Wall clock time and date at job start Tue Mar 31 2020 23:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.45588 * 2 1 4 4 C 1.54478 * 110.62539 * 237.32043 * 2 1 3 5 5 O 1.44425 * 104.80298 * 265.27587 * 4 2 1 6 6 C 1.44421 * 105.27557 * 319.48556 * 5 4 2 7 7 H 1.08990 * 110.47128 * 281.63142 * 6 5 4 8 8 C 1.50701 * 110.37258 * 159.34211 * 6 5 4 9 9 O 1.21279 * 119.99944 * 0.28591 * 8 6 5 10 10 N 1.34773 * 120.00133 * 180.28752 * 8 6 5 11 11 C 1.47758 * 121.64387 * 174.45647 * 10 8 6 12 12 C 1.53000 * 108.77827 * 88.86913 * 11 10 8 13 13 C 1.50691 * 109.50609 * 54.69811 * 12 11 10 14 14 O 1.21285 * 120.25575 * 65.14144 * 13 12 11 15 15 N 1.35530 * 119.49355 * 245.12062 * 13 12 11 16 16 C 1.47098 * 118.10310 * 180.42465 * 15 13 12 17 17 C 1.52973 * 109.20616 * 259.55372 * 16 15 13 18 18 N 1.47771 * 108.93865 * 57.46504 * 17 16 15 19 19 C 1.36939 * 121.65295 * 84.11650 * 18 17 16 20 20 H 1.07998 * 119.99492 * 331.80087 * 19 18 17 21 21 C 1.38811 * 119.99724 * 151.81041 * 19 18 17 22 22 N 1.31614 * 120.00300 * 346.78056 * 21 19 18 23 23 Si 1.86804 * 119.99633 * 166.78522 * 21 19 18 24 24 H 1.48502 * 109.46983 * 59.99886 * 23 21 19 25 25 H 1.48500 * 109.47102 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47080 * 299.99763 * 23 21 19 27 27 C 1.47572 * 116.80036 * 264.25329 * 18 17 16 28 28 C 1.47757 * 121.64361 * 354.43758 * 10 8 6 29 29 C 1.54480 * 104.80261 * 40.51455 * 6 5 4 30 30 H 1.09002 * 109.46813 * 297.39182 * 1 2 3 31 31 H 1.08997 * 109.47168 * 57.38882 * 1 2 3 32 32 H 1.08993 * 109.46931 * 177.39353 * 1 2 3 33 33 H 1.09002 * 110.37446 * 24.10473 * 4 2 1 34 34 H 1.08995 * 110.37328 * 146.33269 * 4 2 1 35 35 H 1.08997 * 109.58634 * 329.08209 * 11 10 8 36 36 H 1.09003 * 109.58756 * 208.65699 * 11 10 8 37 37 H 1.08998 * 109.46288 * 294.69540 * 12 11 10 38 38 H 1.08991 * 109.46851 * 174.71495 * 12 11 10 39 39 H 0.96995 * 120.94824 * 0.45153 * 15 13 12 40 40 H 1.08999 * 109.51424 * 139.62977 * 16 15 13 41 41 H 1.09000 * 109.55974 * 19.50179 * 16 15 13 42 42 H 1.09000 * 109.58035 * 177.33485 * 17 16 15 43 43 H 1.09005 * 109.57588 * 297.59664 * 17 16 15 44 44 H 0.97002 * 119.99840 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.56876 * 14.66522 * 27 18 17 46 46 H 1.08994 * 109.60027 * 254.39323 * 27 18 17 47 47 H 1.08997 * 109.58877 * 69.49377 * 28 10 8 48 48 H 1.09002 * 109.58559 * 189.92079 * 28 10 8 49 49 H 1.08997 * 110.51522 * 94.66241 * 29 6 5 50 50 H 1.08996 * 110.50965 * 217.37581 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0742 -0.7806 -1.2169 5 8 2.3118 -2.1165 -0.7221 6 6 2.8787 -1.9395 0.5943 7 1 3.9330 -1.6724 0.5226 8 6 2.7111 -3.1949 1.4109 9 8 2.1651 -4.1641 0.9278 10 7 3.1679 -3.2406 2.6780 11 6 2.9175 -4.4064 3.5507 12 6 4.0474 -5.4194 3.3557 13 6 5.3740 -4.7456 3.5948 14 8 5.6558 -4.3246 4.6967 15 7 6.2500 -4.6141 2.5690 16 6 7.5397 -3.9601 2.8387 17 6 7.4796 -2.5102 2.3548 18 7 6.3602 -1.8242 3.0330 19 6 6.5031 -1.2755 4.2795 20 1 7.2221 -1.6879 4.9718 21 6 5.7236 -0.1893 4.6531 22 7 5.0425 0.4757 3.7442 23 14 5.6413 0.3285 6.4461 24 1 7.0027 0.6833 6.9217 25 1 4.7478 1.5070 6.5804 26 1 5.1086 -0.7927 7.2612 27 6 5.0787 -1.7612 2.3040 28 6 3.9442 -2.1277 3.2628 29 6 2.0715 -0.7799 1.2190 30 1 -0.3633 0.4728 0.9125 31 1 -0.3633 0.5538 -0.8656 32 1 -0.3633 -1.0265 -0.0467 33 1 1.3349 -0.7985 -2.0177 34 1 3.0037 -0.3339 -1.5695 35 1 1.9655 -4.8650 3.2836 36 1 2.8910 -4.0845 4.5918 37 1 4.0155 -5.8075 2.3377 38 1 3.9248 -6.2407 4.0616 39 1 6.0326 -4.9416 1.6823 40 1 8.3333 -4.4880 2.3099 41 1 7.7412 -3.9785 3.9098 42 1 8.4158 -2.0060 2.5944 43 1 7.3201 -2.4913 1.2767 44 1 4.4981 1.2349 4.0053 45 1 5.0966 -2.4661 1.4727 46 1 4.9238 -0.7516 1.9235 47 1 3.2942 -1.2647 3.4065 48 1 4.3614 -2.4372 4.2211 49 1 1.2492 -1.1675 1.8203 50 1 2.7201 -0.1443 1.8216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070980913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:01 Heat of formation + Delta-G solvation = -71.577146 kcal Electronic energy + Delta-G solvation = -33807.249684 eV Core-core repulsion = 29643.069175 eV Total energy + Delta-G solvation = -4164.180509 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.38077 -39.20130 -38.03957 -36.22202 -35.21967 -33.71583 -33.23115 -31.89519 -30.98173 -29.47730 -28.97139 -26.65057 -26.30879 -24.94092 -23.83979 -23.24732 -21.61136 -20.36035 -20.29470 -19.79536 -18.72303 -17.22978 -16.67142 -16.41492 -16.02520 -15.93818 -15.56361 -14.97169 -14.76325 -14.59960 -14.36421 -14.05655 -13.69689 -13.55280 -13.37356 -13.22200 -12.91230 -12.80961 -12.63882 -12.40594 -12.33932 -12.25775 -11.77895 -11.47730 -11.31995 -11.19557 -11.14949 -10.98893 -10.86543 -10.74863 -10.61850 -10.56310 -10.34130 -10.11793 -9.96885 -9.89246 -9.51737 -9.19381 -9.07812 -8.79059 -8.36884 -8.15376 -6.65737 -5.75808 -3.26066 2.98765 3.14924 3.34753 3.39120 3.43077 3.49029 3.87079 4.25139 4.47694 4.61745 4.87061 4.99388 5.06753 5.20298 5.28028 5.28588 5.37357 5.41473 5.46502 5.52256 5.61937 5.70389 5.77014 5.81008 5.86392 5.88701 5.95765 6.01652 6.03701 6.05436 6.09501 6.13269 6.23525 6.26414 6.31324 6.34446 6.52314 6.60231 6.74074 6.79762 6.99951 7.11716 7.27869 7.42041 7.82152 7.94703 8.10109 8.33359 8.59524 8.92429 9.15542 9.75607 10.35559 11.25557 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.006033 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.410833 B = 4640.190804 C = 5935.441998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 H 0.087 0.913 4 C 0.047 3.953 5 O -0.352 6.352 6 C 0.052 3.948 7 H 0.109 0.891 8 C 0.528 3.472 9 O -0.544 6.544 10 N -0.614 5.614 11 C 0.129 3.871 12 C -0.157 4.157 13 C 0.521 3.479 14 O -0.519 6.519 15 N -0.725 5.725 16 C 0.088 3.912 17 C 0.127 3.873 18 N -0.583 5.583 19 C -0.219 4.219 20 H 0.064 0.936 21 C 0.001 3.999 22 N -0.908 5.908 23 Si 0.897 3.103 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.284 1.284 27 C 0.156 3.844 28 C 0.095 3.905 29 C -0.139 4.139 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.392 0.608 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.039 0.961 44 H 0.251 0.749 45 H 0.022 0.978 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.072 0.928 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.937 -4.431 -6.952 9.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 H 0.105 0.895 4 C -0.030 4.030 5 O -0.270 6.270 6 C -0.008 4.008 7 H 0.126 0.874 8 C 0.316 3.684 9 O -0.422 6.422 10 N -0.349 5.349 11 C 0.006 3.994 12 C -0.199 4.199 13 C 0.307 3.693 14 O -0.394 6.394 15 N -0.377 5.377 16 C -0.039 4.039 17 C -0.001 4.001 18 N -0.306 5.306 19 C -0.349 4.349 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.553 5.553 23 Si 0.727 3.273 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.210 1.210 27 C 0.031 3.969 28 C -0.027 4.027 29 C -0.177 4.177 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.225 0.775 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.128 0.872 49 H 0.090 0.910 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.162 -4.654 -6.478 8.997 hybrid contribution -0.140 0.433 0.690 0.826 sum -4.303 -4.221 -5.789 8.357 Atomic orbital electron populations 1.21814 0.94366 1.02081 1.01566 1.22515 0.96704 1.00282 0.94922 0.89502 1.23508 0.99958 0.83103 0.96434 1.89187 1.83280 1.25465 1.29071 1.23266 1.00173 0.93419 0.83961 0.87371 1.20032 0.78048 0.88674 0.81669 1.90639 1.43974 1.36982 1.70602 1.49019 1.54281 1.19939 1.11632 1.21518 0.96874 0.86087 0.94916 1.22117 0.94255 0.99638 1.03840 1.20391 0.85218 0.78920 0.84813 1.90731 1.77013 1.47841 1.23776 1.46078 1.18395 1.61460 1.11753 1.22277 0.83403 0.95267 1.02949 1.21481 0.92803 0.91106 0.94730 1.44327 1.04713 1.64201 1.17315 1.18884 1.20401 1.06767 0.88847 0.91817 1.24944 1.01412 0.96005 0.97296 1.69933 1.33798 1.20512 1.31095 0.86433 0.77577 0.77593 0.85658 1.21063 1.21849 1.21039 1.21593 0.85132 0.98681 0.91497 1.22956 0.92832 0.86678 1.00221 1.23026 1.00285 0.96347 0.98048 0.92457 0.92705 0.92304 0.89165 0.92117 0.89930 0.89544 0.90276 0.88421 0.77485 0.92792 0.89609 0.92646 0.94239 0.93845 0.95980 0.91573 0.91241 0.87236 0.90974 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.95 37.16 0.33 -1.29 16 2 C -0.13 -1.62 3.71 -89.05 -0.33 -1.95 16 3 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.05 0.62 7.19 37.93 0.27 0.89 16 5 O -0.35 -6.09 10.91 -54.45 -0.59 -6.68 16 6 C 0.05 0.90 2.65 -27.11 -0.07 0.82 16 7 H 0.11 1.92 4.69 -51.93 -0.24 1.67 16 8 C 0.53 9.82 6.32 -10.99 -0.07 9.75 16 9 O -0.54 -11.37 16.38 -13.66 -0.22 -11.60 16 10 N -0.61 -10.92 2.44 -171.65 -0.42 -11.34 16 11 C 0.13 2.06 5.67 -3.35 -0.02 2.04 16 12 C -0.16 -2.32 6.19 -27.89 -0.17 -2.50 16 13 C 0.52 9.19 4.70 -10.65 -0.05 9.14 16 14 O -0.52 -11.25 15.01 5.55 0.08 -11.16 16 15 N -0.72 -11.42 4.59 -59.71 -0.27 -11.70 16 16 C 0.09 1.42 6.59 -3.73 -0.02 1.40 16 17 C 0.13 2.32 6.08 -3.36 -0.02 2.30 16 18 N -0.58 -12.79 2.29 -171.36 -0.39 -13.18 16 19 C -0.22 -5.49 8.47 -15.06 -0.13 -5.61 16 20 H 0.06 1.68 7.86 -52.49 -0.41 1.27 16 21 C 0.00 0.02 4.37 -17.43 -0.08 -0.05 16 22 N -0.91 -22.96 10.04 55.49 0.56 -22.40 16 23 Si 0.90 21.11 29.57 -169.99 -5.03 16.08 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 27 C 0.16 3.21 2.66 -3.45 -0.01 3.20 16 28 C 0.09 1.91 3.16 -3.35 -0.01 1.90 16 29 C -0.14 -2.17 5.05 -25.16 -0.13 -2.30 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.02 7.88 -51.93 -0.41 0.61 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 36 H 0.09 1.39 7.84 -51.93 -0.41 0.99 16 37 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 38 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.39 5.39 8.70 -40.82 -0.36 5.03 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.64 7.02 -51.93 -0.36 1.28 16 42 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 43 H 0.04 0.67 7.79 -51.93 -0.40 0.27 16 44 H 0.25 6.33 8.31 -40.82 -0.34 5.99 16 45 H 0.02 0.43 5.29 -51.93 -0.27 0.16 16 46 H 0.07 1.51 5.79 -51.93 -0.30 1.21 16 47 H 0.07 1.48 5.82 -51.93 -0.30 1.18 16 48 H 0.11 2.57 4.57 -51.93 -0.24 2.33 16 49 H 0.07 1.15 7.46 -51.93 -0.39 0.76 16 50 H 0.11 1.82 6.69 -51.93 -0.35 1.47 16 LS Contribution 370.75 15.07 5.59 5.59 Total: -1.00 -29.96 370.75 -8.98 -38.94 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.77 Total: 9.72 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: -0.50 Total: 17.74 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.53 Total: -58.62 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.73 Total: -29.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.96 -8.98 -38.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070980913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.640 kcal (2) G-P(sol) polarization free energy of solvation -29.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds