Wall clock time and date at job start Tue Mar 31 2020 23:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.99076 * 2 1 4 4 O 1.43748 * 109.87476 * 121.08146 * 2 1 3 5 5 C 1.44379 * 106.97130 * 145.93901 * 4 2 1 6 6 C 1.54995 * 103.49198 * 319.93844 * 5 4 2 7 7 C 1.54097 * 109.87583 * 238.91425 * 2 1 3 8 8 H 1.08995 * 110.49285 * 357.35222 * 7 2 1 9 9 C 1.50700 * 110.48423 * 119.87450 * 7 2 1 10 10 O 1.21277 * 120.00461 * 3.73477 * 9 7 2 11 11 N 1.34778 * 119.99461 * 183.74327 * 9 7 2 12 12 C 1.47773 * 121.65885 * 184.92461 * 11 9 7 13 13 C 1.53003 * 108.77884 * 272.65783 * 12 11 9 14 14 C 1.50692 * 109.49140 * 302.42293 * 13 12 11 15 15 O 1.21278 * 120.45719 * 292.36207 * 14 13 12 16 16 N 1.36108 * 119.09664 * 112.38678 * 14 13 12 17 17 C 1.47652 * 116.60045 * 179.54112 * 16 14 13 18 18 C 1.52994 * 108.86652 * 104.09827 * 17 16 14 19 19 N 1.47737 * 108.82950 * 303.84314 * 18 17 16 20 20 C 1.36933 * 121.64079 * 273.19688 * 19 18 17 21 21 H 1.08005 * 120.00356 * 30.56312 * 20 19 18 22 22 C 1.38816 * 120.00002 * 210.56223 * 20 19 18 23 23 N 1.31613 * 120.00017 * 12.25833 * 22 20 19 24 24 Si 1.86805 * 119.99924 * 192.26121 * 22 20 19 25 25 H 1.48499 * 109.47241 * 90.00011 * 24 22 20 26 26 H 1.48500 * 109.46752 * 209.99973 * 24 22 20 27 27 H 1.48500 * 109.47109 * 330.00173 * 24 22 20 28 28 C 1.47769 * 116.72035 * 93.17643 * 19 18 17 29 29 C 1.47745 * 121.66437 * 4.63263 * 11 9 7 30 30 H 1.08998 * 109.47293 * 181.08699 * 1 2 3 31 31 H 1.09003 * 109.46561 * 301.08728 * 1 2 3 32 32 H 1.08994 * 109.47086 * 61.08206 * 1 2 3 33 33 H 1.09008 * 110.62092 * 78.43714 * 5 4 2 34 34 H 1.09002 * 110.62105 * 201.28144 * 5 4 2 35 35 H 1.09003 * 110.90950 * 278.82756 * 6 5 4 36 36 H 1.08996 * 110.91110 * 155.22280 * 6 5 4 37 37 H 1.08994 * 109.58343 * 32.44500 * 12 11 9 38 38 H 1.08997 * 109.58546 * 152.72962 * 12 11 9 39 39 H 1.08995 * 109.46583 * 62.43455 * 13 12 11 40 40 H 1.09004 * 109.46437 * 182.42112 * 13 12 11 41 41 H 0.97004 * 121.70210 * 359.52105 * 16 14 13 42 42 H 1.09006 * 109.57454 * 223.91275 * 17 16 14 43 43 H 1.09000 * 109.57388 * 344.28520 * 17 16 14 44 44 H 1.08991 * 109.57714 * 63.64968 * 18 17 16 45 45 H 1.09002 * 109.57846 * 183.90729 * 18 17 16 46 46 H 0.96997 * 119.99990 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.57865 * 343.36764 * 28 19 18 48 48 H 1.09005 * 109.58185 * 103.76967 * 28 19 18 49 49 H 1.09007 * 109.58165 * 172.51827 * 29 11 9 50 50 H 1.08992 * 109.58763 * 292.93613 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1578 5 6 3.2379 -1.3641 0.7648 6 6 2.9196 -1.8915 -0.6574 7 6 2.0540 -0.7482 -1.2411 8 1 1.2246 -1.1529 -1.8210 9 6 2.8946 0.1675 -2.0931 10 8 3.1267 1.2983 -1.7215 11 7 3.3883 -0.2704 -3.2683 12 6 4.3035 0.5570 -4.0816 13 6 3.4713 1.4570 -4.9974 14 6 2.5732 0.6059 -5.8576 15 8 3.0435 -0.1163 -6.7109 16 7 1.2270 0.6592 -5.6644 17 6 0.3987 -0.1890 -6.5443 18 6 -0.0784 -1.4072 -5.7511 19 7 1.0996 -2.1110 -5.2038 20 6 1.7704 -3.0596 -5.9285 21 1 1.8081 -2.9897 -7.0056 22 6 2.4022 -4.1111 -5.2788 23 7 2.1616 -4.3372 -4.0048 24 14 3.5939 -5.2053 -6.2128 25 1 4.9651 -4.6447 -6.1100 26 1 3.5725 -6.5710 -5.6301 27 1 3.1913 -5.2699 -7.6408 28 6 1.5186 -1.7407 -3.8360 29 6 3.0465 -1.6040 -3.8045 30 1 -0.3634 -1.0274 0.0195 31 1 -0.3632 0.5307 0.8801 32 1 -0.3633 0.4969 -0.8995 33 1 4.0686 -0.6588 0.7357 34 1 3.4600 -2.1890 1.4418 35 1 2.3540 -2.8220 -0.6098 36 1 3.8332 -2.0225 -1.2373 37 1 4.9194 1.1725 -3.4261 38 1 4.9427 -0.0889 -4.6834 39 1 2.8637 2.1292 -4.3916 40 1 4.1359 2.0418 -5.6334 41 1 0.8319 1.2254 -4.9830 42 1 -0.4632 0.3795 -6.8939 43 1 0.9915 -0.5184 -7.3977 44 1 -0.7218 -1.0817 -4.9338 45 1 -0.6335 -2.0766 -6.4084 46 1 2.6028 -5.0722 -3.5509 47 1 1.0599 -0.7919 -3.5577 48 1 1.2094 -2.5173 -3.1364 49 1 3.4404 -1.7030 -4.8161 50 1 3.4761 -2.3757 -3.1659 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071010289.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:49 Heat of formation + Delta-G solvation = -93.234078 kcal Electronic energy + Delta-G solvation = -33914.997874 eV Core-core repulsion = 29749.878250 eV Total energy + Delta-G solvation = -4165.119624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.88962 -40.56253 -39.32255 -37.88947 -36.67158 -35.22834 -33.97307 -33.02774 -32.50213 -31.76786 -30.63188 -28.29678 -27.64204 -26.08131 -25.12762 -24.10144 -23.22749 -22.11747 -21.85260 -21.21704 -20.05777 -18.68160 -18.14000 -17.88090 -17.42104 -17.14632 -16.86845 -16.45235 -16.36076 -16.22796 -15.95586 -15.51229 -15.34785 -15.03989 -14.74806 -14.51588 -14.26809 -14.15080 -14.01737 -13.72895 -13.46571 -13.33411 -13.14416 -13.08915 -12.95268 -12.77007 -12.66376 -12.49817 -12.36067 -12.27911 -12.10983 -11.89486 -11.86965 -11.79970 -11.66776 -11.51139 -10.89425 -10.64791 -10.56625 -10.50842 -9.90076 -9.66863 -8.45891 -7.69821 -5.23443 1.43535 1.48799 1.53663 1.53925 1.84048 2.00214 2.53169 2.58421 2.86037 3.37785 3.42571 3.53785 3.77935 3.79821 3.89027 4.01342 4.06701 4.23104 4.26524 4.29705 4.41839 4.45200 4.50645 4.56991 4.59651 4.64779 4.67158 4.72922 4.76351 4.78497 4.80725 4.83774 4.94197 4.98207 5.04573 5.07330 5.12641 5.25780 5.30070 5.32335 5.61200 5.69536 5.71633 5.80549 5.90856 6.39570 6.50802 6.81327 7.10654 7.25646 7.55442 7.89570 8.47501 9.25820 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.005929 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.937490 B = 4721.304872 C = 5743.767605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.078 0.922 4 O -0.387 6.387 5 C 0.050 3.950 6 C -0.132 4.132 7 C -0.146 4.146 8 H 0.119 0.881 9 C 0.534 3.466 10 O -0.569 6.569 11 N -0.610 5.610 12 C 0.123 3.877 13 C -0.146 4.146 14 C 0.518 3.482 15 O -0.568 6.568 16 N -0.716 5.716 17 C 0.095 3.905 18 C 0.122 3.878 19 N -0.596 5.596 20 C -0.222 4.222 21 H 0.042 0.958 22 C -0.028 4.028 23 N -0.912 5.912 24 Si 0.934 3.066 25 H -0.296 1.296 26 H -0.294 1.294 27 H -0.283 1.283 28 C 0.177 3.823 29 C 0.125 3.875 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.409 0.591 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.247 0.753 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 10.850 5.306 12.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.096 0.904 4 O -0.307 6.307 5 C -0.026 4.026 6 C -0.170 4.170 7 C -0.167 4.167 8 H 0.137 0.863 9 C 0.323 3.677 10 O -0.450 6.450 11 N -0.342 5.342 12 C 0.000 4.000 13 C -0.187 4.187 14 C 0.305 3.695 15 O -0.447 6.447 16 N -0.369 5.369 17 C -0.031 4.031 18 C -0.004 4.004 19 N -0.319 5.319 20 C -0.353 4.353 21 H 0.060 0.940 22 C -0.225 4.225 23 N -0.558 5.558 24 Si 0.765 3.235 25 H -0.223 1.223 26 H -0.220 1.220 27 H -0.209 1.209 28 C 0.052 3.948 29 C 0.002 3.998 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.245 0.755 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.090 0.910 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.673 10.782 5.189 12.082 hybrid contribution 0.911 -0.969 -0.746 1.524 sum -0.763 9.814 4.442 10.799 Atomic orbital electron populations 1.21905 0.91983 1.03044 1.03297 1.22776 0.96203 0.95931 0.82565 0.90412 1.88815 1.40200 1.68026 1.33620 1.23635 0.87273 0.96644 0.95067 1.22982 0.99911 0.97823 0.96310 1.22954 0.99941 0.96246 0.97599 0.86308 1.20300 0.79620 0.87198 0.80562 1.90602 1.61229 1.20478 1.72656 1.49000 1.46857 1.18281 1.20100 1.21666 0.91508 0.93810 0.93001 1.22074 0.99574 0.98401 0.98682 1.21039 0.83658 0.81656 0.83142 1.90703 1.75504 1.41733 1.36726 1.46287 1.06178 1.45886 1.38572 1.22234 0.94552 0.92607 0.93733 1.21643 0.88906 0.92907 0.96973 1.44493 1.30403 1.42861 1.14180 1.18815 1.26534 0.99979 0.89966 0.93990 1.25347 1.02518 0.97703 0.96918 1.70019 1.44814 1.31321 1.09629 0.85781 0.80138 0.78894 0.78686 1.22347 1.22029 1.20905 1.21404 0.91135 0.95129 0.87177 1.22388 0.98570 0.80136 0.98680 0.91971 0.90848 0.90294 0.92429 0.86821 0.89473 0.90825 0.88406 0.90623 0.88751 0.86184 0.75481 0.88779 0.92549 0.92210 0.93121 0.94286 0.94113 0.94376 0.90998 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.36 71.98 0.67 -2.70 16 2 C 0.08 2.34 3.67 30.97 0.11 2.45 16 3 H 0.08 2.39 6.44 -2.39 -0.02 2.37 16 4 O -0.39 -11.40 11.19 -148.98 -1.67 -13.07 16 5 C 0.05 1.31 7.72 72.66 0.56 1.87 16 6 C -0.13 -3.89 5.94 31.90 0.19 -3.70 16 7 C -0.15 -4.39 2.08 -10.55 -0.02 -4.41 16 8 H 0.12 3.76 4.14 -2.39 -0.01 3.75 16 9 C 0.53 17.12 6.26 87.66 0.55 17.66 16 10 O -0.57 -19.63 15.11 -3.02 -0.05 -19.67 16 11 N -0.61 -19.98 2.40 -814.53 -1.95 -21.94 16 12 C 0.12 3.61 5.63 86.14 0.49 4.09 16 13 C -0.15 -3.85 6.16 29.85 0.18 -3.66 16 14 C 0.52 17.17 4.84 87.44 0.42 17.59 16 15 O -0.57 -24.38 15.58 -3.02 -0.05 -24.43 16 16 N -0.72 -20.30 4.25 -458.71 -1.95 -22.25 16 17 C 0.10 2.88 6.64 86.16 0.57 3.45 16 18 C 0.12 4.26 6.08 86.14 0.52 4.78 16 19 N -0.60 -25.79 2.37 -694.75 -1.65 -27.43 16 20 C -0.22 -11.27 8.55 84.04 0.72 -10.55 16 21 H 0.04 2.30 7.86 -2.91 -0.02 2.28 16 22 C -0.03 -1.44 4.38 84.86 0.37 -1.07 16 23 N -0.91 -46.98 10.17 21.65 0.22 -46.76 16 24 Si 0.93 43.98 29.57 68.60 2.03 46.01 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 28 C 0.18 6.99 2.64 86.28 0.23 7.22 16 29 C 0.12 4.95 3.29 86.29 0.28 5.23 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.11 2.45 8.14 -2.39 -0.02 2.44 16 35 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.07 2.29 6.54 -2.39 -0.02 2.28 16 37 H 0.10 2.58 7.72 -2.39 -0.02 2.57 16 38 H 0.08 2.39 7.77 -2.39 -0.02 2.37 16 39 H 0.09 2.23 7.95 -2.39 -0.02 2.21 16 40 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 41 H 0.41 9.38 8.74 -92.71 -0.81 8.57 16 42 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.06 2.13 6.83 -2.39 -0.02 2.11 16 44 H 0.06 1.82 7.87 -2.39 -0.02 1.81 16 45 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 46 H 0.25 12.69 8.31 -92.71 -0.77 11.92 16 47 H 0.04 1.44 5.36 -2.39 -0.01 1.43 16 48 H 0.04 1.74 6.17 -2.38 -0.01 1.73 16 49 H 0.07 3.39 5.05 -2.38 -0.01 3.38 16 50 H 0.05 2.29 5.88 -2.39 -0.01 2.28 16 Total: -1.00 -62.75 371.07 0.95 -61.80 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: 0.16 Total: 29.48 kcal Atomic # 6 Polarization: 32.39 SS G_CDS: 5.85 Total: 38.25 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -5.33 Total: -118.38 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -1.76 Total: -57.17 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -62.75 0.95 -61.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010289.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.432 kcal (2) G-P(sol) polarization free energy of solvation -62.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds