Wall clock time and date at job start Tue Mar 31 2020 23:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.75102 * 2 1 4 4 C 1.54383 * 110.85022 * 123.47573 * 2 1 3 5 5 O 1.43242 * 107.58920 * 139.74723 * 4 2 1 6 6 C 1.43640 * 109.96995 * 1.71425 * 5 4 2 7 7 H 1.09000 * 110.30941 * 94.58864 * 6 5 4 8 8 C 1.50703 * 110.30833 * 216.65571 * 6 5 4 9 9 O 1.21285 * 119.99911 * 0.70987 * 8 6 5 10 10 N 1.34774 * 120.00017 * 180.71541 * 8 6 5 11 11 C 1.47741 * 121.62984 * 177.93529 * 10 8 6 12 12 C 1.52986 * 108.95841 * 271.71247 * 11 10 8 13 13 C 1.50707 * 109.42588 * 305.26901 * 12 11 10 14 14 O 1.21279 * 120.12669 * 295.08644 * 13 12 11 15 15 N 1.35492 * 119.64551 * 115.17582 * 13 12 11 16 16 C 1.47122 * 118.10179 * 180.26334 * 15 13 12 17 17 C 1.53012 * 109.07308 * 100.16677 * 16 15 13 18 18 N 1.47764 * 108.80344 * 301.39651 * 17 16 15 19 19 C 1.36939 * 121.63705 * 277.42152 * 18 17 16 20 20 H 1.08001 * 120.00347 * 29.58285 * 19 18 17 21 21 C 1.38814 * 119.99590 * 209.58780 * 19 18 17 22 22 N 1.31620 * 120.00402 * 12.02767 * 21 19 18 23 23 Si 1.86799 * 119.99722 * 192.03086 * 21 19 18 24 24 H 1.48495 * 109.47384 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47295 * 119.99737 * 23 21 19 26 26 H 1.48497 * 109.47134 * 239.99655 * 23 21 19 27 27 C 1.47753 * 116.72502 * 97.43228 * 18 17 16 28 28 C 1.47769 * 121.63529 * 357.95161 * 10 8 6 29 29 C 1.54946 * 105.13874 * 335.56975 * 6 5 4 30 30 H 1.09002 * 109.47348 * 297.97757 * 1 2 3 31 31 H 1.08997 * 109.47183 * 57.97673 * 1 2 3 32 32 H 1.09002 * 109.47226 * 177.98013 * 1 2 3 33 33 H 1.08999 * 109.82690 * 20.23307 * 4 2 1 34 34 H 1.09001 * 109.90601 * 259.30751 * 4 2 1 35 35 H 1.09000 * 109.57220 * 31.59226 * 11 10 8 36 36 H 1.08998 * 109.57175 * 151.83813 * 11 10 8 37 37 H 1.09007 * 109.47334 * 65.12778 * 12 11 10 38 38 H 1.09002 * 109.47930 * 185.14660 * 12 11 10 39 39 H 0.97001 * 120.94509 * 0.25125 * 15 13 12 40 40 H 1.08993 * 109.53947 * 340.28712 * 16 15 13 41 41 H 1.09003 * 109.60675 * 220.08216 * 16 15 13 42 42 H 1.09006 * 109.57965 * 181.60264 * 17 16 15 43 43 H 1.09003 * 109.58385 * 61.20017 * 17 16 15 44 44 H 0.96993 * 120.00146 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.57551 * 105.90155 * 27 18 17 46 46 H 1.08995 * 109.58494 * 345.50456 * 27 18 17 47 47 H 1.09003 * 109.58483 * 169.78729 * 28 10 8 48 48 H 1.09000 * 109.58430 * 290.05861 * 28 10 8 49 49 H 1.08997 * 111.12534 * 154.36710 * 29 6 5 50 50 H 1.09002 * 111.12597 * 278.53063 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9161 1.0193 0.0000 4 6 2.0794 -0.7958 1.2034 5 8 3.2074 -1.5503 0.7448 6 6 3.4511 -1.2735 -0.6435 7 1 4.1975 -0.4859 -0.7469 8 6 3.9074 -2.5219 -1.3535 9 8 4.0064 -3.5651 -0.7427 10 7 4.2057 -2.4793 -2.6671 11 6 4.6991 -3.6703 -3.3887 12 6 6.2237 -3.7247 -3.2740 13 6 6.8098 -2.4250 -3.7626 14 8 6.6911 -2.1030 -4.9258 15 7 7.4710 -1.6202 -2.8961 16 6 8.0243 -0.3568 -3.4081 17 6 7.0825 0.7895 -3.0338 18 7 5.7496 0.5186 -3.6111 19 6 5.4560 0.8215 -4.9139 20 1 6.2360 0.8069 -5.6607 21 6 4.1557 1.1474 -5.2746 22 7 3.2579 1.3974 -4.3452 23 14 3.6802 1.2310 -7.0791 24 1 4.8628 0.9104 -7.9180 25 1 2.5988 0.2506 -7.3520 26 1 3.2011 2.5990 -7.4018 27 6 4.7490 -0.0948 -2.7136 28 6 4.0555 -1.2389 -3.4561 29 6 2.0871 -0.8021 -1.2076 30 1 -0.3634 0.4821 0.9076 31 1 -0.3633 0.5449 -0.8713 32 1 -0.3634 -1.0270 -0.0362 33 1 1.3119 -1.4710 1.5816 34 1 2.3892 -0.1097 1.9917 35 1 4.2674 -4.5690 -2.9482 36 1 4.4140 -3.6052 -4.4387 37 1 6.5045 -3.8789 -2.2321 38 1 6.6046 -4.5476 -3.8788 39 1 7.5764 -1.8699 -1.9647 40 1 8.1176 -0.4127 -4.4926 41 1 9.0053 -0.1816 -2.9664 42 1 7.4704 1.7264 -3.4339 43 1 7.0038 0.8583 -1.9488 44 1 2.3495 1.6255 -4.5972 45 1 4.0108 0.6532 -2.4240 46 1 5.2454 -0.4841 -1.8248 47 1 4.5157 -1.3708 -4.4354 48 1 2.9969 -1.0093 -3.5779 49 1 2.2227 -0.1592 -2.0773 50 1 1.4456 -1.6508 -1.4449 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070980910.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:50 Heat of formation + Delta-G solvation = -86.605150 kcal Electronic energy + Delta-G solvation = -33854.510409 eV Core-core repulsion = 29689.678237 eV Total energy + Delta-G solvation = -4164.832172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82047 -40.54258 -39.40964 -37.89434 -36.70058 -35.24193 -34.50757 -33.50497 -32.59358 -30.95672 -30.36070 -28.31936 -27.28790 -26.44809 -25.33317 -24.61864 -22.96378 -22.05826 -21.67528 -21.15650 -20.02325 -18.96743 -18.16102 -17.77857 -17.53968 -17.18449 -16.93555 -16.48176 -16.36764 -16.19914 -15.76286 -15.38242 -15.26156 -15.04521 -14.71307 -14.56356 -14.36650 -14.17384 -13.97279 -13.89373 -13.70221 -13.42473 -13.14759 -13.08937 -12.86263 -12.75899 -12.62869 -12.41723 -12.32316 -12.16463 -12.10325 -11.89566 -11.81640 -11.62693 -11.60849 -11.55196 -10.88428 -10.65832 -10.54194 -10.33179 -9.90591 -9.65813 -8.44656 -7.67138 -5.19427 1.43794 1.50269 1.50811 1.57702 1.75733 1.96280 2.55179 2.60126 2.90693 3.30330 3.41540 3.57635 3.72902 3.83317 3.92019 3.99792 4.05995 4.09797 4.23384 4.29669 4.43008 4.50890 4.54054 4.57067 4.60426 4.66583 4.72269 4.73615 4.77114 4.79855 4.82242 4.87064 4.90406 4.99360 5.06462 5.09036 5.20987 5.27830 5.31337 5.37976 5.61091 5.70673 5.77804 5.83781 5.91966 6.38644 6.50841 6.81925 7.11543 7.27766 7.59318 7.91327 8.48974 9.29072 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.006282 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.404990 B = 4456.401588 C = 5880.896252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.091 0.909 4 C 0.049 3.951 5 O -0.384 6.384 6 C 0.059 3.941 7 H 0.111 0.889 8 C 0.522 3.478 9 O -0.567 6.567 10 N -0.608 5.608 11 C 0.123 3.877 12 C -0.147 4.147 13 C 0.516 3.484 14 O -0.563 6.563 15 N -0.716 5.716 16 C 0.098 3.902 17 C 0.121 3.879 18 N -0.595 5.595 19 C -0.212 4.212 20 H 0.043 0.957 21 C -0.031 4.031 22 N -0.914 5.914 23 Si 0.934 3.066 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.294 1.294 27 C 0.166 3.834 28 C 0.118 3.882 29 C -0.141 4.141 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.406 0.594 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.247 0.753 45 H 0.051 0.949 46 H 0.041 0.959 47 H 0.081 0.919 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 -4.517 9.685 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.136 4.136 3 H 0.109 0.891 4 C -0.027 4.027 5 O -0.303 6.303 6 C -0.001 4.001 7 H 0.128 0.872 8 C 0.311 3.689 9 O -0.447 6.447 10 N -0.343 5.343 11 C 0.000 4.000 12 C -0.188 4.188 13 C 0.303 3.697 14 O -0.441 6.441 15 N -0.368 5.368 16 C -0.029 4.029 17 C -0.006 4.006 18 N -0.318 5.318 19 C -0.343 4.343 20 H 0.061 0.939 21 C -0.227 4.227 22 N -0.561 5.561 23 Si 0.766 3.234 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.222 1.222 27 C 0.040 3.960 28 C -0.004 4.004 29 C -0.179 4.179 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.242 0.758 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.099 0.901 48 H 0.070 0.930 49 H 0.116 0.884 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.811 -4.900 9.285 10.530 hybrid contribution -0.496 0.205 -1.219 1.331 sum 0.315 -4.695 8.066 9.339 Atomic orbital electron populations 1.21674 0.92113 1.02335 1.03086 1.22676 0.98325 0.99861 0.92760 0.89051 1.23485 0.87874 0.94573 0.96744 1.88425 1.50273 1.68566 1.22993 1.23318 1.00001 0.94276 0.82521 0.87218 1.20553 0.76639 0.90070 0.81641 1.90619 1.54786 1.32959 1.66330 1.48964 1.64270 1.12863 1.08156 1.21648 0.92354 0.88827 0.97165 1.22088 0.96415 0.96197 1.04077 1.20868 0.77214 0.85914 0.85744 1.90721 1.58606 1.75398 1.19405 1.46027 1.57191 1.21052 1.12510 1.22108 0.96695 0.84231 0.99850 1.21697 0.86174 0.95878 0.96820 1.44519 1.08947 1.69671 1.08699 1.18820 0.93529 1.37115 0.84821 0.93891 1.25291 0.97880 1.00969 0.98536 1.69986 1.03155 1.52118 1.30837 0.85704 0.77315 0.76476 0.83931 1.21223 1.22301 1.22151 1.21630 0.91612 0.92503 0.90210 1.22470 1.00060 0.82203 0.95707 1.23352 0.93550 1.00616 1.00347 0.90249 0.92219 0.92449 0.90385 0.89349 0.88593 0.90131 0.89129 0.85807 0.75841 0.92691 0.88591 0.93059 0.92163 0.94331 0.93104 0.94131 0.90057 0.92997 0.88399 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.15 71.98 0.66 -2.05 16 2 C -0.12 -2.91 3.59 -9.53 -0.03 -2.94 16 3 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 4 C 0.05 1.22 7.40 72.45 0.54 1.76 16 5 O -0.38 -12.81 10.60 -130.48 -1.38 -14.20 16 6 C 0.06 1.97 2.77 30.51 0.08 2.06 16 7 H 0.11 3.76 4.62 -2.39 -0.01 3.75 16 8 C 0.52 19.01 6.63 87.66 0.58 19.59 16 9 O -0.57 -23.11 16.32 15.46 0.25 -22.86 16 10 N -0.61 -21.35 2.44 -815.37 -1.99 -23.34 16 11 C 0.12 3.80 5.68 86.14 0.49 4.28 16 12 C -0.15 -4.02 6.20 29.85 0.18 -3.84 16 13 C 0.52 17.47 4.74 87.55 0.41 17.88 16 14 O -0.56 -24.37 14.92 -3.03 -0.05 -24.41 16 15 N -0.72 -20.87 4.77 -460.70 -2.20 -23.07 16 16 C 0.10 2.98 6.57 86.26 0.57 3.55 16 17 C 0.12 4.23 6.08 86.14 0.52 4.76 16 18 N -0.60 -25.80 2.26 -695.49 -1.57 -27.37 16 19 C -0.21 -10.71 8.33 84.03 0.70 -10.01 16 20 H 0.04 2.35 7.86 -2.91 -0.02 2.32 16 21 C -0.03 -1.57 4.45 84.86 0.38 -1.19 16 22 N -0.91 -46.53 10.16 21.65 0.22 -46.31 16 23 Si 0.93 44.09 29.57 68.60 2.03 46.12 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 C 0.17 6.65 2.54 86.14 0.22 6.87 16 28 C 0.12 4.78 3.19 86.14 0.28 5.06 16 29 C -0.14 -4.38 4.87 32.05 0.16 -4.23 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.08 1.75 7.81 -2.39 -0.02 1.74 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.10 2.76 7.59 -2.39 -0.02 2.74 16 36 H 0.08 2.59 7.83 -2.39 -0.02 2.57 16 37 H 0.09 2.28 7.93 -2.38 -0.02 2.26 16 38 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.41 9.71 8.71 -92.71 -0.81 8.90 16 40 H 0.05 2.08 7.02 -2.39 -0.02 2.07 16 41 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 1.83 8.13 -2.38 -0.02 1.81 16 43 H 0.06 1.87 7.75 -2.39 -0.02 1.85 16 44 H 0.25 12.47 8.31 -92.71 -0.77 11.70 16 45 H 0.05 2.30 5.18 -2.38 -0.01 2.28 16 46 H 0.04 1.51 4.80 -2.39 -0.01 1.50 16 47 H 0.08 3.86 4.60 -2.39 -0.01 3.85 16 48 H 0.05 2.27 5.92 -2.39 -0.01 2.25 16 49 H 0.10 3.51 5.16 -2.39 -0.01 3.50 16 50 H 0.07 2.17 7.94 -2.39 -0.02 2.15 16 Total: -1.00 -64.94 368.71 1.20 -63.73 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: 0.16 Total: 30.17 kcal Atomic # 6 Polarization: 35.81 SS G_CDS: 5.73 Total: 41.54 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -5.55 Total: -120.09 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -1.18 Total: -61.47 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -64.94 1.20 -63.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070980910.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.874 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds