Wall clock time and date at job start Tue Mar 31 2020 23:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00502 * 2 1 4 4 O 1.20835 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00600 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.77568 * 56.75648 * 5 3 2 7 7 C 1.55157 * 110.71801 * 293.52405 * 5 3 2 8 8 C 1.55132 * 101.48594 * 205.96603 * 7 5 3 9 9 N 1.47425 * 104.72112 * 37.29541 * 8 7 5 10 10 C 1.34772 * 125.64862 * 155.81189 * 9 8 7 11 11 O 1.21588 * 120.00141 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99973 * 359.70153 * 10 9 8 13 13 C 1.46499 * 120.00311 * 179.97438 * 12 10 9 14 14 C 1.53041 * 109.45746 * 275.06633 * 13 12 10 15 15 C 1.53187 * 109.31320 * 178.61186 * 14 13 12 16 16 N 1.46928 * 108.77464 * 54.63298 * 15 14 13 17 17 C 1.36937 * 120.63118 * 126.37100 * 16 15 14 18 18 H 1.07997 * 120.00226 * 207.70135 * 17 16 15 19 19 C 1.38812 * 119.99945 * 27.69763 * 17 16 15 20 20 N 1.31614 * 120.00244 * 17.34975 * 19 17 16 21 21 Si 1.86804 * 119.99996 * 197.35401 * 19 17 16 22 22 H 1.48500 * 109.47426 * 89.99873 * 21 19 17 23 23 H 1.48498 * 109.47083 * 210.00213 * 21 19 17 24 24 H 1.48501 * 109.46916 * 329.99682 * 21 19 17 25 25 C 1.46924 * 118.74163 * 306.38977 * 16 15 14 26 26 C 1.53038 * 109.46093 * 154.99577 * 13 12 10 27 27 C 1.47021 * 108.70072 * 335.55490 * 9 8 7 28 28 H 1.09002 * 109.88338 * 120.86291 * 27 9 8 29 29 C 1.53001 * 109.87885 * 241.86668 * 27 9 8 30 30 H 1.08997 * 109.47121 * 59.99377 * 1 2 3 31 31 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47109 * 299.99935 * 1 2 3 33 33 H 1.08998 * 111.00806 * 324.20931 * 7 5 3 34 34 H 1.08998 * 111.00327 * 88.01734 * 7 5 3 35 35 H 1.08998 * 110.49165 * 278.45338 * 8 7 5 36 36 H 1.08999 * 110.34066 * 156.05690 * 8 7 5 37 37 H 0.97000 * 119.99522 * 359.97438 * 12 10 9 38 38 H 1.08998 * 109.45841 * 35.01609 * 13 12 10 39 39 H 1.09004 * 109.49252 * 298.56588 * 14 13 12 40 40 H 1.08996 * 109.50139 * 58.65713 * 14 13 12 41 41 H 1.08997 * 109.58683 * 294.84661 * 15 14 13 42 42 H 1.09004 * 109.58441 * 174.41871 * 15 14 13 43 43 H 0.97001 * 120.00027 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.58855 * 293.82769 * 25 16 15 45 45 H 1.08989 * 109.59013 * 173.39300 * 25 16 15 46 46 H 1.08989 * 109.49793 * 301.33075 * 26 13 12 47 47 H 1.08995 * 109.49781 * 61.43854 * 26 13 12 48 48 H 1.09004 * 109.47128 * 58.55140 * 29 27 9 49 49 H 1.09002 * 109.46846 * 178.54738 * 29 27 9 50 50 H 1.08999 * 109.47306 * 298.54705 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9814 0.7373 -0.8532 7 6 4.1454 0.7248 1.3297 8 6 5.4952 1.4845 1.4166 9 7 5.2021 2.8303 0.8911 10 6 5.8922 3.9523 1.1762 11 8 5.5595 5.0126 0.6828 12 7 6.9478 3.9000 2.0126 13 6 7.6983 5.1195 2.3221 14 6 8.7529 5.3578 1.2390 15 6 9.5123 6.6519 1.5473 16 7 10.0551 6.5685 2.9101 17 6 11.3876 6.7796 3.1446 18 1 11.8686 6.3085 3.9890 19 6 12.1202 7.5990 2.2968 20 7 11.5000 8.4333 1.4897 21 14 13.9865 7.5175 2.3013 22 1 14.4403 6.5074 1.3119 23 1 14.5409 8.8472 1.9411 24 1 14.4618 7.1332 3.6547 25 6 9.1410 6.2539 4.0166 26 6 8.3857 4.9641 3.6806 27 6 4.0361 2.7447 -0.0004 28 1 3.2394 3.3909 0.3682 29 6 4.4326 3.1645 -1.4173 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8901 33 1 3.4980 0.9743 2.1704 34 1 4.3072 -0.3514 1.2700 35 1 6.2497 0.9933 0.8022 36 1 5.8293 1.5461 2.4523 37 1 7.2105 3.0549 2.4096 38 1 7.0147 5.9678 2.3559 39 1 9.4516 4.5213 1.2213 40 1 8.2645 5.4450 0.2685 41 1 8.8320 7.5006 1.4763 42 1 10.3288 6.7748 0.8357 43 1 12.0119 9.0062 0.8975 44 1 8.4304 7.0701 4.1468 45 1 9.7124 6.1142 4.9341 46 1 7.6360 4.7713 4.4478 47 1 9.0879 4.1315 3.6398 48 1 5.2345 2.5194 -1.7764 49 1 3.5702 3.0739 -2.0777 50 1 4.7755 4.1991 -1.4072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786753322.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:12 Heat of formation + Delta-G solvation = -110.415220 kcal Electronic energy + Delta-G solvation = -30461.082867 eV Core-core repulsion = 26295.218212 eV Total energy + Delta-G solvation = -4165.864654 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.07875 -41.18419 -39.54251 -38.42646 -37.47279 -36.01163 -34.16645 -33.03004 -32.36269 -31.66145 -30.92798 -29.00446 -27.24338 -26.85973 -24.57509 -23.89895 -23.54200 -23.20313 -21.46129 -21.17040 -20.41530 -19.41976 -18.74451 -18.43668 -17.89437 -17.35669 -17.28745 -16.77245 -16.52112 -15.87861 -15.69981 -15.34862 -15.31101 -15.01678 -14.77845 -14.60517 -14.46877 -14.34651 -14.11908 -13.98246 -13.79706 -13.40352 -13.17929 -13.07305 -13.01748 -12.83275 -12.63936 -12.60724 -12.59469 -12.13046 -12.05743 -12.01693 -11.88417 -11.84077 -11.80942 -11.53223 -11.50042 -11.39123 -11.14321 -10.57604 -10.13606 -9.52984 -8.71496 -7.86073 -5.32355 1.06024 1.31285 1.48655 1.50059 1.59185 1.82698 2.14942 2.52710 2.95693 3.21831 3.30213 3.39082 3.67457 3.71834 3.88848 4.04423 4.10683 4.14739 4.20367 4.30508 4.32541 4.33566 4.35272 4.48785 4.52037 4.65284 4.67147 4.68354 4.73330 4.80909 4.84699 4.95530 4.98104 5.04123 5.09065 5.09773 5.13690 5.19829 5.29227 5.32726 5.38918 5.46860 5.60953 5.65336 5.70500 6.04002 6.39341 6.63288 7.01406 7.14018 7.59223 7.85155 8.38228 9.21055 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031107 B = 0.002102 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.911448 B =13316.891992 C =13535.482717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.475 3.525 4 O -0.538 6.538 5 C -0.085 4.085 6 H 0.156 0.844 7 C -0.105 4.105 8 C 0.090 3.910 9 N -0.635 5.635 10 C 0.716 3.284 11 O -0.634 6.634 12 N -0.721 5.721 13 C 0.181 3.819 14 C -0.128 4.128 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.259 4.259 18 H 0.076 0.924 19 C -0.057 4.057 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.263 1.263 25 C 0.141 3.859 26 C -0.119 4.119 27 C 0.161 3.839 28 H 0.059 0.941 29 C -0.157 4.157 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.410 0.590 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.041 0.959 41 H -0.014 1.014 42 H 0.056 0.944 43 H 0.249 0.751 44 H 0.009 0.991 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 -26.618 -0.631 32.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.319 3.681 4 O -0.428 6.428 5 C -0.104 4.104 6 H 0.174 0.826 7 C -0.143 4.143 8 C -0.031 4.031 9 N -0.373 5.373 10 C 0.418 3.582 11 O -0.515 6.515 12 N -0.376 5.376 13 C 0.076 3.924 14 C -0.168 4.168 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.389 4.389 18 H 0.094 0.906 19 C -0.252 4.252 20 N -0.586 5.586 21 Si 0.799 3.201 22 H -0.212 1.212 23 H -0.226 1.226 24 H -0.188 1.188 25 C 0.015 3.985 26 C -0.159 4.159 27 C 0.056 3.944 28 H 0.077 0.923 29 C -0.215 4.215 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.247 0.753 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.004 0.996 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.027 0.973 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.103 -25.391 -1.019 31.791 hybrid contribution 0.630 0.903 -0.353 1.156 sum -18.473 -24.488 -1.372 30.705 Atomic orbital electron populations 1.23577 0.74755 1.05886 1.02398 1.86483 1.24830 1.31898 1.83478 1.23590 0.91987 0.81348 0.71205 1.90717 1.67840 1.37687 1.46552 1.22107 0.87025 0.96394 1.04883 0.82617 1.22861 0.94836 1.02940 0.93615 1.22740 0.98467 0.80617 1.01264 1.47590 1.32130 1.07565 1.50033 1.15638 0.80045 0.82773 0.79767 1.90910 1.71787 1.30322 1.58452 1.45082 1.30787 1.12307 1.49439 1.20512 0.91110 0.85888 0.94922 1.22299 0.97421 0.99419 0.97702 1.20466 0.94863 0.91784 0.87286 1.44360 1.04853 1.82028 1.01979 1.19590 0.85305 1.21686 1.12322 0.90641 1.25898 1.02646 0.95912 1.00750 1.70221 1.35715 1.24507 1.28154 0.85214 0.80313 0.76249 0.78357 1.21215 1.22619 1.18785 1.21051 0.92041 0.94059 0.91335 1.22128 0.99433 0.99538 0.94765 1.21150 0.87214 0.95335 0.90684 0.92338 1.22093 1.02279 1.01869 0.95291 0.92160 0.84622 0.92233 0.90493 0.84452 0.88438 0.88573 0.75323 0.93078 0.91848 0.94054 0.99590 0.92607 0.94240 0.97259 0.91129 0.89148 0.90291 0.90616 0.90855 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.40 10.56 -51.34 -0.54 -4.94 16 3 C 0.47 7.97 7.26 71.24 0.52 8.49 16 4 O -0.54 -13.52 15.17 21.94 0.33 -13.19 16 5 C -0.08 -1.06 2.98 -10.35 -0.03 -1.09 16 6 H 0.16 1.06 7.85 -2.39 -0.02 1.04 16 7 C -0.10 -0.77 6.53 32.06 0.21 -0.56 16 8 C 0.09 0.96 6.59 86.93 0.57 1.53 16 9 N -0.63 -14.18 3.06 -805.45 -2.47 -16.64 16 10 C 0.72 22.73 8.24 179.05 1.48 24.21 16 11 O -0.63 -27.17 15.05 -3.99 -0.06 -27.23 16 12 N -0.72 -19.87 5.04 -457.69 -2.31 -22.17 16 13 C 0.18 6.37 2.42 45.02 0.11 6.48 16 14 C -0.13 -5.30 5.65 30.67 0.17 -5.13 16 15 C 0.18 9.45 5.31 86.36 0.46 9.91 16 16 N -0.61 -30.94 2.99 -699.10 -2.09 -33.03 16 17 C -0.26 -14.19 9.58 84.03 0.81 -13.39 16 18 H 0.08 3.92 7.89 -2.91 -0.02 3.90 16 19 C -0.06 -3.24 4.91 84.86 0.42 -2.82 16 20 N -0.94 -57.57 11.19 21.65 0.24 -57.33 16 21 Si 0.97 45.17 29.59 68.60 2.03 47.20 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 C 0.14 5.72 6.52 86.37 0.56 6.28 16 26 C -0.12 -3.68 5.55 30.67 0.17 -3.51 16 27 C 0.16 3.54 2.88 45.34 0.13 3.67 16 28 H 0.06 1.73 6.81 -2.39 -0.02 1.71 16 29 C -0.16 -3.62 9.10 71.98 0.66 -2.96 16 30 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 31 H 0.14 0.26 8.14 -2.39 -0.02 0.25 16 32 H 0.06 0.59 8.13 -2.38 -0.02 0.57 16 33 H 0.08 0.71 8.04 -2.39 -0.02 0.69 16 34 H 0.14 0.07 8.14 -2.39 -0.02 0.06 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.10 0.75 7.29 -2.39 -0.02 0.73 16 37 H 0.41 7.94 7.08 -92.71 -0.66 7.28 16 38 H 0.05 2.15 7.57 -2.39 -0.02 2.13 16 39 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 42 H 0.06 3.24 6.04 -2.38 -0.01 3.23 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 46 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.04 1.26 6.89 -2.39 -0.02 1.24 16 Total: -1.00 -82.39 395.57 2.84 -79.55 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.28 Total: 15.26 kcal Atomic # 6 Polarization: 25.12 SS G_CDS: 7.42 Total: 32.54 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -6.62 Total: -129.18 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -0.27 Total: -45.37 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -82.39 2.84 -79.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786753322.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.863 kcal (2) G-P(sol) polarization free energy of solvation -82.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds