Wall clock time and date at job start Tue Mar 31 2020 23:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.33070 * 2 1 4 4 C 1.54470 * 110.46797 * 237.69099 * 2 1 3 5 5 C 1.54518 * 104.06293 * 217.14161 * 4 2 1 6 6 H 1.09000 * 110.51047 * 118.64432 * 5 4 2 7 7 C 1.50700 * 110.50895 * 241.21506 * 5 4 2 8 8 O 1.21277 * 120.00272 * 16.47210 * 7 5 4 9 9 N 1.34778 * 119.99768 * 196.46859 * 7 5 4 10 10 C 1.47744 * 121.65278 * 3.01357 * 9 7 5 11 11 C 1.53607 * 108.47553 * 87.79808 * 10 9 7 12 12 C 1.50704 * 109.49382 * 55.02047 * 11 10 9 13 13 O 1.21285 * 120.24407 * 65.68049 * 12 11 10 14 14 N 1.35511 * 119.52059 * 245.65350 * 12 11 10 15 15 C 1.47113 * 118.10826 * 179.97438 * 14 12 11 16 16 C 1.52988 * 109.17300 * 259.43830 * 15 14 12 17 17 N 1.47770 * 108.82388 * 57.75280 * 16 15 14 18 18 C 1.36939 * 121.64774 * 83.02413 * 17 16 15 19 19 H 1.07996 * 119.99923 * 327.20358 * 18 17 16 20 20 C 1.38810 * 119.99926 * 147.20596 * 18 17 16 21 21 N 1.31615 * 120.00289 * 156.07704 * 20 18 17 22 22 Si 1.86808 * 119.99956 * 336.07228 * 20 18 17 23 23 H 1.48497 * 109.46777 * 91.75316 * 22 20 18 24 24 H 1.48501 * 109.47154 * 211.75231 * 22 20 18 25 25 H 1.48498 * 109.46983 * 331.75448 * 22 20 18 26 26 C 1.47738 * 116.70686 * 263.00895 * 17 16 15 27 27 C 1.47764 * 121.65086 * 183.29906 * 9 7 5 28 28 C 1.54479 * 104.05970 * 359.97438 * 5 4 2 29 29 O 1.44425 * 110.37205 * 122.24720 * 2 1 3 30 30 H 1.09003 * 109.47371 * 299.20148 * 1 2 3 31 31 H 1.09004 * 109.47148 * 59.20270 * 1 2 3 32 32 H 1.08996 * 109.47061 * 179.20400 * 1 2 3 33 33 H 1.09002 * 110.50905 * 335.78035 * 4 2 1 34 34 H 1.08996 * 110.51681 * 98.50011 * 4 2 1 35 35 H 1.09000 * 109.58384 * 207.42976 * 10 9 7 36 36 H 1.09000 * 109.58267 * 327.84666 * 10 9 7 37 37 H 1.08996 * 109.50286 * 294.98450 * 11 10 9 38 38 H 1.08997 * 109.40759 * 174.99597 * 11 10 9 39 39 H 0.96995 * 120.94871 * 359.94982 * 14 12 11 40 40 H 1.09001 * 109.52055 * 139.53410 * 15 14 12 41 41 H 1.09002 * 109.57252 * 19.37423 * 15 14 12 42 42 H 1.08996 * 109.58197 * 297.94750 * 16 15 14 43 43 H 1.09005 * 109.68739 * 177.61818 * 16 15 14 44 44 H 0.97004 * 120.00579 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58139 * 14.86651 * 26 17 16 46 46 H 1.09008 * 109.69038 * 254.53931 * 26 17 16 47 47 H 1.08998 * 109.59071 * 69.84046 * 27 9 7 48 48 H 1.09006 * 109.58113 * 190.12479 * 27 9 7 49 49 H 1.09007 * 110.36941 * 265.14908 * 28 5 4 50 50 H 1.09001 * 110.36976 * 142.81453 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7735 -1.2231 5 6 3.3208 -1.5031 -0.6836 6 1 3.2003 -2.5829 -0.7707 7 6 4.5552 -1.0498 -1.4198 8 8 4.5300 -0.0297 -2.0752 9 7 5.6871 -1.7781 -1.3498 10 6 5.7404 -3.0596 -0.6165 11 6 5.3223 -4.1859 -1.5736 12 6 6.1904 -4.1475 -2.8050 13 8 7.3777 -4.3812 -2.7229 14 7 5.6347 -3.8506 -4.0047 15 6 6.5109 -3.8212 -5.1861 16 6 6.8577 -2.3687 -5.5185 17 7 7.5035 -1.7514 -4.3414 18 6 8.8401 -1.9099 -4.0896 19 1 9.3360 -2.8291 -4.3641 20 6 9.5577 -0.8890 -3.4816 21 7 10.6620 -1.1640 -2.8205 22 14 8.9559 0.8755 -3.6016 23 1 8.0851 1.1816 -2.4384 24 1 10.1207 1.7966 -3.6040 25 1 8.1837 1.0506 -4.8579 26 6 6.6359 -0.9544 -3.4498 27 6 6.9378 -1.3313 -1.9974 28 6 3.3886 -1.0834 0.8016 29 8 2.0328 -0.7224 1.1451 30 1 -0.3634 0.5014 0.8971 31 1 -0.3634 0.5262 -0.8828 32 1 -0.3633 -1.0275 -0.0143 33 1 1.3314 -1.4927 -1.5768 34 1 2.3451 -0.0833 -2.0206 35 1 6.7565 -3.2371 -0.2644 36 1 5.0583 -3.0230 0.2330 37 1 4.2793 -4.0516 -1.8601 38 1 5.4413 -5.1478 -1.0750 39 1 4.6862 -3.6631 -4.0824 40 1 5.9961 -4.2756 -6.0327 41 1 7.4258 -4.3752 -4.9760 42 1 5.9468 -1.8226 -5.7637 43 1 7.5409 -2.3393 -6.3673 44 1 11.1637 -0.4506 -2.3959 45 1 5.5902 -1.1679 -3.6712 46 1 6.8315 0.1074 -3.6000 47 1 7.3331 -0.4636 -1.4693 48 1 7.6701 -2.1385 -1.9735 49 1 4.0524 -0.2276 0.9241 50 1 3.7262 -1.9177 1.4165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070976664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:09 Heat of formation + Delta-G solvation = -97.012771 kcal Electronic energy + Delta-G solvation = -33234.409189 eV Core-core repulsion = 29069.125708 eV Total energy + Delta-G solvation = -4165.283481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.83366 -40.56389 -39.53811 -37.90227 -36.92640 -35.34231 -33.76258 -33.33236 -32.80544 -31.97797 -31.01238 -28.56522 -27.02759 -26.45384 -25.09866 -24.71553 -23.06391 -22.09877 -22.00371 -21.18927 -19.91743 -18.95351 -18.46245 -17.93990 -17.79234 -17.15231 -16.78533 -16.73750 -16.44874 -16.32002 -16.00182 -15.84230 -15.35002 -15.10659 -14.80785 -14.66815 -14.27277 -14.18444 -14.14807 -14.01332 -13.73412 -13.43206 -13.34069 -13.22008 -12.92411 -12.89498 -12.67837 -12.57709 -12.41740 -12.33019 -12.22827 -12.04264 -11.89263 -11.79897 -11.71267 -11.58063 -10.83540 -10.81435 -10.64167 -10.52902 -9.95165 -9.75134 -8.69028 -8.18068 -5.45652 1.23834 1.31336 1.40508 1.50339 1.80455 2.00442 2.38584 2.61421 2.85574 3.01911 3.36986 3.40649 3.58523 3.71377 3.87423 3.96640 4.02135 4.14985 4.17836 4.22158 4.29652 4.33360 4.39450 4.45208 4.48975 4.56872 4.59294 4.66028 4.67310 4.76650 4.76959 4.84554 4.85455 4.94089 4.96115 5.00075 5.02623 5.09109 5.11299 5.29485 5.29839 5.45770 5.77564 5.80110 5.92477 6.21672 6.45047 6.85811 6.94913 7.10576 7.62989 7.68434 8.11954 9.03112 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.004669 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.538917 B = 5995.584258 C = 6778.623334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.063 3.937 3 H 0.052 0.948 4 C -0.136 4.136 5 C -0.133 4.133 6 H 0.144 0.856 7 C 0.519 3.481 8 O -0.576 6.576 9 N -0.608 5.608 10 C 0.111 3.889 11 C -0.149 4.149 12 C 0.504 3.496 13 O -0.567 6.567 14 N -0.716 5.716 15 C 0.102 3.898 16 C 0.117 3.883 17 N -0.610 5.610 18 C -0.205 4.205 19 H 0.046 0.954 20 C -0.008 4.008 21 N -0.941 5.941 22 Si 0.919 3.081 23 H -0.290 1.290 24 H -0.311 1.311 25 H -0.279 1.279 26 C 0.151 3.849 27 C 0.113 3.887 28 C 0.060 3.940 29 O -0.378 6.378 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.409 0.591 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.258 0.742 45 H 0.078 0.922 46 H -0.011 1.011 47 H 0.017 0.983 48 H 0.097 0.903 49 H 0.041 0.959 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.493 -6.585 5.023 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.006 3.994 3 H 0.070 0.930 4 C -0.174 4.174 5 C -0.155 4.155 6 H 0.162 0.838 7 C 0.308 3.692 8 O -0.456 6.456 9 N -0.341 5.341 10 C -0.011 4.011 11 C -0.190 4.190 12 C 0.291 3.709 13 O -0.445 6.445 14 N -0.369 5.369 15 C -0.024 4.024 16 C -0.009 4.009 17 N -0.335 5.335 18 C -0.335 4.335 19 H 0.063 0.937 20 C -0.204 4.204 21 N -0.587 5.587 22 Si 0.751 3.249 23 H -0.218 1.218 24 H -0.240 1.240 25 H -0.205 1.205 26 C 0.026 3.974 27 C -0.010 4.010 28 C -0.017 4.017 29 O -0.297 6.297 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.246 0.754 40 H 0.120 0.880 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.007 0.993 47 H 0.036 0.964 48 H 0.116 0.884 49 H 0.059 0.941 50 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.655 -6.201 4.996 24.959 hybrid contribution 0.788 1.739 -0.353 1.941 sum -22.867 -4.462 4.644 23.757 Atomic orbital electron populations 1.21788 0.91087 1.03753 1.03096 1.23125 0.96838 0.94935 0.84499 0.92983 1.23009 0.95517 1.00233 0.98607 1.22800 0.91724 1.04859 0.96079 0.83839 1.20946 0.84626 0.82825 0.80787 1.90692 1.84484 1.26817 1.43570 1.48912 1.09569 1.23019 1.52603 1.22207 1.04324 0.80171 0.94411 1.22348 1.00713 1.02134 0.93810 1.21271 0.88317 0.75367 0.85932 1.90811 1.17942 1.49636 1.86093 1.45996 1.11714 1.71664 1.07534 1.21939 0.94931 0.97598 0.87973 1.21820 0.96571 0.93598 0.88873 1.44885 1.04242 1.59683 1.24659 1.18336 0.84012 0.96852 1.34325 0.93662 1.25612 0.95891 0.99172 0.99706 1.69997 1.20104 1.32518 1.36119 0.86350 0.75290 0.85004 0.78222 1.21839 1.24001 1.20495 1.21343 0.94317 0.92214 0.89502 1.22161 0.85933 0.99631 0.93307 1.23362 0.84726 1.00857 0.92789 1.89135 1.26669 1.74686 1.39201 0.91960 0.89882 0.90638 0.87257 0.90552 0.90817 0.85067 0.86657 0.85110 0.75441 0.87961 0.93018 0.91712 0.92684 0.93264 0.90427 0.99329 0.96440 0.88447 0.94053 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.53 71.98 0.69 -1.10 16 2 C 0.06 1.16 3.91 31.09 0.12 1.28 16 3 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 4 C -0.14 -2.35 6.18 31.61 0.20 -2.15 16 5 C -0.13 -2.35 2.54 -10.52 -0.03 -2.38 16 6 H 0.14 1.43 6.33 -2.39 -0.02 1.41 16 7 C 0.52 14.78 6.24 87.66 0.55 15.33 16 8 O -0.58 -21.85 13.64 -3.02 -0.04 -21.89 16 9 N -0.61 -18.55 2.42 -814.09 -1.97 -20.52 16 10 C 0.11 2.38 5.35 86.35 0.46 2.84 16 11 C -0.15 -2.71 6.12 30.05 0.18 -2.52 16 12 C 0.50 15.36 4.75 87.54 0.42 15.77 16 13 O -0.57 -24.71 15.08 -3.04 -0.05 -24.76 16 14 N -0.72 -18.69 4.70 -460.72 -2.16 -20.85 16 15 C 0.10 3.10 6.57 86.26 0.57 3.67 16 16 C 0.12 4.27 6.09 86.13 0.52 4.79 16 17 N -0.61 -28.68 1.93 -695.47 -1.34 -30.02 16 18 C -0.21 -11.75 8.64 84.03 0.73 -11.02 16 19 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 20 C -0.01 -0.48 4.63 84.86 0.39 -0.09 16 21 N -0.94 -60.44 13.97 21.65 0.30 -60.14 16 22 Si 0.92 50.52 23.83 68.60 1.64 52.15 16 23 H -0.29 -16.09 6.03 99.48 0.60 -15.49 16 24 H -0.31 -17.21 7.11 99.48 0.71 -16.50 16 25 H -0.28 -15.17 7.06 99.48 0.70 -14.47 16 26 C 0.15 6.85 3.42 86.16 0.29 7.14 16 27 C 0.11 5.00 3.93 86.16 0.34 5.34 16 28 C 0.06 1.07 6.75 72.48 0.49 1.56 16 29 O -0.38 -7.58 11.35 -148.98 -1.69 -9.27 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 33 H 0.11 1.26 7.87 -2.39 -0.02 1.24 16 34 H 0.08 1.74 6.64 -2.39 -0.02 1.72 16 35 H 0.07 1.99 7.80 -2.39 -0.02 1.97 16 36 H 0.13 1.55 5.75 -2.39 -0.01 1.53 16 37 H 0.12 1.18 6.98 -2.39 -0.02 1.16 16 38 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.41 7.56 8.71 -92.71 -0.81 6.75 16 40 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 2.02 7.01 -2.39 -0.02 2.00 16 42 H 0.06 2.06 7.76 -2.39 -0.02 2.04 16 43 H 0.05 2.05 8.13 -2.38 -0.02 2.03 16 44 H 0.26 15.94 8.31 -92.71 -0.77 15.16 16 45 H 0.08 3.15 5.81 -2.39 -0.01 3.13 16 46 H -0.01 -0.56 4.24 -2.38 -0.01 -0.57 16 47 H 0.02 0.87 6.62 -2.39 -0.02 0.86 16 48 H 0.10 4.97 4.74 -2.38 -0.01 4.96 16 49 H 0.04 0.94 7.86 -2.38 -0.02 0.92 16 50 H 0.13 1.50 7.32 -2.39 -0.02 1.48 16 Total: -1.00 -85.78 366.57 0.66 -85.12 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.05 Total: 11.71 kcal Atomic # 6 Polarization: 32.55 SS G_CDS: 5.92 Total: 38.47 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -5.17 Total: -131.54 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -1.78 Total: -55.92 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.64 Total: 52.15 kcal Total: -85.78 0.66 -85.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070976664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.893 kcal (2) G-P(sol) polarization free energy of solvation -85.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds