Wall clock time and date at job start Tue Mar 31 2020 23:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.33070 * 2 1 4 4 C 1.54470 * 110.46797 * 237.69099 * 2 1 3 5 5 C 1.54518 * 104.06293 * 217.14161 * 4 2 1 6 6 H 1.09000 * 110.51047 * 118.64432 * 5 4 2 7 7 C 1.50700 * 110.50895 * 241.21506 * 5 4 2 8 8 O 1.21277 * 120.00272 * 16.47210 * 7 5 4 9 9 N 1.34778 * 119.99768 * 196.46859 * 7 5 4 10 10 C 1.47744 * 121.65278 * 3.01357 * 9 7 5 11 11 C 1.53607 * 108.47553 * 87.79808 * 10 9 7 12 12 C 1.50704 * 109.49382 * 55.02047 * 11 10 9 13 13 O 1.21285 * 120.24407 * 65.68049 * 12 11 10 14 14 N 1.35511 * 119.52059 * 245.65350 * 12 11 10 15 15 C 1.47113 * 118.10826 * 179.97438 * 14 12 11 16 16 C 1.52988 * 109.17300 * 259.43830 * 15 14 12 17 17 N 1.47770 * 108.82388 * 57.75280 * 16 15 14 18 18 C 1.36939 * 121.64774 * 83.02413 * 17 16 15 19 19 H 1.07996 * 119.99923 * 327.20358 * 18 17 16 20 20 C 1.38810 * 119.99926 * 147.20596 * 18 17 16 21 21 N 1.31615 * 120.00289 * 156.07704 * 20 18 17 22 22 Si 1.86808 * 119.99956 * 336.07228 * 20 18 17 23 23 H 1.48497 * 109.46777 * 91.75316 * 22 20 18 24 24 H 1.48501 * 109.47154 * 211.75231 * 22 20 18 25 25 H 1.48498 * 109.46983 * 331.75448 * 22 20 18 26 26 C 1.47738 * 116.70686 * 263.00895 * 17 16 15 27 27 C 1.47764 * 121.65086 * 183.29906 * 9 7 5 28 28 C 1.54479 * 104.05970 * 359.97438 * 5 4 2 29 29 O 1.44425 * 110.37205 * 122.24720 * 2 1 3 30 30 H 1.09003 * 109.47371 * 299.20148 * 1 2 3 31 31 H 1.09004 * 109.47148 * 59.20270 * 1 2 3 32 32 H 1.08996 * 109.47061 * 179.20400 * 1 2 3 33 33 H 1.09002 * 110.50905 * 335.78035 * 4 2 1 34 34 H 1.08996 * 110.51681 * 98.50011 * 4 2 1 35 35 H 1.09000 * 109.58384 * 207.42976 * 10 9 7 36 36 H 1.09000 * 109.58267 * 327.84666 * 10 9 7 37 37 H 1.08996 * 109.50286 * 294.98450 * 11 10 9 38 38 H 1.08997 * 109.40759 * 174.99597 * 11 10 9 39 39 H 0.96995 * 120.94871 * 359.94982 * 14 12 11 40 40 H 1.09001 * 109.52055 * 139.53410 * 15 14 12 41 41 H 1.09002 * 109.57252 * 19.37423 * 15 14 12 42 42 H 1.08996 * 109.58197 * 297.94750 * 16 15 14 43 43 H 1.09005 * 109.68739 * 177.61818 * 16 15 14 44 44 H 0.97004 * 120.00579 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58139 * 14.86651 * 26 17 16 46 46 H 1.09008 * 109.69038 * 254.53931 * 26 17 16 47 47 H 1.08998 * 109.59071 * 69.84046 * 27 9 7 48 48 H 1.09006 * 109.58113 * 190.12479 * 27 9 7 49 49 H 1.09007 * 110.36941 * 265.14908 * 28 5 4 50 50 H 1.09001 * 110.36976 * 142.81453 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2231 5 6 3.3208 -1.5031 -0.6836 6 1 3.2003 -2.5829 -0.7707 7 6 4.5552 -1.0498 -1.4198 8 8 4.5300 -0.0297 -2.0752 9 7 5.6871 -1.7781 -1.3498 10 6 5.7404 -3.0596 -0.6165 11 6 5.3223 -4.1859 -1.5736 12 6 6.1904 -4.1475 -2.8050 13 8 7.3777 -4.3812 -2.7229 14 7 5.6347 -3.8506 -4.0047 15 6 6.5109 -3.8212 -5.1861 16 6 6.8577 -2.3687 -5.5185 17 7 7.5035 -1.7514 -4.3414 18 6 8.8401 -1.9099 -4.0896 19 1 9.3360 -2.8291 -4.3641 20 6 9.5577 -0.8890 -3.4816 21 7 10.6620 -1.1640 -2.8205 22 14 8.9559 0.8755 -3.6016 23 1 8.0851 1.1816 -2.4384 24 1 10.1207 1.7966 -3.6040 25 1 8.1837 1.0506 -4.8579 26 6 6.6359 -0.9544 -3.4498 27 6 6.9378 -1.3313 -1.9974 28 6 3.3886 -1.0834 0.8016 29 8 2.0328 -0.7224 1.1451 30 1 -0.3634 0.5014 0.8971 31 1 -0.3634 0.5262 -0.8828 32 1 -0.3633 -1.0275 -0.0143 33 1 1.3314 -1.4927 -1.5768 34 1 2.3451 -0.0833 -2.0206 35 1 6.7565 -3.2371 -0.2644 36 1 5.0583 -3.0230 0.2330 37 1 4.2793 -4.0516 -1.8601 38 1 5.4413 -5.1478 -1.0750 39 1 4.6862 -3.6631 -4.0824 40 1 5.9961 -4.2756 -6.0327 41 1 7.4258 -4.3752 -4.9760 42 1 5.9468 -1.8226 -5.7637 43 1 7.5409 -2.3393 -6.3673 44 1 11.1637 -0.4506 -2.3959 45 1 5.5902 -1.1679 -3.6712 46 1 6.8315 0.1074 -3.6000 47 1 7.3331 -0.4636 -1.4693 48 1 7.6701 -2.1385 -1.9735 49 1 4.0524 -0.2276 0.9241 50 1 3.7262 -1.9177 1.4165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070976664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:10 Heat of formation + Delta-G solvation = -68.774346 kcal Electronic energy + Delta-G solvation = -33233.184679 eV Core-core repulsion = 29069.125708 eV Total energy + Delta-G solvation = -4164.058971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.69353 -39.38640 -38.38291 -36.14943 -35.63438 -33.85373 -32.51556 -32.00159 -31.59405 -30.66807 -29.55613 -26.94373 -26.15714 -24.90962 -23.72374 -23.38158 -21.94423 -21.17408 -20.22074 -19.89378 -18.79349 -17.61500 -16.73895 -16.58448 -16.38141 -15.98978 -15.74002 -15.55646 -15.16883 -14.93230 -14.70066 -14.23166 -13.98977 -13.75107 -13.47855 -13.28960 -13.15728 -12.80799 -12.73981 -12.52739 -12.43933 -12.24035 -12.18300 -11.96230 -11.82052 -11.65183 -11.46603 -11.40570 -11.07154 -10.91130 -10.75299 -10.59681 -10.49540 -10.29453 -9.99737 -9.96999 -9.51470 -9.38385 -9.19384 -8.76642 -8.36030 -8.25091 -6.73691 -5.89883 -3.24056 2.69822 3.06134 3.24358 3.43950 3.56066 3.62867 3.66687 3.76558 4.29165 4.47542 4.50427 4.62633 4.77764 4.83113 4.89895 5.00782 5.04107 5.05820 5.15889 5.21843 5.30987 5.42797 5.44374 5.46573 5.53407 5.60883 5.66818 5.77136 5.80373 5.81608 5.86858 5.90280 5.98977 6.05339 6.06895 6.17706 6.46220 6.48514 6.55732 6.60164 6.66596 6.88162 7.04899 7.12354 7.70883 8.00129 8.07314 8.34483 8.45601 8.86410 9.03502 9.79995 10.24120 11.26049 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.004669 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.538917 B = 5995.584258 C = 6778.623334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.139 4.139 5 C -0.146 4.146 6 H 0.103 0.897 7 C 0.519 3.481 8 O -0.532 6.532 9 N -0.609 5.609 10 C 0.116 3.884 11 C -0.160 4.160 12 C 0.515 3.485 13 O -0.505 6.505 14 N -0.726 5.726 15 C 0.091 3.909 16 C 0.125 3.875 17 N -0.601 5.601 18 C -0.239 4.239 19 H 0.083 0.917 20 C 0.035 3.965 21 N -0.898 5.898 22 Si 0.867 3.133 23 H -0.284 1.284 24 H -0.306 1.306 25 H -0.278 1.278 26 C 0.140 3.860 27 C 0.095 3.905 28 C 0.062 3.938 29 O -0.370 6.370 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.389 0.611 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.039 0.961 43 H 0.059 0.941 44 H 0.260 0.740 45 H 0.057 0.943 46 H 0.022 0.978 47 H 0.053 0.947 48 H 0.128 0.872 49 H 0.065 0.935 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.898 -4.911 4.664 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 H 0.089 0.911 4 C -0.177 4.177 5 C -0.168 4.168 6 H 0.121 0.879 7 C 0.306 3.694 8 O -0.409 6.409 9 N -0.343 5.343 10 C -0.008 4.008 11 C -0.201 4.201 12 C 0.300 3.700 13 O -0.378 6.378 14 N -0.378 5.378 15 C -0.035 4.035 16 C -0.002 4.002 17 N -0.325 5.325 18 C -0.367 4.367 19 H 0.100 0.900 20 C -0.165 4.165 21 N -0.540 5.540 22 Si 0.698 3.302 23 H -0.212 1.212 24 H -0.234 1.234 25 H -0.204 1.204 26 C 0.015 3.985 27 C -0.026 4.026 28 C -0.015 4.015 29 O -0.289 6.289 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.222 0.778 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.039 0.961 47 H 0.072 0.928 48 H 0.146 0.854 49 H 0.083 0.917 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.958 -4.508 4.656 20.035 hybrid contribution -0.576 1.264 -0.207 1.404 sum -19.533 -3.244 4.449 20.294 Atomic orbital electron populations 1.21794 0.93089 1.02819 1.02500 1.23029 0.95236 0.95849 0.84678 0.91094 1.23001 0.95172 1.00073 0.99436 1.22750 0.94505 1.02650 0.96880 0.87876 1.20121 0.83959 0.83844 0.81502 1.90699 1.83682 1.24938 1.41563 1.48941 1.11261 1.21440 1.52608 1.21923 1.04005 0.81842 0.93066 1.22314 0.99846 1.01340 0.96617 1.20298 0.88512 0.76906 0.84314 1.90818 1.14856 1.46967 1.85131 1.46042 1.10929 1.72572 1.08270 1.22217 0.95260 1.00208 0.85802 1.21531 0.96085 0.91903 0.90718 1.44804 1.05419 1.59571 1.22747 1.18612 0.82319 0.98977 1.36787 0.89963 1.25302 0.95449 0.96968 0.98786 1.69907 1.18317 1.32026 1.33730 0.87194 0.76412 0.87793 0.78793 1.21152 1.23382 1.20369 1.21464 0.93745 0.94291 0.89025 1.22805 0.83779 1.02321 0.93728 1.23265 0.85210 1.00553 0.92475 1.89128 1.26507 1.74688 1.38597 0.91889 0.91046 0.91801 0.90264 0.88276 0.88453 0.90025 0.90776 0.87875 0.77779 0.92654 0.89190 0.94221 0.92267 0.92980 0.92506 0.96091 0.92832 0.85411 0.91715 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.53 37.16 0.35 -0.81 16 2 C 0.07 0.73 3.91 -25.96 -0.10 0.62 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.14 -1.46 6.18 -25.16 -0.16 -1.62 16 5 C -0.15 -1.61 2.54 -90.20 -0.23 -1.84 16 6 H 0.10 0.90 6.33 -51.93 -0.33 0.57 16 7 C 0.52 7.99 6.24 -10.98 -0.07 7.92 16 8 O -0.53 -10.29 13.64 5.56 0.08 -10.22 16 9 N -0.61 -9.77 2.42 -171.25 -0.41 -10.19 16 10 C 0.12 1.42 5.35 -3.05 -0.02 1.40 16 11 C -0.16 -1.81 6.12 -27.57 -0.17 -1.97 16 12 C 0.51 8.34 4.75 -10.65 -0.05 8.29 16 13 O -0.50 -10.82 15.08 5.55 0.08 -10.74 16 14 N -0.73 -10.55 4.70 -59.69 -0.28 -10.83 16 15 C 0.09 1.47 6.57 -3.71 -0.02 1.44 16 16 C 0.12 2.35 6.09 -3.35 -0.02 2.33 16 17 N -0.60 -13.95 1.93 -171.17 -0.33 -14.28 16 18 C -0.24 -6.55 8.64 -15.06 -0.13 -6.68 16 19 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 20 C 0.03 1.00 4.63 -17.43 -0.08 0.92 16 21 N -0.90 -27.40 13.97 55.49 0.78 -26.63 16 22 Si 0.87 23.27 23.83 -169.99 -4.05 19.22 16 23 H -0.28 -7.62 6.03 56.52 0.34 -7.27 16 24 H -0.31 -8.33 7.11 56.52 0.40 -7.93 16 25 H -0.28 -7.53 7.06 56.52 0.40 -7.13 16 26 C 0.14 3.15 3.42 -3.33 -0.01 3.14 16 27 C 0.09 2.04 3.93 -3.32 -0.01 2.03 16 28 C 0.06 0.67 6.75 37.93 0.26 0.93 16 29 O -0.37 -4.34 11.35 -35.23 -0.40 -4.74 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 34 H 0.10 1.24 6.64 -51.93 -0.35 0.89 16 35 H 0.10 1.36 7.80 -51.93 -0.41 0.95 16 36 H 0.08 0.71 5.75 -51.93 -0.30 0.41 16 37 H 0.07 0.65 6.98 -51.93 -0.36 0.29 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.39 4.55 8.71 -40.82 -0.36 4.20 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.75 7.01 -51.93 -0.36 1.38 16 42 H 0.04 0.69 7.76 -51.93 -0.40 0.28 16 43 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.06 1.19 5.81 -51.93 -0.30 0.89 16 46 H 0.02 0.55 4.24 -51.92 -0.22 0.33 16 47 H 0.05 1.28 6.62 -51.93 -0.34 0.94 16 48 H 0.13 3.12 4.74 -51.93 -0.25 2.88 16 49 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 50 H 0.10 0.84 7.32 -51.93 -0.38 0.46 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -35.29 366.57 -7.23 -42.52 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.75 Total: 4.24 kcal Atomic # 6 Polarization: 16.58 SS G_CDS: -0.46 Total: 16.12 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.25 Total: -61.93 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.24 Total: -25.69 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.05 Total: 19.22 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.29 -7.23 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070976664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.255 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds