.53 -2.48 -70.76 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -0.07 Total: 19.64 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: 6.28 Total: 26.87 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -9.05 Total: -120.87 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -1.66 Total: -42.82 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -68.28 -2.48 -70.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602277921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.541 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds