Wall clock time and date at job start Tue Mar 31 2020 23:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.75102 * 2 1 4 4 C 1.54383 * 110.85022 * 123.47573 * 2 1 3 5 5 O 1.43242 * 107.58920 * 139.74723 * 4 2 1 6 6 C 1.43640 * 109.96995 * 1.71425 * 5 4 2 7 7 H 1.09000 * 110.30941 * 94.58864 * 6 5 4 8 8 C 1.50703 * 110.30833 * 216.65571 * 6 5 4 9 9 O 1.21285 * 119.99911 * 0.70987 * 8 6 5 10 10 N 1.34774 * 120.00017 * 180.71541 * 8 6 5 11 11 C 1.47741 * 121.62984 * 177.93529 * 10 8 6 12 12 C 1.52986 * 108.95841 * 271.71247 * 11 10 8 13 13 C 1.50707 * 109.42588 * 305.26901 * 12 11 10 14 14 O 1.21279 * 120.12669 * 295.08644 * 13 12 11 15 15 N 1.35492 * 119.64551 * 115.17582 * 13 12 11 16 16 C 1.47122 * 118.10179 * 180.26334 * 15 13 12 17 17 C 1.53012 * 109.07308 * 100.16677 * 16 15 13 18 18 N 1.47764 * 108.80344 * 301.39651 * 17 16 15 19 19 C 1.36939 * 121.63705 * 277.42152 * 18 17 16 20 20 H 1.08001 * 120.00347 * 29.58285 * 19 18 17 21 21 C 1.38814 * 119.99590 * 209.58780 * 19 18 17 22 22 N 1.31620 * 120.00402 * 12.02767 * 21 19 18 23 23 Si 1.86799 * 119.99722 * 192.03086 * 21 19 18 24 24 H 1.48495 * 109.47384 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47295 * 119.99737 * 23 21 19 26 26 H 1.48497 * 109.47134 * 239.99655 * 23 21 19 27 27 C 1.47753 * 116.72502 * 97.43228 * 18 17 16 28 28 C 1.47769 * 121.63529 * 357.95161 * 10 8 6 29 29 C 1.54946 * 105.13874 * 335.56975 * 6 5 4 30 30 H 1.09002 * 109.47348 * 297.97757 * 1 2 3 31 31 H 1.08997 * 109.47183 * 57.97673 * 1 2 3 32 32 H 1.09002 * 109.47226 * 177.98013 * 1 2 3 33 33 H 1.08999 * 109.82690 * 20.23307 * 4 2 1 34 34 H 1.09001 * 109.90601 * 259.30751 * 4 2 1 35 35 H 1.09000 * 109.57220 * 31.59226 * 11 10 8 36 36 H 1.08998 * 109.57175 * 151.83813 * 11 10 8 37 37 H 1.09007 * 109.47334 * 65.12778 * 12 11 10 38 38 H 1.09002 * 109.47930 * 185.14660 * 12 11 10 39 39 H 0.97001 * 120.94509 * 0.25125 * 15 13 12 40 40 H 1.08993 * 109.53947 * 340.28712 * 16 15 13 41 41 H 1.09003 * 109.60675 * 220.08216 * 16 15 13 42 42 H 1.09006 * 109.57965 * 181.60264 * 17 16 15 43 43 H 1.09003 * 109.58385 * 61.20017 * 17 16 15 44 44 H 0.96993 * 120.00146 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.57551 * 105.90155 * 27 18 17 46 46 H 1.08995 * 109.58494 * 345.50456 * 27 18 17 47 47 H 1.09003 * 109.58483 * 169.78729 * 28 10 8 48 48 H 1.09000 * 109.58430 * 290.05861 * 28 10 8 49 49 H 1.08997 * 111.12534 * 154.36710 * 29 6 5 50 50 H 1.09002 * 111.12597 * 278.53063 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9161 1.0193 0.0000 4 6 2.0794 -0.7958 1.2034 5 8 3.2074 -1.5503 0.7448 6 6 3.4511 -1.2735 -0.6435 7 1 4.1975 -0.4859 -0.7469 8 6 3.9074 -2.5219 -1.3535 9 8 4.0064 -3.5651 -0.7427 10 7 4.2057 -2.4793 -2.6671 11 6 4.6991 -3.6703 -3.3887 12 6 6.2237 -3.7247 -3.2740 13 6 6.8098 -2.4250 -3.7626 14 8 6.6911 -2.1030 -4.9258 15 7 7.4710 -1.6202 -2.8961 16 6 8.0243 -0.3568 -3.4081 17 6 7.0825 0.7895 -3.0338 18 7 5.7496 0.5186 -3.6111 19 6 5.4560 0.8215 -4.9139 20 1 6.2360 0.8069 -5.6607 21 6 4.1557 1.1474 -5.2746 22 7 3.2579 1.3974 -4.3452 23 14 3.6802 1.2310 -7.0791 24 1 4.8628 0.9104 -7.9180 25 1 2.5988 0.2506 -7.3520 26 1 3.2011 2.5990 -7.4018 27 6 4.7490 -0.0948 -2.7136 28 6 4.0555 -1.2389 -3.4561 29 6 2.0871 -0.8021 -1.2076 30 1 -0.3634 0.4821 0.9076 31 1 -0.3633 0.5449 -0.8713 32 1 -0.3634 -1.0270 -0.0362 33 1 1.3119 -1.4710 1.5816 34 1 2.3892 -0.1097 1.9917 35 1 4.2674 -4.5690 -2.9482 36 1 4.4140 -3.6052 -4.4387 37 1 6.5045 -3.8789 -2.2321 38 1 6.6046 -4.5476 -3.8788 39 1 7.5764 -1.8699 -1.9647 40 1 8.1176 -0.4127 -4.4926 41 1 9.0053 -0.1816 -2.9664 42 1 7.4704 1.7264 -3.4339 43 1 7.0038 0.8583 -1.9488 44 1 2.3495 1.6255 -4.5972 45 1 4.0108 0.6532 -2.4240 46 1 5.2454 -0.4841 -1.8248 47 1 4.5157 -1.3708 -4.4354 48 1 2.9969 -1.0093 -3.5779 49 1 2.2227 -0.1592 -2.0773 50 1 1.4456 -1.6508 -1.4449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070980910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:51 Heat of formation + Delta-G solvation = -67.594752 kcal Electronic energy + Delta-G solvation = -33853.686056 eV Core-core repulsion = 29689.678237 eV Total energy + Delta-G solvation = -4164.007820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.40991 -39.18609 -38.02388 -36.24353 -35.22828 -33.71625 -33.36691 -31.95534 -30.98937 -29.58248 -28.89498 -26.65338 -26.24437 -24.93779 -23.82220 -23.19894 -21.55535 -20.54564 -20.39291 -19.79235 -18.60270 -17.39756 -16.68851 -16.41477 -16.05678 -15.78026 -15.48364 -15.07022 -14.82083 -14.64034 -14.37744 -13.97110 -13.73520 -13.53090 -13.23371 -13.21181 -12.99477 -12.87391 -12.75854 -12.50039 -12.29344 -12.24595 -11.78103 -11.41269 -11.30676 -11.18933 -11.15772 -11.01883 -10.91025 -10.83424 -10.56020 -10.54164 -10.34392 -10.10550 -9.95513 -9.88279 -9.47388 -9.13557 -8.97876 -8.78926 -8.37745 -8.15452 -6.64936 -5.76525 -3.28126 2.98476 3.15864 3.34143 3.36943 3.44682 3.49854 3.85842 4.18122 4.46575 4.55748 4.84343 4.95006 5.11447 5.20785 5.27675 5.29340 5.37254 5.39872 5.43435 5.50889 5.57464 5.72644 5.76113 5.82405 5.86153 5.89424 5.96287 6.01547 6.02901 6.04887 6.11618 6.14076 6.22323 6.25876 6.32846 6.41033 6.52307 6.59141 6.74197 6.81802 7.11057 7.13917 7.26660 7.41910 7.83089 7.94799 8.09354 8.33572 8.60620 8.91790 9.14991 9.74596 10.35336 11.24718 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.006282 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.404990 B = 4456.401588 C = 5880.896252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 H 0.090 0.910 4 C 0.054 3.946 5 O -0.362 6.362 6 C 0.055 3.945 7 H 0.115 0.885 8 C 0.522 3.478 9 O -0.545 6.545 10 N -0.613 5.613 11 C 0.128 3.872 12 C -0.157 4.157 13 C 0.521 3.479 14 O -0.519 6.519 15 N -0.725 5.725 16 C 0.087 3.913 17 C 0.126 3.874 18 N -0.583 5.583 19 C -0.217 4.217 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.908 5.908 23 Si 0.897 3.103 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.293 1.293 27 C 0.150 3.850 28 C 0.095 3.905 29 C -0.145 4.145 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.392 0.608 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.250 0.750 45 H 0.071 0.929 46 H 0.027 0.973 47 H 0.110 0.890 48 H 0.067 0.933 49 H 0.119 0.881 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.609 -4.099 7.779 8.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 H 0.108 0.892 4 C -0.023 4.023 5 O -0.281 6.281 6 C -0.005 4.005 7 H 0.132 0.868 8 C 0.309 3.691 9 O -0.423 6.423 10 N -0.348 5.348 11 C 0.004 3.996 12 C -0.198 4.198 13 C 0.306 3.694 14 O -0.393 6.393 15 N -0.377 5.377 16 C -0.039 4.039 17 C -0.002 4.002 18 N -0.306 5.306 19 C -0.347 4.347 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.554 5.554 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.220 1.220 27 C 0.025 3.975 28 C -0.027 4.027 29 C -0.183 4.183 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.225 0.775 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.128 0.872 48 H 0.085 0.915 49 H 0.137 0.863 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.508 -4.480 7.342 8.615 hybrid contribution -0.459 0.086 -0.652 0.801 sum 0.049 -4.394 6.690 8.004 Atomic orbital electron populations 1.21688 0.93864 1.01966 1.02082 1.22685 0.96900 1.00384 0.94351 0.89164 1.23249 0.88507 0.94148 0.96379 1.88454 1.48722 1.67623 1.23278 1.23434 0.99581 0.95313 0.82199 0.86756 1.20310 0.77169 0.89857 0.81726 1.90635 1.53668 1.32045 1.65957 1.49024 1.64485 1.12990 1.08305 1.21496 0.91251 0.89249 0.97563 1.22125 0.97820 0.96919 1.02948 1.20382 0.77705 0.85081 0.86217 1.90728 1.56927 1.74245 1.17418 1.46073 1.58060 1.21643 1.11944 1.22293 0.95294 0.84905 1.01404 1.21504 0.87607 0.95149 0.95898 1.44391 1.07311 1.69482 1.09434 1.18974 0.94111 1.37971 0.83665 0.91719 1.24989 0.97588 1.00026 0.97012 1.69922 1.03409 1.51364 1.30670 0.86272 0.78260 0.77001 0.85698 1.20286 1.21790 1.21984 1.21835 0.92269 0.93194 0.90225 1.22933 1.01475 0.81322 0.96960 1.23468 0.93981 1.00843 1.00006 0.92510 0.91838 0.92599 0.91589 0.91508 0.89845 0.89558 0.90428 0.88330 0.77520 0.89546 0.92778 0.92729 0.94163 0.93942 0.91175 0.95493 0.87227 0.91458 0.86307 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.15 37.15 0.34 -1.20 16 2 C -0.12 -1.64 3.59 -88.67 -0.32 -1.96 16 3 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.05 0.73 7.40 37.88 0.28 1.01 16 5 O -0.36 -6.35 10.60 -54.58 -0.58 -6.93 16 6 C 0.05 0.94 2.77 -26.85 -0.07 0.87 16 7 H 0.12 2.01 4.62 -51.93 -0.24 1.77 16 8 C 0.52 9.74 6.63 -10.98 -0.07 9.67 16 9 O -0.55 -11.48 16.32 -13.80 -0.23 -11.71 16 10 N -0.61 -10.91 2.44 -171.65 -0.42 -11.33 16 11 C 0.13 2.04 5.68 -3.37 -0.02 2.02 16 12 C -0.16 -2.30 6.20 -27.89 -0.17 -2.47 16 13 C 0.52 9.08 4.74 -10.66 -0.05 9.03 16 14 O -0.52 -11.14 14.92 5.56 0.08 -11.06 16 15 N -0.73 -11.26 4.77 -59.68 -0.28 -11.54 16 16 C 0.09 1.41 6.57 -3.70 -0.02 1.38 16 17 C 0.13 2.29 6.08 -3.34 -0.02 2.27 16 18 N -0.58 -12.65 2.26 -171.18 -0.39 -13.03 16 19 C -0.22 -5.40 8.33 -15.06 -0.13 -5.52 16 20 H 0.07 1.71 7.86 -52.49 -0.41 1.30 16 21 C 0.00 0.03 4.45 -17.43 -0.08 -0.04 16 22 N -0.91 -22.80 10.16 55.49 0.56 -22.24 16 23 Si 0.90 21.05 29.57 -169.99 -5.03 16.03 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.15 3.02 2.54 -3.35 -0.01 3.02 16 28 C 0.09 1.89 3.19 -3.34 -0.01 1.88 16 29 C -0.15 -2.29 4.87 -24.48 -0.12 -2.41 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.07 0.83 7.81 -51.93 -0.41 0.43 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.26 7.59 -51.93 -0.39 0.87 16 36 H 0.09 1.39 7.83 -51.93 -0.41 0.98 16 37 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.39 5.25 8.71 -40.82 -0.36 4.90 16 40 H 0.09 1.65 7.02 -51.93 -0.36 1.29 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 43 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 44 H 0.25 6.24 8.31 -40.82 -0.34 5.90 16 45 H 0.07 1.57 5.18 -51.93 -0.27 1.30 16 46 H 0.03 0.52 4.80 -51.93 -0.25 0.27 16 47 H 0.11 2.55 4.60 -51.93 -0.24 2.31 16 48 H 0.07 1.43 5.92 -51.93 -0.31 1.13 16 49 H 0.12 2.10 5.16 -51.93 -0.27 1.83 16 50 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -29.83 368.71 -8.85 -38.68 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.65 Total: 10.03 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: -0.47 Total: 17.55 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.53 Total: -58.15 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.72 Total: -29.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.83 -8.85 -38.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070980910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.915 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds