Wall clock time and date at job start Tue Mar 31 2020 23:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.52718 * 2 1 4 4 C 1.53039 * 109.49585 * 239.91631 * 2 1 3 5 5 C 1.53048 * 109.52643 * 178.67659 * 4 2 1 6 6 C 1.53197 * 109.31074 * 61.37386 * 5 4 2 7 7 N 1.46927 * 108.77529 * 305.36502 * 6 5 4 8 8 C 1.34777 * 120.63068 * 233.59187 * 7 6 5 9 9 O 1.21349 * 119.99971 * 174.94646 * 8 7 6 10 10 C 1.49446 * 119.99917 * 354.94186 * 8 7 6 11 11 O 1.21351 * 120.00405 * 275.42636 * 10 8 7 12 12 N 1.34780 * 120.00098 * 95.42642 * 10 8 7 13 13 C 1.46501 * 119.99831 * 5.02540 * 12 10 8 14 14 C 1.46493 * 120.00242 * 185.02414 * 12 10 8 15 15 H 1.09004 * 110.88804 * 357.58040 * 14 12 10 16 16 C 1.54917 * 111.00275 * 121.45382 * 14 12 10 17 17 N 1.47430 * 104.83125 * 155.08682 * 16 14 12 18 18 C 1.36931 * 125.64747 * 155.91186 * 17 16 14 19 19 H 1.08002 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.38819 * 120.00042 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99335 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00118 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47227 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47182 * 119.99683 * 22 20 18 25 25 H 1.48497 * 109.47283 * 240.00101 * 22 20 18 26 26 C 1.47019 * 108.70051 * 335.86838 * 17 16 14 27 27 C 1.54324 * 107.27648 * 1.06525 * 26 17 16 28 28 H 1.08999 * 110.71870 * 263.83032 * 27 26 17 29 29 O 1.42897 * 110.72599 * 140.55204 * 27 26 17 30 30 C 1.46929 * 118.73932 * 53.60837 * 7 6 5 31 31 H 1.09002 * 109.46888 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46946 * 300.08712 * 1 2 3 33 33 H 1.09001 * 109.46769 * 60.08525 * 1 2 3 34 34 H 1.09000 * 109.46261 * 58.66484 * 4 2 1 35 35 H 1.08994 * 109.46350 * 298.69120 * 4 2 1 36 36 H 1.09000 * 109.49384 * 181.32363 * 5 4 2 37 37 H 1.08991 * 109.49766 * 301.42350 * 5 4 2 38 38 H 1.08995 * 109.58917 * 65.15199 * 6 5 4 39 39 H 1.09001 * 109.58698 * 185.58096 * 6 5 4 40 40 H 1.09003 * 109.47024 * 84.77420 * 13 12 10 41 41 H 1.09002 * 109.47259 * 204.77616 * 13 12 10 42 42 H 1.09001 * 109.47114 * 324.77679 * 13 12 10 43 43 H 1.09000 * 110.36579 * 273.92323 * 16 14 12 44 44 H 1.09000 * 110.36452 * 36.13829 * 16 14 12 45 45 H 0.97005 * 119.99209 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.87891 * 120.48210 * 26 17 16 47 47 H 1.08995 * 109.88605 * 241.48540 * 26 17 16 48 48 H 0.96700 * 113.99961 * 66.47282 * 29 27 26 49 49 H 1.08999 * 109.58463 * 66.18080 * 30 7 6 50 50 H 1.08998 * 109.58652 * 186.46101 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6948 -1.2658 6 6 4.1053 -1.4265 -0.0306 7 7 3.5044 -0.8291 1.1698 8 6 4.2807 -0.3862 2.1786 9 8 3.7794 0.1877 3.1230 10 6 5.7588 -0.6020 2.1341 11 8 6.2309 -1.6506 2.5215 12 7 6.5677 0.3681 1.6637 13 6 6.0109 1.6732 1.2992 14 6 8.0035 0.1174 1.5168 15 1 8.2617 -0.8813 1.8692 16 6 8.4557 0.3225 0.0494 17 7 9.8908 0.6481 0.1387 18 6 10.8146 0.4625 -0.8549 19 1 10.5111 0.0439 -1.8031 20 6 12.1412 0.8125 -0.6434 21 7 12.5108 1.3231 0.5120 22 14 13.4015 0.5587 -1.9986 23 1 12.7358 -0.0254 -3.1906 24 1 14.0081 1.8647 -2.3613 25 1 14.4624 -0.3644 -1.5214 26 6 10.1656 1.2059 1.4709 27 6 8.8354 1.2003 2.2534 28 1 8.3462 2.1723 2.1891 29 8 9.0521 0.8309 3.6166 30 6 2.0410 -0.7240 1.2496 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5152 0.8892 33 1 -0.3633 0.5125 -0.8908 34 1 1.6582 -0.2246 -2.1389 35 1 1.6969 -1.7573 -1.2351 36 1 3.9336 -1.1894 -2.1669 37 1 3.9157 0.3391 -1.2538 38 1 3.8378 -2.4816 -0.0866 39 1 5.1896 -1.3242 0.0141 40 1 5.9433 2.3004 2.1881 41 1 6.6585 2.1523 0.5649 42 1 5.0166 1.5380 0.8735 43 1 8.3094 -0.5928 -0.5241 44 1 7.9057 1.1463 -0.4054 45 1 13.4378 1.5680 0.6596 46 1 10.9015 0.5889 1.9866 47 1 10.5383 2.2257 1.3762 48 1 9.5675 1.4748 4.1214 49 1 1.6052 -1.7219 1.2980 50 1 1.7632 -0.1604 2.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047555263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:45 Heat of formation + Delta-G solvation = -82.737018 kcal Electronic energy + Delta-G solvation = -31567.131496 eV Core-core repulsion = 27402.467059 eV Total energy + Delta-G solvation = -4164.664437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07829 -39.40174 -38.10312 -37.48790 -35.32718 -34.86425 -34.17513 -32.21311 -31.95629 -28.90680 -27.70677 -27.46344 -26.83294 -26.17968 -24.63681 -23.16324 -22.65690 -20.63254 -20.48726 -19.85280 -18.90697 -17.91605 -17.32369 -16.99050 -16.74465 -16.26731 -15.62325 -15.18553 -14.98914 -14.86305 -14.70620 -14.51774 -14.13175 -14.06779 -13.75328 -13.26871 -13.23504 -13.13243 -12.96501 -12.74743 -12.52090 -12.43188 -12.22315 -12.17339 -12.06971 -11.53314 -11.51585 -11.39927 -11.30390 -11.19865 -11.04732 -10.91758 -10.85867 -10.76465 -10.16989 -10.01045 -9.89607 -9.57365 -9.28060 -9.02276 -8.79535 -8.54113 -6.98784 -5.82092 -3.17923 2.03761 2.10156 2.58263 3.21083 3.34761 3.40289 3.42800 4.05860 4.31620 4.39668 4.42400 4.45975 4.61520 4.64414 4.87231 5.00228 5.02772 5.10906 5.14657 5.19597 5.30734 5.34040 5.36485 5.39688 5.44793 5.46260 5.54508 5.57658 5.62156 5.67651 5.72165 5.75061 5.77324 5.79244 5.93872 6.00113 6.04188 6.12539 6.33605 6.43553 6.69397 6.89688 7.24241 7.30858 7.42673 7.66222 7.68476 7.90272 8.10953 8.17438 9.07837 9.68105 10.30418 11.29207 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.003016 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.945744 B = 9280.152362 C =10351.448176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.104 3.896 7 N -0.598 5.598 8 C 0.522 3.478 9 O -0.515 6.515 10 C 0.516 3.484 11 O -0.509 6.509 12 N -0.583 5.583 13 C 0.071 3.929 14 C 0.130 3.870 15 H 0.118 0.882 16 C 0.133 3.867 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.082 0.918 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.916 3.084 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.152 3.848 27 C 0.066 3.934 28 H 0.057 0.943 29 O -0.560 6.560 30 C 0.114 3.886 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.254 0.746 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.375 0.625 49 H 0.071 0.929 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.213 -0.295 -2.772 22.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.173 4.173 6 C -0.019 4.019 7 N -0.333 5.333 8 C 0.304 3.696 9 O -0.389 6.389 10 C 0.298 3.702 11 O -0.383 6.383 12 N -0.317 5.317 13 C -0.072 4.072 14 C 0.026 3.974 15 H 0.136 0.864 16 C 0.006 3.994 17 N -0.326 5.326 18 C -0.360 4.360 19 H 0.100 0.900 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.746 3.254 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.027 3.973 27 C 0.006 3.994 28 H 0.075 0.925 29 O -0.364 6.364 30 C -0.008 4.008 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.222 0.778 49 H 0.090 0.910 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.329 -1.044 -2.249 22.466 hybrid contribution 1.094 0.491 -0.488 1.294 sum -21.235 -0.553 -2.737 21.418 Atomic orbital electron populations 1.21760 0.94153 1.02142 1.02207 1.21514 0.96106 1.00274 0.94704 0.90501 1.21612 0.95123 1.00957 0.97602 1.21928 0.96078 1.01737 0.97526 1.21861 0.98668 0.97648 0.83696 1.48106 1.07005 1.60450 1.17736 1.20401 0.87889 0.78360 0.82920 1.90776 1.74193 1.40541 1.33427 1.20073 0.87013 0.84584 0.78546 1.90820 1.75257 1.26320 1.45875 1.47773 1.08339 1.13144 1.62421 1.21906 0.99114 0.84594 1.01598 1.22575 0.76255 1.01377 0.97159 0.86436 1.21768 0.87277 0.98450 0.91900 1.44235 1.01970 1.73791 1.12560 1.19099 0.87727 1.36398 0.92762 0.90027 1.24838 0.97148 1.00829 0.97410 1.69944 1.16543 1.47903 1.22369 0.85994 0.81386 0.77374 0.80669 1.20396 1.21683 1.21617 1.21861 0.90948 0.99520 0.85013 1.23531 0.97873 0.95695 0.82332 0.92474 1.86505 1.76928 1.50743 1.22267 1.21776 0.78305 1.01256 0.99432 0.92410 0.92294 0.92169 0.91319 0.91561 0.89975 0.91053 0.90490 0.89579 0.91850 0.89184 0.91652 0.93200 0.95554 0.93596 0.92049 0.93218 0.77813 0.91033 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.20 37.16 0.34 -0.43 16 2 C -0.11 -0.73 2.87 -90.50 -0.26 -0.99 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -0.71 5.17 -26.69 -0.14 -0.84 16 5 C -0.13 -0.97 6.08 -26.60 -0.16 -1.13 16 6 C 0.10 0.99 6.32 -3.71 -0.02 0.97 16 7 N -0.60 -6.77 2.97 -173.27 -0.51 -7.28 16 8 C 0.52 7.86 5.69 -11.59 -0.07 7.79 16 9 O -0.52 -8.95 16.51 5.50 0.09 -8.85 16 10 C 0.52 8.85 5.47 -11.59 -0.06 8.79 16 11 O -0.51 -10.43 16.49 5.50 0.09 -10.34 16 12 N -0.58 -9.31 2.91 -171.98 -0.50 -9.81 16 13 C 0.07 0.88 8.85 59.85 0.53 1.41 16 14 C 0.13 2.44 3.17 -65.78 -0.21 2.23 16 15 H 0.12 2.55 7.02 -51.93 -0.36 2.19 16 16 C 0.13 2.61 6.79 -2.52 -0.02 2.59 16 17 N -0.60 -14.61 3.39 -170.06 -0.58 -15.19 16 18 C -0.23 -6.20 10.28 -15.06 -0.15 -6.36 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -26.19 10.31 55.49 0.57 -25.62 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.15 3.56 5.15 -3.07 -0.02 3.55 16 27 C 0.07 1.26 3.89 -24.90 -0.10 1.17 16 28 H 0.06 0.98 7.08 -51.93 -0.37 0.62 16 29 O -0.56 -10.61 13.39 -35.23 -0.47 -11.08 16 30 C 0.11 1.02 5.73 -3.71 -0.02 1.00 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.97 6.37 -51.93 -0.33 0.64 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.07 6.33 -51.93 -0.33 0.74 16 42 H 0.06 0.70 6.99 -51.93 -0.36 0.34 16 43 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.03 0.48 6.33 -51.93 -0.33 0.15 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.06 1.64 7.30 -51.92 -0.38 1.26 16 47 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 48 H 0.38 5.46 9.12 45.56 0.42 5.88 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.97 7.00 -51.93 -0.36 0.60 16 LS Contribution 391.86 15.07 5.91 5.91 Total: -1.00 -34.04 391.86 -8.30 -42.34 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.42 Total: 4.00 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: -0.45 Total: 19.50 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -1.02 Total: -57.90 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.29 Total: -30.28 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.04 -8.30 -42.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047555263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.398 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds