Wall clock time and date at job start Tue Mar 31 2020 23:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.50244 * 2 1 4 4 C 1.53045 * 109.52100 * 120.07862 * 2 1 3 5 5 C 1.53041 * 109.53686 * 181.33022 * 4 2 1 6 6 C 1.53619 * 109.24482 * 298.51039 * 5 4 2 7 7 N 1.46930 * 108.54336 * 54.85520 * 6 5 4 8 8 C 1.34772 * 120.63062 * 126.37121 * 7 6 5 9 9 O 1.21347 * 119.99759 * 184.82825 * 8 7 6 10 10 C 1.49453 * 120.00262 * 4.82368 * 8 7 6 11 11 O 1.21353 * 119.99421 * 84.34711 * 10 8 7 12 12 N 1.34774 * 120.00242 * 264.35212 * 10 8 7 13 13 C 1.46497 * 119.99830 * 5.27825 * 12 10 8 14 14 C 1.46499 * 119.99915 * 185.28161 * 12 10 8 15 15 H 1.09002 * 110.78019 * 3.23488 * 14 12 10 16 16 C 1.54327 * 110.71994 * 126.47933 * 14 12 10 17 17 N 1.47021 * 107.27371 * 140.55731 * 16 14 12 18 18 C 1.36932 * 125.64615 * 181.02382 * 17 16 14 19 19 H 1.08005 * 119.99661 * 174.71492 * 18 17 16 20 20 C 1.38804 * 120.00249 * 354.71320 * 18 17 16 21 21 N 1.31620 * 120.00415 * 5.54608 * 20 18 17 22 22 Si 1.86802 * 119.99940 * 185.54875 * 20 18 17 23 23 H 1.48506 * 109.46942 * 94.99752 * 22 20 18 24 24 H 1.48504 * 109.47372 * 214.99211 * 22 20 18 25 25 H 1.48497 * 109.47441 * 334.99697 * 22 20 18 26 26 C 1.47426 * 108.70089 * 1.05473 * 17 16 14 27 27 C 1.54910 * 104.83429 * 335.87119 * 26 17 16 28 28 H 1.08991 * 111.00687 * 278.93922 * 27 26 17 29 29 O 1.42908 * 111.00383 * 155.12010 * 27 26 17 30 30 C 1.46925 * 118.73761 * 306.09514 * 7 6 5 31 31 H 1.09004 * 109.47664 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47590 * 300.07089 * 1 2 3 33 33 H 1.09000 * 109.47111 * 60.06898 * 1 2 3 34 34 H 1.08998 * 109.46169 * 301.34707 * 4 2 1 35 35 H 1.08994 * 109.46406 * 61.30997 * 4 2 1 36 36 H 1.09005 * 109.50002 * 58.58645 * 5 4 2 37 37 H 1.09001 * 109.49583 * 178.64633 * 5 4 2 38 38 H 1.08997 * 109.73856 * 295.12158 * 6 5 4 39 39 H 1.08999 * 109.67003 * 174.55055 * 6 5 4 40 40 H 1.09003 * 109.47385 * 265.76431 * 13 12 10 41 41 H 1.08998 * 109.47585 * 25.76964 * 13 12 10 42 42 H 1.09001 * 109.47448 * 145.76510 * 13 12 10 43 43 H 1.08993 * 109.88083 * 21.13272 * 16 14 12 44 44 H 1.09001 * 109.87684 * 259.97040 * 16 14 12 45 45 H 0.96995 * 120.00533 * 179.97438 * 21 20 18 46 46 H 1.09003 * 110.36695 * 217.03830 * 26 17 16 47 47 H 1.08996 * 110.36732 * 94.71601 * 26 17 16 48 48 H 0.96698 * 113.99264 * 64.58468 * 29 27 26 49 49 H 1.09003 * 109.58923 * 173.64432 * 30 7 6 50 50 H 1.08998 * 109.59000 * 293.93333 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7230 1.2482 5 6 3.5714 -0.6943 1.2655 6 6 4.1056 -1.4308 0.0277 7 7 3.5046 -0.8283 -1.1701 8 6 4.2807 -0.3853 -2.1789 9 8 3.7792 0.1890 -3.1230 10 6 5.7588 -0.6013 -2.1350 11 8 6.2302 -1.6515 -2.5191 12 7 6.5683 0.3702 -1.6688 13 6 5.9939 1.5911 -1.0982 14 6 8.0226 0.2054 -1.7328 15 1 8.2845 -0.7266 -2.2337 16 6 8.6779 1.4093 -2.4418 17 7 9.9216 1.7167 -1.7205 18 6 10.7888 2.7326 -2.0221 19 1 11.6338 2.9300 -1.3791 20 6 10.5819 3.5087 -3.1541 21 7 9.4952 3.3409 -3.8775 22 14 11.8458 4.7913 -3.6511 23 1 12.7744 4.2089 -4.6530 24 1 11.1540 5.9654 -4.2412 25 1 12.6138 5.2191 -2.4543 26 6 10.0807 0.7496 -0.6192 27 6 8.6440 0.2584 -0.3120 28 1 8.1142 0.9712 0.3198 29 8 8.6634 -1.0384 0.2881 30 6 2.0413 -0.7236 -1.2497 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5149 0.8893 33 1 -0.3633 0.5128 -0.8906 34 1 1.6588 -0.2245 2.1389 35 1 1.6977 -1.7572 1.2353 36 1 3.9161 0.3398 1.2535 37 1 3.9343 -1.1882 2.1668 38 1 3.8348 -2.4852 0.0814 39 1 5.1901 -1.3318 -0.0184 40 1 5.9301 2.3580 -1.8702 41 1 4.9962 1.3783 -0.7142 42 1 6.6279 1.9456 -0.2855 43 1 8.0081 2.2685 -2.4087 44 1 8.9035 1.1521 -3.4767 45 1 9.3504 3.8835 -4.6684 46 1 10.5097 1.2381 0.2557 47 1 10.7076 -0.0845 -0.9345 48 1 9.0874 -1.0633 1.1568 49 1 1.7632 -0.1578 -2.1389 50 1 1.6057 -1.7215 -1.3006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047555265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:48 Heat of formation + Delta-G solvation = -81.497654 kcal Electronic energy + Delta-G solvation = -31802.534589 eV Core-core repulsion = 27637.923894 eV Total energy + Delta-G solvation = -4164.610695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.97432 -39.32074 -38.07377 -37.40625 -35.42119 -34.80428 -34.09830 -32.14219 -31.90250 -29.10053 -27.55696 -27.21767 -26.74746 -26.15341 -24.60151 -23.12515 -22.61510 -20.61370 -20.55937 -19.75910 -18.77478 -17.85052 -17.23609 -17.11663 -16.66439 -16.27075 -15.51148 -15.00377 -14.91173 -14.84861 -14.74615 -14.36610 -14.12729 -13.89827 -13.71843 -13.32717 -13.15851 -13.03909 -12.97479 -12.85148 -12.53310 -12.36940 -12.20009 -12.12802 -11.89676 -11.53952 -11.45765 -11.30173 -11.14034 -11.09154 -11.00048 -10.83926 -10.79551 -10.71732 -10.24723 -10.16017 -9.83087 -9.66615 -9.31565 -8.93651 -8.69306 -8.40343 -6.96963 -5.80910 -3.16521 2.16381 2.24836 2.69353 3.33806 3.36729 3.41534 3.43998 4.16873 4.35184 4.38172 4.47407 4.49367 4.54166 4.65080 4.92294 5.06812 5.12572 5.15932 5.22855 5.25068 5.34915 5.36359 5.38809 5.40813 5.50098 5.51492 5.54840 5.57074 5.64174 5.70965 5.75396 5.78737 5.83675 5.96671 6.00750 6.05097 6.15299 6.21361 6.39702 6.55054 6.64846 6.98979 7.25552 7.43278 7.50389 7.68090 7.78329 7.90489 8.04674 8.12686 9.09113 9.69815 10.32786 11.30689 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.003096 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.490467 B = 9041.972632 C = 9619.177706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.134 4.134 6 C 0.104 3.896 7 N -0.600 5.600 8 C 0.521 3.479 9 O -0.510 6.510 10 C 0.516 3.484 11 O -0.513 6.513 12 N -0.577 5.577 13 C 0.074 3.926 14 C 0.120 3.880 15 H 0.110 0.890 16 C 0.174 3.826 17 N -0.600 5.600 18 C -0.235 4.235 19 H 0.081 0.919 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.108 3.892 27 C 0.076 3.924 28 H 0.066 0.934 29 O -0.559 6.559 30 C 0.114 3.886 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.255 0.745 46 H 0.045 0.955 47 H 0.033 0.967 48 H 0.372 0.628 49 H 0.095 0.905 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.993 -7.562 14.156 22.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.172 4.172 6 C -0.018 4.018 7 N -0.336 5.336 8 C 0.304 3.696 9 O -0.384 6.384 10 C 0.298 3.702 11 O -0.388 6.388 12 N -0.310 5.310 13 C -0.069 4.069 14 C 0.017 3.983 15 H 0.128 0.872 16 C 0.049 3.951 17 N -0.329 5.329 18 C -0.363 4.363 19 H 0.099 0.901 20 C -0.201 4.201 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.019 4.019 27 C 0.015 3.985 28 H 0.084 0.916 29 O -0.363 6.363 30 C -0.008 4.008 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.050 0.950 48 H 0.218 0.782 49 H 0.113 0.887 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.293 -7.793 12.685 22.070 hybrid contribution 0.954 0.920 0.198 1.340 sum -15.338 -6.873 12.883 21.177 Atomic orbital electron populations 1.21755 0.94182 1.02087 1.02215 1.21514 0.96084 1.00324 0.94709 0.90466 1.21605 0.95106 1.00914 0.97612 1.21997 0.96102 1.01584 0.97494 1.21931 0.98843 0.97383 0.83682 1.48125 1.06952 1.60573 1.17929 1.20448 0.87945 0.78329 0.82911 1.90792 1.74022 1.40180 1.33383 1.20033 0.86961 0.84417 0.78789 1.90798 1.75326 1.25447 1.47245 1.47710 1.06731 1.17862 1.58664 1.21863 0.97992 0.87199 0.99818 1.22698 0.76925 1.03333 0.95343 0.87178 1.21479 0.87310 0.91650 0.94707 1.44236 1.23699 1.32680 1.32252 1.19041 1.04413 1.06375 1.06433 0.90100 1.24851 0.97860 0.99946 0.97410 1.69923 1.25518 1.42584 1.18447 0.86082 0.80519 0.80572 0.78441 1.21490 1.21674 1.20599 1.22183 0.93771 0.93375 0.92570 1.23462 0.97298 0.83853 0.93878 0.91592 1.86550 1.82481 1.30257 1.37033 1.21759 0.78455 1.01154 0.99426 0.92453 0.92209 0.92262 0.91417 0.91606 0.91151 0.90233 0.90648 0.89354 0.90942 0.91822 0.90065 0.92406 0.92428 0.93430 0.93673 0.94979 0.78223 0.88683 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.15 0.34 -0.52 16 2 C -0.11 -0.80 2.87 -90.50 -0.26 -1.06 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -0.74 5.17 -26.69 -0.14 -0.88 16 5 C -0.13 -0.99 6.10 -26.39 -0.16 -1.15 16 6 C 0.10 1.05 6.35 -3.49 -0.02 1.03 16 7 N -0.60 -7.36 2.96 -173.01 -0.51 -7.88 16 8 C 0.52 8.61 5.63 -11.59 -0.07 8.54 16 9 O -0.51 -9.80 16.51 5.50 0.09 -9.71 16 10 C 0.52 9.58 5.46 -11.59 -0.06 9.52 16 11 O -0.51 -11.01 16.49 5.49 0.09 -10.92 16 12 N -0.58 -10.22 2.89 -172.34 -0.50 -10.72 16 13 C 0.07 1.10 9.08 59.85 0.54 1.64 16 14 C 0.12 2.40 3.08 -66.09 -0.20 2.20 16 15 H 0.11 2.44 7.03 -51.93 -0.37 2.07 16 16 C 0.17 4.16 5.00 -3.06 -0.02 4.15 16 17 N -0.60 -14.76 3.39 -170.08 -0.58 -15.34 16 18 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 19 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 20 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 21 N -0.92 -26.47 10.35 55.49 0.57 -25.90 16 22 Si 0.91 21.66 29.56 -169.99 -5.02 16.63 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.11 2.13 6.97 -2.53 -0.02 2.11 16 27 C 0.08 1.29 3.98 -24.58 -0.10 1.19 16 28 H 0.07 1.04 6.36 -51.93 -0.33 0.71 16 29 O -0.56 -8.49 13.47 -35.23 -0.47 -8.96 16 30 C 0.11 1.12 5.72 -3.71 -0.02 1.10 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.07 6.37 -51.93 -0.33 0.74 16 40 H 0.07 1.18 7.68 -51.93 -0.40 0.78 16 41 H 0.06 0.79 6.83 -51.93 -0.35 0.44 16 42 H 0.08 1.12 6.37 -51.93 -0.33 0.78 16 43 H 0.06 1.47 6.00 -51.93 -0.31 1.16 16 44 H 0.06 1.59 7.37 -51.93 -0.38 1.21 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.37 3.77 9.12 45.56 0.42 4.19 16 49 H 0.09 1.08 7.00 -51.93 -0.36 0.71 16 50 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -34.06 391.29 -8.24 -42.29 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.37 Total: 3.40 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: -0.43 Total: 21.20 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -1.01 Total: -59.83 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.29 Total: -29.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.06 -8.24 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047555265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.205 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds