Wall clock time and date at job start Tue Mar 31 2020 23:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34222 * 117.00174 * 2 1 4 4 O 1.20825 * 120.00196 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99982 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.63859 * 300.69349 * 5 3 2 7 7 C 1.55152 * 110.87321 * 63.94871 * 5 3 2 8 8 C 1.54913 * 101.58304 * 153.93699 * 7 5 3 9 9 N 1.47425 * 104.82938 * 322.98620 * 8 7 5 10 10 C 1.34774 * 125.64666 * 204.08986 * 9 8 7 11 11 O 1.21596 * 119.99776 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00316 * 0.04779 * 10 9 8 13 13 C 1.46492 * 120.00005 * 179.97438 * 12 10 9 14 14 C 1.53048 * 109.46326 * 275.06459 * 13 12 10 15 15 C 1.53183 * 109.31735 * 178.61790 * 14 13 12 16 16 N 1.46928 * 108.77750 * 54.62965 * 15 14 13 17 17 C 1.36943 * 120.62569 * 126.40932 * 16 15 14 18 18 H 1.08001 * 119.99819 * 207.66508 * 17 16 15 19 19 C 1.38807 * 119.99890 * 27.67751 * 17 16 15 20 20 N 1.31614 * 120.00258 * 17.35506 * 19 17 16 21 21 Si 1.86797 * 119.99838 * 197.36276 * 19 17 16 22 22 H 1.48503 * 109.47391 * 89.99903 * 21 19 17 23 23 H 1.48500 * 109.47447 * 209.99614 * 21 19 17 24 24 H 1.48503 * 109.47358 * 329.99624 * 21 19 17 25 25 C 1.46922 * 118.74214 * 306.40149 * 16 15 14 26 26 C 1.53048 * 109.46101 * 155.00065 * 13 12 10 27 27 C 1.47026 * 108.70359 * 24.12880 * 9 8 7 28 28 H 1.08992 * 110.01079 * 239.44705 * 27 9 8 29 29 C 1.53004 * 109.88035 * 118.35525 * 27 9 8 30 30 H 1.09004 * 109.47336 * 300.00060 * 1 2 3 31 31 H 1.09004 * 109.47497 * 60.00297 * 1 2 3 32 32 H 1.09002 * 109.47456 * 180.02562 * 1 2 3 33 33 H 1.09004 * 111.00290 * 272.00887 * 7 5 3 34 34 H 1.08997 * 111.00899 * 35.85710 * 7 5 3 35 35 H 1.08999 * 110.36556 * 204.15304 * 8 7 5 36 36 H 1.08996 * 110.36823 * 81.82441 * 8 7 5 37 37 H 0.97001 * 119.99600 * 359.97438 * 12 10 9 38 38 H 1.09003 * 109.46318 * 35.02634 * 13 12 10 39 39 H 1.09007 * 109.49492 * 298.57086 * 14 13 12 40 40 H 1.08996 * 109.49331 * 58.66263 * 14 13 12 41 41 H 1.09008 * 109.58621 * 294.84849 * 15 14 13 42 42 H 1.08995 * 109.58890 * 174.42583 * 15 14 13 43 43 H 0.97003 * 120.00206 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.58075 * 293.81400 * 25 16 15 45 45 H 1.09005 * 109.58424 * 173.39316 * 25 16 15 46 46 H 1.09001 * 109.49035 * 301.33478 * 26 13 12 47 47 H 1.08995 * 109.49589 * 61.42646 * 26 13 12 48 48 H 1.09000 * 109.47224 * 302.19295 * 29 27 9 49 49 H 1.08998 * 109.46752 * 62.19423 * 29 27 9 50 50 H 1.08998 * 109.46931 * 182.19201 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 -0.0006 6 1 3.9776 0.7747 0.8763 7 6 4.1512 0.6681 -1.3033 8 6 5.4980 1.4243 -1.4213 9 7 5.2060 2.7908 -0.9512 10 6 5.8975 3.8995 -1.2813 11 8 5.5654 4.9794 -0.8317 12 7 6.9566 3.8114 -2.1101 13 6 7.7078 5.0167 -2.4693 14 6 7.0251 5.7100 -3.6507 15 6 7.7935 6.9879 -4.0013 16 7 9.2024 6.6434 -4.2359 17 6 9.8267 7.0122 -5.3975 18 1 10.6503 6.4261 -5.7776 19 6 9.4011 8.1397 -6.0864 20 7 8.6521 9.0369 -5.4812 21 14 9.8913 8.3834 -7.8723 22 1 8.8705 7.7635 -8.7549 23 1 9.9836 9.8360 -8.1666 24 1 11.2096 7.7444 -8.1155 25 6 9.9288 5.8957 -3.2004 26 6 9.1365 4.6300 -2.8589 27 6 4.0361 2.7435 -0.0620 28 1 3.2391 3.3713 -0.4605 29 6 4.4263 3.2239 1.3372 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.3134 -0.4045 -1.1964 34 1 3.5075 0.8810 -2.1568 35 1 5.8328 1.4434 -2.4584 36 1 6.2518 0.9579 -0.7869 37 1 7.2215 2.9500 -2.4687 38 1 7.7350 5.6953 -1.6167 39 1 7.0197 5.0410 -4.5113 40 1 6.0003 5.9642 -3.3805 41 1 7.7231 7.6950 -3.1746 42 1 7.3711 7.4327 -4.9022 43 1 8.3550 9.8250 -5.9625 44 1 10.0324 6.5137 -2.3086 45 1 10.9153 5.6199 -3.5732 46 1 9.6142 4.1156 -2.0250 47 1 9.1111 3.9712 -3.7269 48 1 5.2356 2.6033 1.7220 49 1 4.7568 4.2613 1.2861 50 1 3.5645 3.1494 2.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786753323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:16 Heat of formation + Delta-G solvation = -110.690910 kcal Electronic energy + Delta-G solvation = -30479.975631 eV Core-core repulsion = 26314.099022 eV Total energy + Delta-G solvation = -4165.876609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.08069 -41.18615 -39.54561 -38.42704 -37.48504 -36.01298 -34.16771 -33.03198 -32.36302 -31.66960 -30.92883 -29.01030 -27.24480 -26.86261 -24.56826 -23.90464 -23.53826 -23.20754 -21.47240 -21.16941 -20.42649 -19.42182 -18.72859 -18.43424 -17.90388 -17.33210 -17.27825 -16.80105 -16.59660 -15.89293 -15.59761 -15.35074 -15.33826 -15.01901 -14.77628 -14.64876 -14.47294 -14.33018 -14.11129 -13.99521 -13.78918 -13.40266 -13.18754 -13.07891 -13.01670 -12.84971 -12.63287 -12.61079 -12.57866 -12.12916 -12.07456 -12.00143 -11.89356 -11.85060 -11.80610 -11.53696 -11.49810 -11.39939 -11.14487 -10.58172 -10.13701 -9.52928 -8.71970 -7.86619 -5.32855 1.05695 1.31572 1.47829 1.49450 1.58485 1.81998 2.15382 2.52115 2.95634 3.21492 3.29736 3.39576 3.67100 3.71536 3.88885 4.04541 4.10287 4.15159 4.20348 4.30596 4.32166 4.33142 4.35455 4.48213 4.53078 4.65744 4.67285 4.68321 4.72660 4.80742 4.84703 4.95848 4.98822 5.04397 5.08148 5.10511 5.13721 5.20511 5.29095 5.32641 5.39022 5.46449 5.60865 5.64788 5.69598 6.04145 6.38813 6.62807 7.01500 7.13374 7.59313 7.84766 8.37725 9.20498 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.002184 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.370130 B =12818.599677 C =13074.245629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.083 4.083 6 H 0.160 0.840 7 C -0.107 4.107 8 C 0.091 3.909 9 N -0.635 5.635 10 C 0.716 3.284 11 O -0.634 6.634 12 N -0.721 5.721 13 C 0.182 3.818 14 C -0.130 4.130 15 C 0.183 3.817 16 N -0.609 5.609 17 C -0.258 4.258 18 H 0.077 0.923 19 C -0.058 4.058 20 N -0.940 5.940 21 Si 0.970 3.030 22 H -0.287 1.287 23 H -0.299 1.299 24 H -0.262 1.262 25 C 0.141 3.859 26 C -0.118 4.118 27 C 0.159 3.841 28 H 0.053 0.947 29 C -0.155 4.155 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.410 0.590 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.038 0.962 41 H -0.013 1.013 42 H 0.054 0.946 43 H 0.248 0.752 44 H 0.011 0.989 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.040 0.960 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 -28.526 12.257 32.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.317 3.683 4 O -0.429 6.429 5 C -0.102 4.102 6 H 0.178 0.822 7 C -0.145 4.145 8 C -0.030 4.030 9 N -0.373 5.373 10 C 0.418 3.582 11 O -0.515 6.515 12 N -0.376 5.376 13 C 0.076 3.924 14 C -0.170 4.170 15 C 0.056 3.944 16 N -0.333 5.333 17 C -0.388 4.388 18 H 0.094 0.906 19 C -0.253 4.253 20 N -0.586 5.586 21 Si 0.799 3.201 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.187 1.187 25 C 0.015 3.985 26 C -0.158 4.158 27 C 0.055 3.945 28 H 0.071 0.929 29 C -0.213 4.213 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.247 0.753 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.005 0.995 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.029 0.971 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.956 -27.263 12.492 31.928 hybrid contribution -0.420 1.162 -1.016 1.599 sum -11.376 -26.102 11.476 30.699 Atomic orbital electron populations 1.23573 0.74807 1.05891 1.02348 1.86480 1.24783 1.31894 1.83484 1.23646 0.92094 0.81338 0.71198 1.90720 1.67889 1.37741 1.46552 1.22113 0.86861 0.96222 1.05053 0.82227 1.22831 0.94922 1.02695 0.94004 1.22702 0.98555 0.79950 1.01822 1.47589 1.31810 1.07054 1.50855 1.15642 0.80204 0.82892 0.79499 1.90913 1.71443 1.28508 1.60618 1.45080 1.30874 1.11514 1.50130 1.20514 0.91072 0.85290 0.95501 1.22315 0.97939 0.98631 0.98127 1.20450 0.84191 0.91946 0.97765 1.44364 1.07076 1.64654 1.17157 1.19595 1.15292 1.05090 0.98861 0.90579 1.25902 1.01232 0.95033 1.03126 1.70221 1.41500 1.10427 1.36478 0.85215 0.78468 0.76206 0.80256 1.21347 1.22608 1.18673 1.21061 0.95256 0.91502 0.90670 1.22126 0.92818 0.98700 1.02148 1.21153 0.87065 0.95277 0.91004 0.92851 1.22074 1.02375 1.01746 0.95090 0.92073 0.92443 0.84572 0.84275 0.90974 0.89046 0.87782 0.75319 0.92831 0.92030 0.94363 0.99497 0.92744 0.94264 0.97107 0.91080 0.88856 0.90438 0.90224 0.94098 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -4.55 10.56 -51.34 -0.54 -5.09 16 3 C 0.47 8.19 7.27 71.24 0.52 8.71 16 4 O -0.54 -14.01 15.19 21.97 0.33 -13.67 16 5 C -0.08 -1.04 2.97 -10.35 -0.03 -1.07 16 6 H 0.16 0.95 7.85 -2.39 -0.02 0.93 16 7 C -0.11 -0.84 6.53 31.99 0.21 -0.63 16 8 C 0.09 0.96 6.57 86.86 0.57 1.53 16 9 N -0.63 -14.15 3.07 -805.86 -2.47 -16.62 16 10 C 0.72 22.71 8.25 179.06 1.48 24.18 16 11 O -0.63 -27.17 15.05 -4.02 -0.06 -27.23 16 12 N -0.72 -19.84 5.04 -457.66 -2.31 -22.14 16 13 C 0.18 6.38 2.42 45.03 0.11 6.49 16 14 C -0.13 -5.47 5.65 30.67 0.17 -5.29 16 15 C 0.18 9.56 5.31 86.36 0.46 10.02 16 16 N -0.61 -31.03 3.00 -699.12 -2.09 -33.12 16 17 C -0.26 -14.19 9.58 84.03 0.81 -13.39 16 18 H 0.08 3.96 7.89 -2.91 -0.02 3.94 16 19 C -0.06 -3.31 4.91 84.86 0.42 -2.89 16 20 N -0.94 -57.91 11.19 21.65 0.24 -57.67 16 21 Si 0.97 45.43 29.59 68.60 2.03 47.46 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 25 C 0.14 5.67 6.52 86.36 0.56 6.24 16 26 C -0.12 -3.62 5.55 30.67 0.17 -3.45 16 27 C 0.16 3.52 2.87 45.34 0.13 3.65 16 28 H 0.05 1.63 6.84 -2.39 -0.02 1.61 16 29 C -0.15 -3.38 9.09 71.98 0.65 -2.73 16 30 H 0.06 0.62 8.13 -2.39 -0.02 0.61 16 31 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 32 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.14 0.09 8.14 -2.38 -0.02 0.07 16 34 H 0.07 0.77 8.04 -2.39 -0.02 0.75 16 35 H 0.09 0.81 7.30 -2.39 -0.02 0.79 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.41 7.93 7.08 -92.71 -0.66 7.27 16 38 H 0.05 2.22 7.58 -2.39 -0.02 2.21 16 39 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 42 H 0.05 3.20 6.04 -2.39 -0.01 3.18 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.07 2.67 7.93 -2.38 -0.02 2.65 16 46 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.04 1.22 6.90 -2.39 -0.02 1.21 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -83.23 395.62 2.83 -80.40 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.28 Total: 14.87 kcal Atomic # 6 Polarization: 25.40 SS G_CDS: 7.42 Total: 32.82 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -6.63 Total: -129.55 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -0.27 Total: -46.00 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -83.23 2.83 -80.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786753323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.289 kcal (2) G-P(sol) polarization free energy of solvation -83.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds