Wall clock time and date at job start Tue Mar 31 2020 23:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.87459 * 2 1 4 4 O 1.43742 * 110.00389 * 238.91434 * 2 1 3 5 5 C 1.44381 * 106.97679 * 213.99197 * 4 2 1 6 6 C 1.54998 * 103.48960 * 40.06383 * 5 4 2 7 7 C 1.54103 * 109.88102 * 121.00933 * 2 1 3 8 8 H 1.09005 * 110.48054 * 2.92351 * 7 2 1 9 9 C 1.50694 * 110.48876 * 240.41478 * 7 2 1 10 10 O 1.21278 * 120.00364 * 359.97438 * 9 7 2 11 11 N 1.34783 * 120.00045 * 179.97438 * 9 7 2 12 12 C 1.47755 * 121.65659 * 359.97438 * 11 9 7 13 13 C 1.52974 * 108.82610 * 270.99251 * 12 11 9 14 14 C 1.50707 * 109.53169 * 306.58160 * 13 12 11 15 15 O 1.21284 * 120.46242 * 295.54435 * 14 13 12 16 16 N 1.36133 * 119.07344 * 115.53146 * 14 13 12 17 17 C 1.47650 * 116.57734 * 176.88628 * 16 14 13 18 18 C 1.52983 * 108.92157 * 97.49278 * 17 16 14 19 19 N 1.47744 * 108.81708 * 305.18107 * 18 17 16 20 20 C 1.36935 * 121.65405 * 275.71505 * 19 18 17 21 21 H 1.08005 * 119.99694 * 31.29695 * 20 19 18 22 22 C 1.38810 * 120.00020 * 211.28940 * 20 19 18 23 23 N 1.31619 * 120.00173 * 11.74463 * 22 20 19 24 24 Si 1.86807 * 119.99949 * 191.73861 * 22 20 19 25 25 H 1.48496 * 109.46848 * 90.00145 * 24 22 20 26 26 H 1.48500 * 109.47216 * 210.00232 * 24 22 20 27 27 H 1.48504 * 109.46892 * 330.00505 * 24 22 20 28 28 C 1.47764 * 116.68850 * 95.70288 * 19 18 17 29 29 C 1.47741 * 121.65884 * 179.71477 * 11 9 7 30 30 H 1.09006 * 109.47162 * 299.30253 * 1 2 3 31 31 H 1.09000 * 109.46911 * 59.29336 * 1 2 3 32 32 H 1.08996 * 109.47399 * 179.29986 * 1 2 3 33 33 H 1.08995 * 110.61780 * 281.55840 * 5 4 2 34 34 H 1.09007 * 110.74854 * 158.62535 * 5 4 2 35 35 H 1.09000 * 110.90640 * 204.78040 * 6 5 4 36 36 H 1.08999 * 110.93923 * 81.18172 * 6 5 4 37 37 H 1.09004 * 109.57979 * 30.78950 * 12 11 9 38 38 H 1.08998 * 109.58139 * 151.19232 * 12 11 9 39 39 H 1.09002 * 109.46017 * 66.59460 * 13 12 11 40 40 H 1.08996 * 109.46384 * 186.57622 * 13 12 11 41 41 H 0.97009 * 121.71156 * 356.89679 * 16 14 13 42 42 H 1.09005 * 109.56081 * 217.32163 * 17 16 14 43 43 H 1.08997 * 109.56380 * 337.54669 * 17 16 14 44 44 H 1.08997 * 109.57545 * 64.97834 * 18 17 16 45 45 H 1.08991 * 109.58093 * 185.24599 * 18 17 16 46 46 H 0.97004 * 120.00136 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.57804 * 341.72195 * 28 19 18 48 48 H 1.08997 * 109.58297 * 101.98775 * 28 19 18 49 49 H 1.09000 * 109.58257 * 172.19845 * 29 11 9 50 50 H 1.09002 * 109.57721 * 292.59778 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6974 -1.1567 5 6 3.2417 -1.3609 -0.7620 6 6 2.9226 -1.8883 0.6602 7 6 2.0540 -0.7466 1.2421 8 1 1.2247 -1.1547 1.8199 9 6 2.8888 0.1721 2.0965 10 8 3.0612 1.3241 1.7589 11 7 3.4438 -0.2865 3.2359 12 6 3.2572 -1.6826 3.6822 13 6 1.9970 -1.7605 4.5459 14 6 2.0815 -0.7420 5.6534 15 8 2.9383 -0.8315 6.5071 16 7 1.1828 0.2801 5.6821 17 6 1.2711 1.2054 6.8293 18 6 2.0706 2.4405 6.4101 19 7 3.3785 2.0040 5.8794 20 6 4.4401 1.7483 6.7055 21 1 4.2695 1.3689 7.7023 22 6 5.7355 1.9764 6.2620 23 7 5.9413 2.6484 5.1491 24 14 7.1868 1.3299 7.2446 25 1 7.5322 -0.0363 6.7763 26 1 8.3535 2.2284 7.0537 27 1 6.8280 1.2835 8.6849 28 6 3.4840 1.8569 4.4128 29 6 4.2737 0.5802 4.0978 30 1 -0.3634 0.5030 0.8962 31 1 -0.3633 0.5248 -0.8836 32 1 -0.3634 -1.0275 -0.0126 33 1 4.0707 -0.6539 -0.7321 34 1 3.4675 -2.1872 -1.4361 35 1 3.8358 -2.0171 1.2412 36 1 2.3592 -2.8202 0.6127 37 1 3.1454 -2.3319 2.8137 38 1 4.1211 -1.9976 4.2674 39 1 1.1214 -1.5555 3.9300 40 1 1.9128 -2.7584 4.9762 41 1 0.5183 0.3946 4.9846 42 1 0.2685 1.5058 7.1339 43 1 1.7719 0.7093 7.6606 44 1 1.5257 2.9834 5.6377 45 1 2.2222 3.0879 7.2737 46 1 6.8466 2.8081 4.8393 47 1 2.4861 1.7867 3.9801 48 1 4.0032 2.7197 3.9955 49 1 4.5050 0.0582 5.0263 50 1 5.1981 0.8337 3.5789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071010290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:54 Heat of formation + Delta-G solvation = -69.747141 kcal Electronic energy + Delta-G solvation = -33592.091121 eV Core-core repulsion = 29427.989967 eV Total energy + Delta-G solvation = -4164.101154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.64688 -39.24483 -38.06735 -35.81565 -35.49369 -33.74999 -32.52264 -31.57338 -31.32263 -30.42789 -29.06566 -27.02096 -26.03012 -24.55044 -23.73590 -22.57347 -22.31350 -20.88584 -20.17487 -19.78261 -18.78380 -17.15471 -16.64031 -16.46491 -16.11726 -15.75714 -15.55294 -15.40404 -14.93839 -14.71511 -14.43701 -13.95033 -13.71642 -13.42302 -13.34876 -13.26937 -13.17872 -12.80319 -12.60375 -12.47880 -12.45971 -12.23483 -11.76692 -11.60241 -11.50842 -11.35899 -11.18435 -11.13909 -10.97534 -10.90759 -10.77788 -10.48430 -10.24558 -9.97197 -9.86494 -9.69225 -9.67725 -9.14098 -9.10529 -8.67902 -8.28381 -8.09953 -6.44858 -5.57908 -3.12180 2.94173 3.22148 3.40872 3.44888 3.51493 3.54142 3.76059 3.84054 4.39179 4.52494 4.59827 4.66140 4.84657 4.92439 5.05225 5.15130 5.21723 5.30842 5.34439 5.43099 5.46909 5.52855 5.54692 5.58756 5.60903 5.68351 5.72009 5.79426 5.87107 6.01471 6.03078 6.14369 6.14801 6.21793 6.50622 6.59763 6.60799 6.77627 6.84071 6.93199 6.99731 7.13079 7.52527 7.75054 7.98224 8.08673 8.11204 8.49782 8.61602 8.92808 9.32880 9.92125 10.55909 11.42065 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.004737 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.735674 B = 5909.814769 C = 6533.743669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 H 0.096 0.904 4 O -0.375 6.375 5 C 0.048 3.952 6 C -0.149 4.149 7 C -0.143 4.143 8 H 0.105 0.895 9 C 0.517 3.483 10 O -0.527 6.527 11 N -0.612 5.612 12 C 0.108 3.892 13 C -0.160 4.160 14 C 0.518 3.482 15 O -0.506 6.506 16 N -0.728 5.728 17 C 0.089 3.911 18 C 0.127 3.873 19 N -0.586 5.586 20 C -0.218 4.218 21 H 0.062 0.938 22 C 0.000 4.000 23 N -0.901 5.901 24 Si 0.895 3.105 25 H -0.290 1.290 26 H -0.294 1.294 27 H -0.280 1.280 28 C 0.178 3.822 29 C 0.114 3.886 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.392 0.608 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.037 0.963 45 H 0.052 0.948 46 H 0.250 0.750 47 H 0.023 0.977 48 H 0.055 0.945 49 H 0.107 0.893 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.027 -11.200 -7.756 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.022 3.978 3 H 0.113 0.887 4 O -0.294 6.294 5 C -0.028 4.028 6 C -0.187 4.187 7 C -0.164 4.164 8 H 0.123 0.877 9 C 0.304 3.696 10 O -0.403 6.403 11 N -0.345 5.345 12 C -0.016 4.016 13 C -0.201 4.201 14 C 0.303 3.697 15 O -0.379 6.379 16 N -0.381 5.381 17 C -0.037 4.037 18 C -0.001 4.001 19 N -0.309 5.309 20 C -0.349 4.349 21 H 0.080 0.920 22 C -0.198 4.198 23 N -0.546 5.546 24 Si 0.726 3.274 25 H -0.217 1.217 26 H -0.221 1.221 27 H -0.206 1.206 28 C 0.053 3.947 29 C -0.006 4.006 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.225 0.775 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.125 0.875 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.218 -10.562 -7.576 17.170 hybrid contribution 0.638 -0.470 0.387 0.882 sum -10.580 -11.032 -7.189 16.892 Atomic orbital electron populations 1.21900 0.93608 1.02313 1.02627 1.22792 0.94838 0.97450 0.82746 0.88675 1.88837 1.39316 1.68006 1.33284 1.23516 0.88234 0.96452 0.94620 1.23246 1.00514 0.97797 0.97101 1.22761 0.99270 0.96573 0.97831 0.87706 1.20007 0.80429 0.88118 0.81059 1.90716 1.60368 1.18352 1.70885 1.49143 1.50944 1.11757 1.22703 1.21902 0.97577 0.84079 0.98067 1.22201 0.99958 1.00273 0.97704 1.20375 0.81157 0.81987 0.86157 1.90764 1.32758 1.74726 1.39646 1.46298 1.35769 1.29227 1.26822 1.22386 0.98742 0.93114 0.89492 1.21412 0.88132 0.93077 0.97494 1.44452 1.06847 1.77619 1.01946 1.18870 0.84243 1.34657 0.97090 0.92003 1.25114 0.97645 0.99124 0.97919 1.70028 1.19686 1.41720 1.23149 0.86378 0.82816 0.78104 0.80077 1.21750 1.22072 1.20553 1.21173 0.94530 0.95606 0.83440 1.22750 0.92236 0.92352 0.93236 0.91210 0.91756 0.92212 0.91908 0.88883 0.89319 0.89554 0.89762 0.89217 0.90923 0.88253 0.77501 0.92910 0.89881 0.94444 0.93023 0.93958 0.95876 0.92668 0.87542 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.37 37.15 0.35 -1.15 16 2 C 0.08 1.02 3.66 -26.16 -0.10 0.93 16 3 H 0.10 1.50 6.44 -51.93 -0.33 1.17 16 4 O -0.38 -4.97 11.19 -35.23 -0.39 -5.37 16 5 C 0.05 0.54 7.72 38.21 0.29 0.83 16 6 C -0.15 -1.47 5.26 -24.72 -0.13 -1.60 16 7 C -0.14 -1.70 2.28 -90.24 -0.21 -1.90 16 8 H 0.10 1.02 6.73 -51.93 -0.35 0.67 16 9 C 0.52 8.55 6.35 -10.99 -0.07 8.48 16 10 O -0.53 -11.00 13.82 5.56 0.08 -10.93 16 11 N -0.61 -10.33 2.37 -171.45 -0.41 -10.73 16 12 C 0.11 1.40 5.18 -3.37 -0.02 1.38 16 13 C -0.16 -1.90 6.20 -27.89 -0.17 -2.08 16 14 C 0.52 8.63 4.52 -10.37 -0.05 8.58 16 15 O -0.51 -10.80 13.58 5.55 0.08 -10.73 16 16 N -0.73 -11.05 4.58 -59.15 -0.27 -11.32 16 17 C 0.09 1.48 6.56 -3.42 -0.02 1.46 16 18 C 0.13 2.54 6.09 -3.37 -0.02 2.51 16 19 N -0.59 -14.13 1.82 -170.99 -0.31 -14.44 16 20 C -0.22 -5.88 7.44 -15.06 -0.11 -5.99 16 21 H 0.06 1.74 7.86 -52.48 -0.41 1.33 16 22 C 0.00 0.00 4.29 -17.43 -0.07 -0.07 16 23 N -0.90 -26.06 10.22 55.49 0.57 -25.49 16 24 Si 0.90 22.37 29.57 -169.99 -5.03 17.35 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 C 0.18 4.25 3.49 -3.15 -0.01 4.24 16 29 C 0.11 2.57 3.76 -3.16 -0.01 2.56 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.89 6.29 -51.93 -0.33 0.57 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.81 4.65 -51.93 -0.24 0.57 16 38 H 0.09 1.30 7.81 -51.93 -0.41 0.89 16 39 H 0.07 0.69 7.00 -51.93 -0.36 0.32 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.39 4.92 8.73 -40.82 -0.36 4.56 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.60 7.04 -51.93 -0.37 1.24 16 44 H 0.04 0.71 7.83 -51.93 -0.41 0.31 16 45 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 46 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.02 0.52 5.91 -51.93 -0.31 0.22 16 48 H 0.06 1.59 6.92 -51.93 -0.36 1.23 16 49 H 0.11 2.64 4.33 -51.93 -0.23 2.42 16 50 H 0.06 1.53 7.61 -51.93 -0.40 1.13 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -33.68 367.35 -8.29 -41.97 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.79 Total: 5.98 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: -0.35 Total: 18.18 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.42 Total: -61.99 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.24 Total: -27.02 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.68 -8.29 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.780 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds