Wall clock time and date at job start Tue Mar 31 2020 23:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.45588 * 2 1 4 4 C 1.54478 * 110.62539 * 237.32043 * 2 1 3 5 5 O 1.44425 * 104.80298 * 265.27587 * 4 2 1 6 6 C 1.44421 * 105.27557 * 319.48556 * 5 4 2 7 7 H 1.08990 * 110.47128 * 281.63142 * 6 5 4 8 8 C 1.50701 * 110.37258 * 159.34211 * 6 5 4 9 9 O 1.21279 * 119.99944 * 0.28591 * 8 6 5 10 10 N 1.34773 * 120.00133 * 180.28752 * 8 6 5 11 11 C 1.47758 * 121.64387 * 174.45647 * 10 8 6 12 12 C 1.53000 * 108.77827 * 88.86913 * 11 10 8 13 13 C 1.50691 * 109.50609 * 54.69811 * 12 11 10 14 14 O 1.21285 * 120.25575 * 65.14144 * 13 12 11 15 15 N 1.35530 * 119.49355 * 245.12062 * 13 12 11 16 16 C 1.47098 * 118.10310 * 180.42465 * 15 13 12 17 17 C 1.52973 * 109.20616 * 259.55372 * 16 15 13 18 18 N 1.47771 * 108.93865 * 57.46504 * 17 16 15 19 19 C 1.36939 * 121.65295 * 84.11650 * 18 17 16 20 20 H 1.07998 * 119.99492 * 331.80087 * 19 18 17 21 21 C 1.38811 * 119.99724 * 151.81041 * 19 18 17 22 22 N 1.31614 * 120.00300 * 346.78056 * 21 19 18 23 23 Si 1.86804 * 119.99633 * 166.78522 * 21 19 18 24 24 H 1.48502 * 109.46983 * 59.99886 * 23 21 19 25 25 H 1.48500 * 109.47102 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47080 * 299.99763 * 23 21 19 27 27 C 1.47572 * 116.80036 * 264.25329 * 18 17 16 28 28 C 1.47757 * 121.64361 * 354.43758 * 10 8 6 29 29 C 1.54480 * 104.80261 * 40.51455 * 6 5 4 30 30 H 1.09002 * 109.46813 * 297.39182 * 1 2 3 31 31 H 1.08997 * 109.47168 * 57.38882 * 1 2 3 32 32 H 1.08993 * 109.46931 * 177.39353 * 1 2 3 33 33 H 1.09002 * 110.37446 * 24.10473 * 4 2 1 34 34 H 1.08995 * 110.37328 * 146.33269 * 4 2 1 35 35 H 1.08997 * 109.58634 * 329.08209 * 11 10 8 36 36 H 1.09003 * 109.58756 * 208.65699 * 11 10 8 37 37 H 1.08998 * 109.46288 * 294.69540 * 12 11 10 38 38 H 1.08991 * 109.46851 * 174.71495 * 12 11 10 39 39 H 0.96995 * 120.94824 * 0.45153 * 15 13 12 40 40 H 1.08999 * 109.51424 * 139.62977 * 16 15 13 41 41 H 1.09000 * 109.55974 * 19.50179 * 16 15 13 42 42 H 1.09000 * 109.58035 * 177.33485 * 17 16 15 43 43 H 1.09005 * 109.57588 * 297.59664 * 17 16 15 44 44 H 0.97002 * 119.99840 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.56876 * 14.66522 * 27 18 17 46 46 H 1.08994 * 109.60027 * 254.39323 * 27 18 17 47 47 H 1.08997 * 109.58877 * 69.49377 * 28 10 8 48 48 H 1.09002 * 109.58559 * 189.92079 * 28 10 8 49 49 H 1.08997 * 110.51522 * 94.66241 * 29 6 5 50 50 H 1.08996 * 110.50965 * 217.37581 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0213 0.0000 4 6 2.0742 -0.7806 -1.2169 5 8 2.3118 -2.1165 -0.7221 6 6 2.8787 -1.9395 0.5943 7 1 3.9330 -1.6724 0.5226 8 6 2.7111 -3.1949 1.4109 9 8 2.1651 -4.1641 0.9278 10 7 3.1679 -3.2406 2.6780 11 6 2.9175 -4.4064 3.5507 12 6 4.0474 -5.4194 3.3557 13 6 5.3740 -4.7456 3.5948 14 8 5.6558 -4.3246 4.6967 15 7 6.2500 -4.6141 2.5690 16 6 7.5397 -3.9601 2.8387 17 6 7.4796 -2.5102 2.3548 18 7 6.3602 -1.8242 3.0330 19 6 6.5031 -1.2755 4.2795 20 1 7.2221 -1.6879 4.9718 21 6 5.7236 -0.1893 4.6531 22 7 5.0425 0.4757 3.7442 23 14 5.6413 0.3285 6.4461 24 1 7.0027 0.6833 6.9217 25 1 4.7478 1.5070 6.5804 26 1 5.1086 -0.7927 7.2612 27 6 5.0787 -1.7612 2.3040 28 6 3.9442 -2.1277 3.2628 29 6 2.0715 -0.7799 1.2190 30 1 -0.3633 0.4728 0.9125 31 1 -0.3633 0.5538 -0.8656 32 1 -0.3633 -1.0265 -0.0467 33 1 1.3349 -0.7985 -2.0177 34 1 3.0037 -0.3339 -1.5695 35 1 1.9655 -4.8650 3.2836 36 1 2.8910 -4.0845 4.5918 37 1 4.0155 -5.8075 2.3377 38 1 3.9248 -6.2407 4.0616 39 1 6.0326 -4.9416 1.6823 40 1 8.3333 -4.4880 2.3099 41 1 7.7412 -3.9785 3.9098 42 1 8.4158 -2.0060 2.5944 43 1 7.3201 -2.4913 1.2767 44 1 4.4981 1.2349 4.0053 45 1 5.0966 -2.4661 1.4727 46 1 4.9238 -0.7516 1.9235 47 1 3.2942 -1.2647 3.4065 48 1 4.3614 -2.4372 4.2211 49 1 1.2492 -1.1675 1.8203 50 1 2.7201 -0.1443 1.8216 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070980913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:00 Heat of formation + Delta-G solvation = -90.620091 kcal Electronic energy + Delta-G solvation = -33808.075448 eV Core-core repulsion = 29643.069175 eV Total energy + Delta-G solvation = -4165.006273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78724 -40.56075 -39.42169 -37.89074 -36.69684 -35.25680 -34.36693 -33.45875 -32.58912 -30.85723 -30.44283 -28.32634 -27.34856 -26.44665 -25.36988 -24.66625 -23.03072 -22.02477 -21.41258 -21.18037 -20.15496 -18.84738 -18.15731 -17.80733 -17.42140 -17.34634 -17.01015 -16.48832 -16.35461 -16.07272 -15.66074 -15.50066 -15.25985 -15.01619 -14.73621 -14.66400 -14.39026 -14.17692 -13.99412 -13.71923 -13.62754 -13.41885 -13.21226 -13.08788 -12.89287 -12.74940 -12.68150 -12.41465 -12.32971 -12.21275 -12.02170 -11.84977 -11.81090 -11.68533 -11.63875 -11.54584 -10.87593 -10.69620 -10.55140 -10.51100 -9.91538 -9.66451 -8.46903 -7.67873 -5.18823 1.46265 1.49621 1.50477 1.55800 1.74931 1.95310 2.54904 2.60067 2.98984 3.33783 3.41073 3.65569 3.72293 3.86497 3.91938 3.98375 4.05993 4.13975 4.23118 4.28084 4.41673 4.50433 4.55154 4.59467 4.60602 4.65742 4.70786 4.74180 4.76528 4.77411 4.82232 4.86656 4.91350 4.96556 5.05955 5.08053 5.13943 5.26342 5.30136 5.33181 5.60488 5.68230 5.76576 5.78800 5.82335 6.37317 6.49534 6.80705 7.10426 7.26766 7.58134 7.90882 8.47719 9.28622 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010267 B = 0.006033 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.410833 B = 4640.190804 C = 5935.441998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 H 0.099 0.901 4 C 0.042 3.958 5 O -0.373 6.373 6 C 0.056 3.944 7 H 0.102 0.898 8 C 0.529 3.471 9 O -0.565 6.565 10 N -0.609 5.609 11 C 0.124 3.876 12 C -0.147 4.147 13 C 0.516 3.484 14 O -0.564 6.564 15 N -0.716 5.716 16 C 0.098 3.902 17 C 0.121 3.879 18 N -0.595 5.595 19 C -0.215 4.215 20 H 0.044 0.956 21 C -0.031 4.031 22 N -0.914 5.914 23 Si 0.934 3.066 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.296 1.296 27 C 0.173 3.827 28 C 0.119 3.881 29 C -0.134 4.134 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.406 0.594 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.248 0.752 45 H 0.034 0.966 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.332 -5.008 -8.670 10.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.140 4.140 3 H 0.117 0.883 4 C -0.034 4.034 5 O -0.292 6.292 6 C -0.005 4.005 7 H 0.120 0.880 8 C 0.317 3.683 9 O -0.444 6.444 10 N -0.343 5.343 11 C 0.002 3.998 12 C -0.188 4.188 13 C 0.303 3.697 14 O -0.442 6.442 15 N -0.368 5.368 16 C -0.029 4.029 17 C -0.005 4.005 18 N -0.318 5.318 19 C -0.346 4.346 20 H 0.062 0.938 21 C -0.227 4.227 22 N -0.561 5.561 23 Si 0.766 3.234 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.224 1.224 27 C 0.047 3.953 28 C -0.004 4.004 29 C -0.172 4.172 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.141 0.859 39 H 0.241 0.759 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.542 -5.250 -8.235 10.771 hybrid contribution 0.017 0.576 1.196 1.327 sum -4.525 -4.675 -7.039 9.585 Atomic orbital electron populations 1.21787 0.93084 1.01681 1.02852 1.22542 0.97752 1.00395 0.93309 0.88265 1.23770 1.01297 0.81432 0.96875 1.89162 1.83308 1.27890 1.28829 1.23159 1.00008 0.93022 0.84301 0.88047 1.20265 0.77489 0.88854 0.81647 1.90622 1.45024 1.37812 1.70989 1.48950 1.53726 1.19928 1.11725 1.21674 0.98098 0.85734 0.94324 1.22082 0.91889 0.99585 1.05274 1.20884 0.86097 0.78343 0.84375 1.90722 1.77999 1.49834 1.25612 1.46040 1.17995 1.60617 1.12136 1.22096 0.84783 0.94476 1.01527 1.21677 0.91510 0.91858 0.95503 1.44463 1.06218 1.64411 1.16726 1.18769 1.19622 1.06348 0.89889 0.93819 1.25263 1.02004 0.96577 0.98900 1.70003 1.34147 1.20620 1.31322 0.85852 0.77154 0.76718 0.83701 1.21195 1.21791 1.22378 1.21368 0.84730 0.97704 0.91455 1.22472 0.92488 0.86660 0.98760 1.22930 0.99503 0.95891 0.98899 0.92268 0.90270 0.93602 0.86862 0.90977 0.88510 0.90102 0.89087 0.85888 0.75884 0.88578 0.92639 0.92933 0.92340 0.94280 0.94781 0.93698 0.92711 0.90093 0.91749 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.95 71.98 0.64 -2.21 16 2 C -0.12 -2.93 3.71 -9.78 -0.04 -2.97 16 3 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 4 C 0.04 1.03 7.19 72.48 0.52 1.55 16 5 O -0.37 -12.38 10.91 -130.60 -1.42 -13.80 16 6 C 0.06 1.87 2.65 30.35 0.08 1.95 16 7 H 0.10 3.54 4.69 -2.39 -0.01 3.53 16 8 C 0.53 19.25 6.32 87.66 0.55 19.81 16 9 O -0.56 -22.88 16.38 15.35 0.25 -22.63 16 10 N -0.61 -21.43 2.44 -815.37 -1.99 -23.42 16 11 C 0.12 3.85 5.67 86.14 0.49 4.34 16 12 C -0.15 -4.09 6.19 29.85 0.18 -3.91 16 13 C 0.52 17.71 4.70 87.54 0.41 18.13 16 14 O -0.56 -24.62 15.01 -3.05 -0.05 -24.67 16 15 N -0.72 -21.28 4.59 -460.77 -2.12 -23.40 16 16 C 0.10 3.02 6.59 86.26 0.57 3.59 16 17 C 0.12 4.30 6.08 86.13 0.52 4.82 16 18 N -0.60 -26.14 2.29 -696.05 -1.59 -27.74 16 19 C -0.22 -10.97 8.47 84.03 0.71 -10.25 16 20 H 0.04 2.38 7.86 -2.91 -0.02 2.36 16 21 C -0.03 -1.61 4.37 84.86 0.37 -1.24 16 22 N -0.91 -46.85 10.04 21.65 0.22 -46.63 16 23 Si 0.93 44.13 29.57 68.60 2.03 46.15 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 27 C 0.17 7.07 2.66 86.17 0.23 7.30 16 28 C 0.12 4.84 3.16 86.14 0.27 5.12 16 29 C -0.13 -4.15 5.05 31.61 0.16 -3.99 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 2.21 7.88 -2.39 -0.02 2.19 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 2.75 7.68 -2.39 -0.02 2.73 16 36 H 0.08 2.60 7.84 -2.39 -0.02 2.58 16 37 H 0.09 2.34 7.93 -2.39 -0.02 2.32 16 38 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.41 10.03 8.70 -92.71 -0.81 9.23 16 40 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 2.11 7.02 -2.39 -0.02 2.09 16 42 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 43 H 0.06 1.86 7.79 -2.38 -0.02 1.84 16 44 H 0.25 12.62 8.31 -92.71 -0.77 11.85 16 45 H 0.03 1.30 5.29 -2.39 -0.01 1.29 16 46 H 0.05 2.08 5.79 -2.39 -0.01 2.06 16 47 H 0.05 2.40 5.82 -2.39 -0.01 2.39 16 48 H 0.08 3.87 4.57 -2.39 -0.01 3.86 16 49 H 0.06 2.06 7.46 -2.39 -0.02 2.04 16 50 H 0.09 3.04 6.69 -2.39 -0.02 3.03 16 Total: -1.00 -65.26 370.75 1.17 -64.09 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.16 Total: 30.01 kcal Atomic # 6 Polarization: 36.34 SS G_CDS: 5.68 Total: 42.02 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.48 Total: -121.18 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -1.22 Total: -61.10 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -65.26 1.17 -64.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070980913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.530 kcal (2) G-P(sol) polarization free energy of solvation -65.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds