Wall clock time and date at job start Tue Mar 31 2020 23:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00502 * 2 1 4 4 O 1.20835 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00600 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.77568 * 56.75648 * 5 3 2 7 7 C 1.55157 * 110.71801 * 293.52405 * 5 3 2 8 8 C 1.55132 * 101.48594 * 205.96603 * 7 5 3 9 9 N 1.47425 * 104.72112 * 37.29541 * 8 7 5 10 10 C 1.34772 * 125.64862 * 155.81189 * 9 8 7 11 11 O 1.21588 * 120.00141 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99973 * 359.70153 * 10 9 8 13 13 C 1.46499 * 120.00311 * 179.97438 * 12 10 9 14 14 C 1.53041 * 109.45746 * 275.06633 * 13 12 10 15 15 C 1.53187 * 109.31320 * 178.61186 * 14 13 12 16 16 N 1.46928 * 108.77464 * 54.63298 * 15 14 13 17 17 C 1.36937 * 120.63118 * 126.37100 * 16 15 14 18 18 H 1.07997 * 120.00226 * 207.70135 * 17 16 15 19 19 C 1.38812 * 119.99945 * 27.69763 * 17 16 15 20 20 N 1.31614 * 120.00244 * 17.34975 * 19 17 16 21 21 Si 1.86804 * 119.99996 * 197.35401 * 19 17 16 22 22 H 1.48500 * 109.47426 * 89.99873 * 21 19 17 23 23 H 1.48498 * 109.47083 * 210.00213 * 21 19 17 24 24 H 1.48501 * 109.46916 * 329.99682 * 21 19 17 25 25 C 1.46924 * 118.74163 * 306.38977 * 16 15 14 26 26 C 1.53038 * 109.46093 * 154.99577 * 13 12 10 27 27 C 1.47021 * 108.70072 * 335.55490 * 9 8 7 28 28 H 1.09002 * 109.88338 * 120.86291 * 27 9 8 29 29 C 1.53001 * 109.87885 * 241.86668 * 27 9 8 30 30 H 1.08997 * 109.47121 * 59.99377 * 1 2 3 31 31 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47109 * 299.99935 * 1 2 3 33 33 H 1.08998 * 111.00806 * 324.20931 * 7 5 3 34 34 H 1.08998 * 111.00327 * 88.01734 * 7 5 3 35 35 H 1.08998 * 110.49165 * 278.45338 * 8 7 5 36 36 H 1.08999 * 110.34066 * 156.05690 * 8 7 5 37 37 H 0.97000 * 119.99522 * 359.97438 * 12 10 9 38 38 H 1.08998 * 109.45841 * 35.01609 * 13 12 10 39 39 H 1.09004 * 109.49252 * 298.56588 * 14 13 12 40 40 H 1.08996 * 109.50139 * 58.65713 * 14 13 12 41 41 H 1.08997 * 109.58683 * 294.84661 * 15 14 13 42 42 H 1.09004 * 109.58441 * 174.41871 * 15 14 13 43 43 H 0.97001 * 120.00027 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.58855 * 293.82769 * 25 16 15 45 45 H 1.08989 * 109.59013 * 173.39300 * 25 16 15 46 46 H 1.08989 * 109.49793 * 301.33075 * 26 13 12 47 47 H 1.08995 * 109.49781 * 61.43854 * 26 13 12 48 48 H 1.09004 * 109.47128 * 58.55140 * 29 27 9 49 49 H 1.09002 * 109.46846 * 178.54738 * 29 27 9 50 50 H 1.08999 * 109.47306 * 298.54705 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9814 0.7373 -0.8532 7 6 4.1454 0.7248 1.3297 8 6 5.4952 1.4845 1.4166 9 7 5.2021 2.8303 0.8911 10 6 5.8922 3.9523 1.1762 11 8 5.5595 5.0126 0.6828 12 7 6.9478 3.9000 2.0126 13 6 7.6983 5.1195 2.3221 14 6 8.7529 5.3578 1.2390 15 6 9.5123 6.6519 1.5473 16 7 10.0551 6.5685 2.9101 17 6 11.3876 6.7796 3.1446 18 1 11.8686 6.3085 3.9890 19 6 12.1202 7.5990 2.2968 20 7 11.5000 8.4333 1.4897 21 14 13.9865 7.5175 2.3013 22 1 14.4403 6.5074 1.3119 23 1 14.5409 8.8472 1.9411 24 1 14.4618 7.1332 3.6547 25 6 9.1410 6.2539 4.0166 26 6 8.3857 4.9641 3.6806 27 6 4.0361 2.7447 -0.0004 28 1 3.2394 3.3909 0.3682 29 6 4.4326 3.1645 -1.4173 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8901 33 1 3.4980 0.9743 2.1704 34 1 4.3072 -0.3514 1.2700 35 1 6.2497 0.9933 0.8022 36 1 5.8293 1.5461 2.4523 37 1 7.2105 3.0549 2.4096 38 1 7.0147 5.9678 2.3559 39 1 9.4516 4.5213 1.2213 40 1 8.2645 5.4450 0.2685 41 1 8.8320 7.5006 1.4763 42 1 10.3288 6.7748 0.8357 43 1 12.0119 9.0062 0.8975 44 1 8.4304 7.0701 4.1468 45 1 9.7124 6.1142 4.9341 46 1 7.6360 4.7713 4.4478 47 1 9.0879 4.1315 3.6398 48 1 5.2345 2.5194 -1.7764 49 1 3.5702 3.0739 -2.0777 50 1 4.7755 4.1991 -1.4072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786753322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:13 Heat of formation + Delta-G solvation = -87.287918 kcal Electronic energy + Delta-G solvation = -30460.079992 eV Core-core repulsion = 26295.218212 eV Total energy + Delta-G solvation = -4164.861779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.30085 -40.14319 -38.32837 -37.10605 -36.67124 -34.40019 -32.70634 -31.80184 -31.42408 -29.94752 -29.31575 -28.37948 -26.52226 -25.04059 -23.35186 -22.92897 -22.18241 -21.73925 -20.62120 -19.69911 -19.19570 -18.43625 -17.69633 -17.19937 -16.78649 -16.57681 -16.19313 -15.43292 -14.90618 -14.66032 -14.46605 -14.29965 -13.92588 -13.82932 -13.54404 -13.47930 -13.38256 -13.10021 -12.94881 -12.81228 -12.54350 -12.37715 -12.32587 -12.14574 -11.86253 -11.45409 -11.41270 -11.26036 -11.15018 -11.08689 -10.89223 -10.76314 -10.72217 -10.34336 -10.19455 -10.04387 -9.90318 -9.72084 -9.51678 -8.86415 -8.53470 -8.33837 -6.66172 -5.75535 -3.18299 1.74225 2.08822 2.71058 3.38348 3.39692 3.46234 3.47741 3.79159 3.95509 4.13572 4.31484 4.51663 4.63340 4.67394 4.73073 4.75728 4.80890 5.08711 5.13424 5.20698 5.26378 5.33391 5.37057 5.42849 5.49643 5.50454 5.58984 5.69028 5.86713 5.88057 5.91978 6.09802 6.13337 6.25597 6.27654 6.42992 6.50016 6.64930 6.68954 6.82118 6.95128 7.00105 7.14190 7.29129 7.43298 7.72522 7.82404 8.11480 8.47812 8.79004 9.23825 9.87310 10.44028 11.32896 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031107 B = 0.002102 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.911448 B =13316.891992 C =13535.482717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.496 6.496 5 C -0.095 4.095 6 H 0.126 0.874 7 C -0.117 4.117 8 C 0.099 3.901 9 N -0.639 5.639 10 C 0.723 3.277 11 O -0.579 6.579 12 N -0.737 5.737 13 C 0.169 3.831 14 C -0.146 4.146 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.149 3.851 26 C -0.138 4.138 27 C 0.166 3.834 28 H 0.094 0.906 29 C -0.163 4.163 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.389 0.611 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.089 0.911 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.953 -21.999 -1.941 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.383 6.383 5 C -0.115 4.115 6 H 0.143 0.857 7 C -0.155 4.155 8 C -0.024 4.024 9 N -0.379 5.379 10 C 0.425 3.575 11 O -0.456 6.456 12 N -0.391 5.391 13 C 0.065 3.935 14 C -0.186 4.186 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.022 3.978 26 C -0.178 4.178 27 C 0.062 3.938 28 H 0.112 0.888 29 C -0.221 4.221 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.222 0.778 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.081 0.919 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.287 -20.649 -2.375 28.355 hybrid contribution 0.826 -0.523 0.046 0.979 sum -18.461 -21.172 -2.330 28.187 Atomic orbital electron populations 1.23311 0.75984 1.03841 1.02786 1.86491 1.23646 1.33109 1.84081 1.23300 0.91419 0.81502 0.72395 1.90717 1.66854 1.36229 1.44474 1.22133 0.87942 0.99056 1.02333 0.85658 1.22801 0.96331 1.01079 0.95276 1.22319 0.96852 0.83227 0.99997 1.47632 1.32944 1.06819 1.50542 1.15438 0.79714 0.82402 0.79977 1.90937 1.70365 1.27694 1.56619 1.45546 1.31432 1.12541 1.49552 1.20924 0.92271 0.85280 0.95034 1.22573 0.97104 1.01713 0.97254 1.20770 0.96407 0.90658 0.87466 1.44115 1.04593 1.81849 1.00979 1.19180 0.84101 1.22533 1.12502 0.91627 1.25058 0.98165 0.95896 1.00589 1.70040 1.34199 1.23257 1.26982 0.86290 0.85766 0.76884 0.77809 1.21496 1.21794 1.20467 1.20837 0.92455 0.92404 0.92149 1.22341 0.98921 1.01564 0.94981 1.21170 0.88305 0.93022 0.91338 0.88765 1.22175 1.01368 1.04069 0.94514 0.91732 0.87915 0.91745 0.89915 0.88315 0.90825 0.90226 0.77776 0.90051 0.92849 0.92826 0.96116 0.89269 0.93589 0.96154 0.92350 0.92704 0.91942 0.92421 0.91919 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.69 10.56 -39.24 -0.41 -3.11 16 3 C 0.47 4.33 7.26 36.01 0.26 4.59 16 4 O -0.50 -6.17 15.17 -18.76 -0.28 -6.45 16 5 C -0.09 -0.72 2.98 -89.94 -0.27 -0.99 16 6 H 0.13 0.70 7.85 -51.93 -0.41 0.29 16 7 C -0.12 -0.68 6.53 -24.46 -0.16 -0.84 16 8 C 0.10 0.73 6.59 -2.41 -0.02 0.72 16 9 N -0.64 -7.60 3.06 -168.56 -0.52 -8.11 16 10 C 0.72 11.55 8.24 -86.92 -0.72 10.84 16 11 O -0.58 -11.81 15.05 5.29 0.08 -11.73 16 12 N -0.74 -10.80 5.04 -58.64 -0.30 -11.10 16 13 C 0.17 3.01 2.42 -67.89 -0.16 2.85 16 14 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 15 C 0.17 4.28 5.31 -3.71 -0.02 4.26 16 16 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 17 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 20 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 21 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 26 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 27 C 0.17 1.87 2.88 -66.96 -0.19 1.68 16 28 H 0.09 1.31 6.81 -51.93 -0.35 0.96 16 29 C -0.16 -1.86 9.10 37.16 0.34 -1.52 16 30 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.35 8.13 -51.92 -0.42 -0.07 16 33 H 0.08 0.52 8.04 -51.93 -0.42 0.11 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.50 7.29 -51.93 -0.38 0.13 16 37 H 0.39 4.50 7.08 -40.82 -0.29 4.21 16 38 H 0.08 1.66 7.57 -51.93 -0.39 1.27 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 2.46 6.04 -51.93 -0.31 2.14 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.16 7.93 -51.94 -0.41 0.75 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.08 1.19 6.89 -51.93 -0.36 0.83 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -34.80 395.57 -9.18 -43.98 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.37 Total: 1.98 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: -0.42 Total: 13.17 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.71 Total: -60.54 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.62 Total: -21.29 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.80 -9.18 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786753322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.304 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds