Wall clock time and date at job start Tue Mar 31 2020 23:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34222 * 117.00174 * 2 1 4 4 O 1.20825 * 120.00196 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99982 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.63859 * 300.69349 * 5 3 2 7 7 C 1.55152 * 110.87321 * 63.94871 * 5 3 2 8 8 C 1.54913 * 101.58304 * 153.93699 * 7 5 3 9 9 N 1.47425 * 104.82938 * 322.98620 * 8 7 5 10 10 C 1.34774 * 125.64666 * 204.08986 * 9 8 7 11 11 O 1.21596 * 119.99776 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00316 * 0.04779 * 10 9 8 13 13 C 1.46492 * 120.00005 * 179.97438 * 12 10 9 14 14 C 1.53048 * 109.46326 * 275.06459 * 13 12 10 15 15 C 1.53183 * 109.31735 * 178.61790 * 14 13 12 16 16 N 1.46928 * 108.77750 * 54.62965 * 15 14 13 17 17 C 1.36943 * 120.62569 * 126.40932 * 16 15 14 18 18 H 1.08001 * 119.99819 * 207.66508 * 17 16 15 19 19 C 1.38807 * 119.99890 * 27.67751 * 17 16 15 20 20 N 1.31614 * 120.00258 * 17.35506 * 19 17 16 21 21 Si 1.86797 * 119.99838 * 197.36276 * 19 17 16 22 22 H 1.48503 * 109.47391 * 89.99903 * 21 19 17 23 23 H 1.48500 * 109.47447 * 209.99614 * 21 19 17 24 24 H 1.48503 * 109.47358 * 329.99624 * 21 19 17 25 25 C 1.46922 * 118.74214 * 306.40149 * 16 15 14 26 26 C 1.53048 * 109.46101 * 155.00065 * 13 12 10 27 27 C 1.47026 * 108.70359 * 24.12880 * 9 8 7 28 28 H 1.08992 * 110.01079 * 239.44705 * 27 9 8 29 29 C 1.53004 * 109.88035 * 118.35525 * 27 9 8 30 30 H 1.09004 * 109.47336 * 300.00060 * 1 2 3 31 31 H 1.09004 * 109.47497 * 60.00297 * 1 2 3 32 32 H 1.09002 * 109.47456 * 180.02562 * 1 2 3 33 33 H 1.09004 * 111.00290 * 272.00887 * 7 5 3 34 34 H 1.08997 * 111.00899 * 35.85710 * 7 5 3 35 35 H 1.08999 * 110.36556 * 204.15304 * 8 7 5 36 36 H 1.08996 * 110.36823 * 81.82441 * 8 7 5 37 37 H 0.97001 * 119.99600 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.46318 * 35.02634 * 13 12 10 39 39 H 1.09007 * 109.49492 * 298.57086 * 14 13 12 40 40 H 1.08996 * 109.49331 * 58.66263 * 14 13 12 41 41 H 1.09008 * 109.58621 * 294.84849 * 15 14 13 42 42 H 1.08995 * 109.58890 * 174.42583 * 15 14 13 43 43 H 0.97003 * 120.00206 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.58075 * 293.81400 * 25 16 15 45 45 H 1.09005 * 109.58424 * 173.39316 * 25 16 15 46 46 H 1.09001 * 109.49035 * 301.33478 * 26 13 12 47 47 H 1.08995 * 109.49589 * 61.42646 * 26 13 12 48 48 H 1.09000 * 109.47224 * 302.19295 * 29 27 9 49 49 H 1.08998 * 109.46752 * 62.19423 * 29 27 9 50 50 H 1.08998 * 109.46931 * 182.19201 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9776 0.7747 0.8763 7 6 4.1512 0.6681 -1.3033 8 6 5.4980 1.4243 -1.4213 9 7 5.2060 2.7908 -0.9512 10 6 5.8975 3.8995 -1.2813 11 8 5.5654 4.9794 -0.8317 12 7 6.9566 3.8114 -2.1101 13 6 7.7078 5.0167 -2.4693 14 6 7.0251 5.7100 -3.6507 15 6 7.7935 6.9879 -4.0013 16 7 9.2024 6.6434 -4.2359 17 6 9.8267 7.0122 -5.3975 18 1 10.6503 6.4261 -5.7776 19 6 9.4011 8.1397 -6.0864 20 7 8.6521 9.0369 -5.4812 21 14 9.8913 8.3834 -7.8723 22 1 8.8705 7.7635 -8.7549 23 1 9.9836 9.8360 -8.1666 24 1 11.2096 7.7444 -8.1155 25 6 9.9288 5.8957 -3.2004 26 6 9.1365 4.6300 -2.8589 27 6 4.0361 2.7435 -0.0620 28 1 3.2391 3.3713 -0.4605 29 6 4.4263 3.2239 1.3372 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.3134 -0.4045 -1.1964 34 1 3.5075 0.8810 -2.1568 35 1 5.8328 1.4434 -2.4584 36 1 6.2518 0.9579 -0.7869 37 1 7.2215 2.9500 -2.4687 38 1 7.7350 5.6953 -1.6167 39 1 7.0197 5.0410 -4.5113 40 1 6.0003 5.9642 -3.3805 41 1 7.7231 7.6950 -3.1746 42 1 7.3711 7.4327 -4.9022 43 1 8.3550 9.8250 -5.9625 44 1 10.0324 6.5137 -2.3086 45 1 10.9153 5.6199 -3.5732 46 1 9.6142 4.1156 -2.0250 47 1 9.1111 3.9712 -3.7269 48 1 5.2356 2.6033 1.7220 49 1 4.7568 4.2613 1.2861 50 1 3.5645 3.1494 2.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786753323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:17 Heat of formation + Delta-G solvation = -87.333816 kcal Electronic energy + Delta-G solvation = -30478.962792 eV Core-core repulsion = 26314.099022 eV Total energy + Delta-G solvation = -4164.863770 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29310 -40.14005 -38.32715 -37.09961 -36.66952 -34.39970 -32.70531 -31.80522 -31.43137 -29.94526 -29.31356 -28.36976 -26.52892 -25.04005 -23.34729 -22.91753 -22.17867 -21.73877 -20.62860 -19.68452 -19.22370 -18.41260 -17.67940 -17.19733 -16.78527 -16.58736 -16.08753 -15.58689 -14.87951 -14.61252 -14.45507 -14.28807 -13.93448 -13.82121 -13.60622 -13.45724 -13.32537 -13.11583 -12.94929 -12.83383 -12.53244 -12.36691 -12.31841 -12.16512 -11.86796 -11.45081 -11.41275 -11.24877 -11.14989 -11.08369 -10.87150 -10.76542 -10.71933 -10.34406 -10.19061 -10.05148 -9.89962 -9.71918 -9.51286 -8.86589 -8.53415 -8.33661 -6.66000 -5.75268 -3.18082 1.75608 2.09796 2.71069 3.38276 3.39963 3.46484 3.47995 3.78867 3.96864 4.13502 4.32045 4.51906 4.63544 4.68849 4.74195 4.77197 4.80601 5.10283 5.13881 5.19897 5.26781 5.33061 5.36117 5.43118 5.49406 5.50616 5.58663 5.69218 5.87036 5.88010 5.92074 6.09074 6.12934 6.23398 6.27673 6.42651 6.50304 6.65043 6.68996 6.82566 6.95355 7.00206 7.14186 7.30323 7.43720 7.72967 7.82661 8.11431 8.48077 8.78955 9.24024 9.87569 10.44202 11.33141 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.002184 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.370130 B =12818.599677 C =13074.245629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.496 6.496 5 C -0.095 4.095 6 H 0.125 0.875 7 C -0.117 4.117 8 C 0.099 3.901 9 N -0.639 5.639 10 C 0.723 3.277 11 O -0.579 6.579 12 N -0.737 5.737 13 C 0.169 3.831 14 C -0.147 4.147 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.149 3.851 26 C -0.138 4.138 27 C 0.166 3.834 28 H 0.094 0.906 29 C -0.162 4.162 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.389 0.611 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.089 0.911 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.080 0.920 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 -23.628 12.259 29.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.382 6.382 5 C -0.114 4.114 6 H 0.143 0.857 7 C -0.155 4.155 8 C -0.024 4.024 9 N -0.379 5.379 10 C 0.425 3.575 11 O -0.456 6.456 12 N -0.391 5.391 13 C 0.065 3.935 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.022 3.978 26 C -0.178 4.178 27 C 0.061 3.939 28 H 0.112 0.888 29 C -0.220 4.220 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.222 0.778 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.107 0.893 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.098 -22.232 12.489 28.225 hybrid contribution -0.001 -0.330 -1.090 1.139 sum -12.099 -22.562 11.399 28.024 Atomic orbital electron populations 1.23312 0.75972 1.03842 1.02805 1.86487 1.23654 1.33099 1.84094 1.23294 0.91413 0.81520 0.72444 1.90720 1.66844 1.36229 1.44404 1.22127 0.87961 0.98863 1.02471 0.85679 1.22765 0.96336 1.00763 0.95660 1.22275 0.96912 0.82680 1.00544 1.47628 1.32655 1.06171 1.51462 1.15441 0.79923 0.82575 0.79604 1.90939 1.70035 1.25845 1.58791 1.45543 1.31414 1.11743 1.50355 1.20924 0.90015 0.84538 0.98013 1.22578 0.99261 1.00363 0.96505 1.20767 0.83163 0.90635 1.00721 1.44118 1.06861 1.64223 1.16347 1.19178 1.15558 1.05464 0.98123 0.91626 1.25057 1.00558 0.95011 0.99093 1.70040 1.39589 1.09843 1.34995 0.86290 0.78215 0.76897 0.85344 1.21499 1.21792 1.20462 1.20835 0.94295 0.90466 0.92239 1.22340 0.94682 1.00622 1.00138 1.21165 0.88264 0.92990 0.91438 0.88793 1.22162 1.01327 1.03793 0.94711 0.91746 0.91712 0.87914 0.88293 0.89872 0.90177 0.90916 0.77772 0.90037 0.92866 0.92814 0.96109 0.89281 0.93583 0.96160 0.92351 0.92685 0.91959 0.92499 0.90132 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.75 10.56 -39.24 -0.41 -3.16 16 3 C 0.47 4.40 7.27 36.01 0.26 4.67 16 4 O -0.50 -6.29 15.19 -18.75 -0.28 -6.58 16 5 C -0.09 -0.72 2.97 -89.94 -0.27 -0.99 16 6 H 0.13 0.67 7.85 -51.93 -0.41 0.27 16 7 C -0.12 -0.70 6.53 -24.58 -0.16 -0.86 16 8 C 0.10 0.73 6.57 -2.53 -0.02 0.71 16 9 N -0.64 -7.59 3.07 -168.69 -0.52 -8.11 16 10 C 0.72 11.55 8.25 -86.92 -0.72 10.83 16 11 O -0.58 -11.81 15.05 5.28 0.08 -11.73 16 12 N -0.74 -10.80 5.04 -58.63 -0.30 -11.09 16 13 C 0.17 3.01 2.42 -67.89 -0.16 2.85 16 14 C -0.15 -3.02 5.65 -26.61 -0.15 -3.17 16 15 C 0.17 4.31 5.31 -3.71 -0.02 4.29 16 16 N -0.59 -14.93 3.00 -172.33 -0.52 -15.44 16 17 C -0.25 -6.96 9.58 -15.06 -0.14 -7.11 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 20 N -0.90 -26.62 11.19 55.49 0.62 -26.00 16 21 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.15 3.08 6.52 -3.72 -0.02 3.05 16 26 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 27 C 0.17 1.87 2.87 -66.95 -0.19 1.68 16 28 H 0.09 1.34 6.84 -51.93 -0.36 0.98 16 29 C -0.16 -1.78 9.09 37.16 0.34 -1.44 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.56 8.04 -51.93 -0.42 0.15 16 35 H 0.08 0.54 7.30 -51.93 -0.38 0.16 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.39 4.50 7.08 -40.82 -0.29 4.21 16 38 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.08 1.14 6.90 -51.93 -0.36 0.78 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -34.94 395.62 -9.19 -44.12 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.37 Total: 1.95 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -0.42 Total: 13.28 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.71 Total: -60.65 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.62 Total: -21.47 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.94 -9.19 -44.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786753323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.210 kcal (2) G-P(sol) polarization free energy of solvation -34.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds