Wall clock time and date at job start Tue Mar 31 2020 23:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.99076 * 2 1 4 4 O 1.43748 * 109.87476 * 121.08146 * 2 1 3 5 5 C 1.44379 * 106.97130 * 145.93901 * 4 2 1 6 6 C 1.54995 * 103.49198 * 319.93844 * 5 4 2 7 7 C 1.54097 * 109.87583 * 238.91425 * 2 1 3 8 8 H 1.08995 * 110.49285 * 357.35222 * 7 2 1 9 9 C 1.50700 * 110.48423 * 119.87450 * 7 2 1 10 10 O 1.21277 * 120.00461 * 3.73477 * 9 7 2 11 11 N 1.34778 * 119.99461 * 183.74327 * 9 7 2 12 12 C 1.47773 * 121.65885 * 184.92461 * 11 9 7 13 13 C 1.53003 * 108.77884 * 272.65783 * 12 11 9 14 14 C 1.50692 * 109.49140 * 302.42293 * 13 12 11 15 15 O 1.21278 * 120.45719 * 292.36207 * 14 13 12 16 16 N 1.36108 * 119.09664 * 112.38678 * 14 13 12 17 17 C 1.47652 * 116.60045 * 179.54112 * 16 14 13 18 18 C 1.52994 * 108.86652 * 104.09827 * 17 16 14 19 19 N 1.47737 * 108.82950 * 303.84314 * 18 17 16 20 20 C 1.36933 * 121.64079 * 273.19688 * 19 18 17 21 21 H 1.08005 * 120.00356 * 30.56312 * 20 19 18 22 22 C 1.38816 * 120.00002 * 210.56223 * 20 19 18 23 23 N 1.31613 * 120.00017 * 12.25833 * 22 20 19 24 24 Si 1.86805 * 119.99924 * 192.26121 * 22 20 19 25 25 H 1.48499 * 109.47241 * 90.00011 * 24 22 20 26 26 H 1.48500 * 109.46752 * 209.99973 * 24 22 20 27 27 H 1.48500 * 109.47109 * 330.00173 * 24 22 20 28 28 C 1.47769 * 116.72035 * 93.17643 * 19 18 17 29 29 C 1.47745 * 121.66437 * 4.63263 * 11 9 7 30 30 H 1.08998 * 109.47293 * 181.08699 * 1 2 3 31 31 H 1.09003 * 109.46561 * 301.08728 * 1 2 3 32 32 H 1.08994 * 109.47086 * 61.08206 * 1 2 3 33 33 H 1.09008 * 110.62092 * 78.43714 * 5 4 2 34 34 H 1.09002 * 110.62105 * 201.28144 * 5 4 2 35 35 H 1.09003 * 110.90950 * 278.82756 * 6 5 4 36 36 H 1.08996 * 110.91110 * 155.22280 * 6 5 4 37 37 H 1.08994 * 109.58343 * 32.44500 * 12 11 9 38 38 H 1.08997 * 109.58546 * 152.72962 * 12 11 9 39 39 H 1.08995 * 109.46583 * 62.43455 * 13 12 11 40 40 H 1.09004 * 109.46437 * 182.42112 * 13 12 11 41 41 H 0.97004 * 121.70210 * 359.52105 * 16 14 13 42 42 H 1.09006 * 109.57454 * 223.91275 * 17 16 14 43 43 H 1.09000 * 109.57388 * 344.28520 * 17 16 14 44 44 H 1.08991 * 109.57714 * 63.64968 * 18 17 16 45 45 H 1.09002 * 109.57846 * 183.90729 * 18 17 16 46 46 H 0.96997 * 119.99990 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.57865 * 343.36764 * 28 19 18 48 48 H 1.09005 * 109.58185 * 103.76967 * 28 19 18 49 49 H 1.09007 * 109.58165 * 172.51827 * 29 11 9 50 50 H 1.08992 * 109.58763 * 292.93613 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1578 5 6 3.2379 -1.3641 0.7648 6 6 2.9196 -1.8915 -0.6574 7 6 2.0540 -0.7482 -1.2411 8 1 1.2246 -1.1529 -1.8210 9 6 2.8946 0.1675 -2.0931 10 8 3.1267 1.2983 -1.7215 11 7 3.3883 -0.2704 -3.2683 12 6 4.3035 0.5570 -4.0816 13 6 3.4713 1.4570 -4.9974 14 6 2.5732 0.6059 -5.8576 15 8 3.0435 -0.1163 -6.7109 16 7 1.2270 0.6592 -5.6644 17 6 0.3987 -0.1890 -6.5443 18 6 -0.0784 -1.4072 -5.7511 19 7 1.0996 -2.1110 -5.2038 20 6 1.7704 -3.0596 -5.9285 21 1 1.8081 -2.9897 -7.0056 22 6 2.4022 -4.1111 -5.2788 23 7 2.1616 -4.3372 -4.0048 24 14 3.5939 -5.2053 -6.2128 25 1 4.9651 -4.6447 -6.1100 26 1 3.5725 -6.5710 -5.6301 27 1 3.1913 -5.2699 -7.6408 28 6 1.5186 -1.7407 -3.8360 29 6 3.0465 -1.6040 -3.8045 30 1 -0.3634 -1.0274 0.0195 31 1 -0.3632 0.5307 0.8801 32 1 -0.3633 0.4969 -0.8995 33 1 4.0686 -0.6588 0.7357 34 1 3.4600 -2.1890 1.4418 35 1 2.3540 -2.8220 -0.6098 36 1 3.8332 -2.0225 -1.2373 37 1 4.9194 1.1725 -3.4261 38 1 4.9427 -0.0889 -4.6834 39 1 2.8637 2.1292 -4.3916 40 1 4.1359 2.0418 -5.6334 41 1 0.8319 1.2254 -4.9830 42 1 -0.4632 0.3795 -6.8939 43 1 0.9915 -0.5184 -7.3977 44 1 -0.7218 -1.0817 -4.9338 45 1 -0.6335 -2.0766 -6.4084 46 1 2.6028 -5.0722 -3.5509 47 1 1.0599 -0.7919 -3.5577 48 1 1.2094 -2.5173 -3.1364 49 1 3.4404 -1.7030 -4.8161 50 1 3.4761 -2.3757 -3.1659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071010289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:50 Heat of formation + Delta-G solvation = -74.337734 kcal Electronic energy + Delta-G solvation = -33914.178467 eV Core-core repulsion = 29749.878250 eV Total energy + Delta-G solvation = -4164.300217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.55739 -39.21981 -38.01472 -36.26278 -35.26710 -33.72036 -32.63383 -31.51335 -31.21910 -30.41588 -29.12326 -26.66542 -26.40493 -24.52562 -23.73779 -22.67937 -22.02958 -20.77130 -20.29522 -19.85830 -18.71664 -17.07532 -16.67948 -16.49490 -16.04417 -15.81098 -15.52319 -15.13018 -14.91288 -14.67355 -14.59806 -14.07788 -13.78760 -13.44435 -13.31362 -13.08148 -13.03932 -12.80515 -12.66252 -12.34211 -12.27255 -12.21700 -11.75975 -11.53258 -11.37317 -11.33041 -11.21492 -11.07800 -10.89756 -10.81364 -10.66032 -10.57020 -10.37567 -10.13460 -9.96872 -9.85661 -9.59765 -9.24657 -9.15874 -8.80208 -8.40513 -8.22838 -6.65695 -5.78356 -3.31217 2.90620 3.19175 3.35022 3.37559 3.42404 3.45896 3.82119 4.00479 4.44693 4.74393 4.79791 4.95543 5.11142 5.19088 5.24710 5.31720 5.37407 5.45940 5.46272 5.46512 5.55056 5.68916 5.72383 5.81547 5.86717 5.88535 5.93044 5.98585 6.02740 6.10034 6.15090 6.16689 6.20307 6.26281 6.26933 6.38880 6.50268 6.55923 6.72641 6.80429 7.04553 7.05729 7.22285 7.38885 7.80759 7.90257 8.06082 8.32287 8.49278 8.85166 9.13095 9.72542 10.34403 11.22594 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.005929 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.937490 B = 4721.304872 C = 5743.767605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.081 3.919 3 H 0.089 0.911 4 O -0.376 6.376 5 C 0.048 3.952 6 C -0.135 4.135 7 C -0.149 4.149 8 H 0.126 0.874 9 C 0.530 3.470 10 O -0.559 6.559 11 N -0.612 5.612 12 C 0.127 3.873 13 C -0.156 4.156 14 C 0.523 3.477 15 O -0.522 6.522 16 N -0.726 5.726 17 C 0.085 3.915 18 C 0.128 3.872 19 N -0.583 5.583 20 C -0.227 4.227 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.903 5.903 24 Si 0.897 3.103 25 H -0.289 1.289 26 H -0.293 1.293 27 H -0.279 1.279 28 C 0.161 3.839 29 C 0.100 3.900 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.394 0.606 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.037 0.963 45 H 0.056 0.944 46 H 0.252 0.748 47 H 0.022 0.978 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 9.116 4.418 10.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.107 0.893 4 O -0.295 6.295 5 C -0.029 4.029 6 C -0.173 4.173 7 C -0.170 4.170 8 H 0.144 0.856 9 C 0.318 3.682 10 O -0.439 6.439 11 N -0.345 5.345 12 C 0.003 3.997 13 C -0.198 4.198 14 C 0.309 3.691 15 O -0.397 6.397 16 N -0.379 5.379 17 C -0.042 4.042 18 C 0.000 4.000 19 N -0.306 5.306 20 C -0.356 4.356 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.548 5.548 24 Si 0.727 3.273 25 H -0.216 1.216 26 H -0.219 1.219 27 H -0.205 1.205 28 C 0.035 3.965 29 C -0.021 4.021 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.228 0.772 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.838 9.006 4.288 10.010 hybrid contribution 0.672 -0.475 -0.445 0.936 sum -0.165 8.531 3.843 9.358 Atomic orbital electron populations 1.21904 0.93713 1.02807 1.02112 1.22775 0.94828 0.96861 0.83209 0.89335 1.88823 1.39607 1.67882 1.33237 1.23550 0.87777 0.96075 0.95508 1.23038 1.00542 0.98180 0.95505 1.22981 1.00339 0.96239 0.97437 0.85614 1.20188 0.79830 0.87302 0.80861 1.90603 1.60730 1.20028 1.72588 1.49089 1.46536 1.19128 1.19745 1.21549 0.91501 0.93841 0.92801 1.22110 0.99723 0.98971 0.98990 1.20526 0.82939 0.82080 0.83566 1.90711 1.74655 1.39664 1.34660 1.46341 1.06643 1.46368 1.38582 1.22440 0.93822 0.92778 0.95137 1.21451 0.89845 0.92546 0.96186 1.44349 1.29435 1.42968 1.13879 1.18943 1.26542 0.99506 0.90650 0.91812 1.25043 1.01357 0.96719 0.96323 1.69948 1.44289 1.31146 1.09413 0.86354 0.81442 0.79870 0.79586 1.21597 1.21908 1.20480 1.21613 0.91032 0.95307 0.88518 1.22916 0.99079 0.79111 1.01009 0.91762 0.92030 0.91429 0.92569 0.89018 0.88839 0.89897 0.90014 0.89580 0.90221 0.88467 0.77194 0.92927 0.89329 0.94423 0.92534 0.93806 0.95974 0.91923 0.87813 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.36 37.16 0.35 -1.54 16 2 C 0.08 1.21 3.67 -26.15 -0.10 1.12 16 3 H 0.09 1.44 6.44 -51.93 -0.33 1.11 16 4 O -0.38 -5.87 11.19 -35.23 -0.39 -6.26 16 5 C 0.05 0.66 7.72 38.21 0.29 0.95 16 6 C -0.13 -2.02 5.94 -24.72 -0.15 -2.17 16 7 C -0.15 -2.32 2.08 -90.24 -0.19 -2.51 16 8 H 0.13 2.06 4.14 -51.93 -0.22 1.85 16 9 C 0.53 8.90 6.26 -10.98 -0.07 8.83 16 10 O -0.56 -10.27 15.11 5.56 0.08 -10.19 16 11 N -0.61 -10.32 2.40 -171.38 -0.41 -10.73 16 12 C 0.13 1.94 5.63 -3.34 -0.02 1.92 16 13 C -0.16 -2.23 6.16 -27.89 -0.17 -2.40 16 14 C 0.52 9.00 4.84 -10.39 -0.05 8.95 16 15 O -0.52 -11.14 15.58 5.56 0.09 -11.05 16 16 N -0.73 -11.10 4.25 -59.16 -0.25 -11.35 16 17 C 0.08 1.36 6.64 -3.41 -0.02 1.33 16 18 C 0.13 2.31 6.08 -3.37 -0.02 2.29 16 19 N -0.58 -12.66 2.37 -170.95 -0.41 -13.07 16 20 C -0.23 -5.65 8.55 -15.06 -0.13 -5.78 16 21 H 0.06 1.69 7.86 -52.48 -0.41 1.28 16 22 C 0.00 0.10 4.38 -17.43 -0.08 0.02 16 23 N -0.90 -22.96 10.17 55.49 0.56 -22.39 16 24 Si 0.90 21.02 29.57 -169.99 -5.03 16.00 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.16 3.21 2.64 -3.12 -0.01 3.21 16 29 C 0.10 1.98 3.29 -3.13 -0.01 1.97 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.08 1.29 6.54 -51.93 -0.34 0.95 16 37 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 38 H 0.09 1.37 7.77 -51.93 -0.40 0.96 16 39 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 40 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.39 5.19 8.74 -40.82 -0.36 4.84 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.69 6.83 -51.93 -0.35 1.33 16 44 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 45 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 46 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 47 H 0.02 0.41 5.36 -51.93 -0.28 0.13 16 48 H 0.06 1.43 6.17 -51.93 -0.32 1.11 16 49 H 0.10 2.40 5.05 -51.93 -0.26 2.14 16 50 H 0.07 1.48 5.88 -51.93 -0.31 1.18 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -28.92 371.07 -8.27 -37.18 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.74 Total: 10.09 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: -0.36 Total: 16.17 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.50 Total: -57.54 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.22 Total: -27.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.92 -8.27 -37.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.153 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds