Wall clock time and date at job start Tue Mar 31 2020 23:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.87459 * 2 1 4 4 O 1.43742 * 110.00389 * 238.91434 * 2 1 3 5 5 C 1.44381 * 106.97679 * 213.99197 * 4 2 1 6 6 C 1.54998 * 103.48960 * 40.06383 * 5 4 2 7 7 C 1.54103 * 109.88102 * 121.00933 * 2 1 3 8 8 H 1.09005 * 110.48054 * 2.92351 * 7 2 1 9 9 C 1.50694 * 110.48876 * 240.41478 * 7 2 1 10 10 O 1.21278 * 120.00364 * 359.97438 * 9 7 2 11 11 N 1.34783 * 120.00045 * 179.97438 * 9 7 2 12 12 C 1.47755 * 121.65659 * 359.97438 * 11 9 7 13 13 C 1.52974 * 108.82610 * 270.99251 * 12 11 9 14 14 C 1.50707 * 109.53169 * 306.58160 * 13 12 11 15 15 O 1.21284 * 120.46242 * 295.54435 * 14 13 12 16 16 N 1.36133 * 119.07344 * 115.53146 * 14 13 12 17 17 C 1.47650 * 116.57734 * 176.88628 * 16 14 13 18 18 C 1.52983 * 108.92157 * 97.49278 * 17 16 14 19 19 N 1.47744 * 108.81708 * 305.18107 * 18 17 16 20 20 C 1.36935 * 121.65405 * 275.71505 * 19 18 17 21 21 H 1.08005 * 119.99694 * 31.29695 * 20 19 18 22 22 C 1.38810 * 120.00020 * 211.28940 * 20 19 18 23 23 N 1.31619 * 120.00173 * 11.74463 * 22 20 19 24 24 Si 1.86807 * 119.99949 * 191.73861 * 22 20 19 25 25 H 1.48496 * 109.46848 * 90.00145 * 24 22 20 26 26 H 1.48500 * 109.47216 * 210.00232 * 24 22 20 27 27 H 1.48504 * 109.46892 * 330.00505 * 24 22 20 28 28 C 1.47764 * 116.68850 * 95.70288 * 19 18 17 29 29 C 1.47741 * 121.65884 * 179.71477 * 11 9 7 30 30 H 1.09006 * 109.47162 * 299.30253 * 1 2 3 31 31 H 1.09000 * 109.46911 * 59.29336 * 1 2 3 32 32 H 1.08996 * 109.47399 * 179.29986 * 1 2 3 33 33 H 1.08995 * 110.61780 * 281.55840 * 5 4 2 34 34 H 1.09007 * 110.74854 * 158.62535 * 5 4 2 35 35 H 1.09000 * 110.90640 * 204.78040 * 6 5 4 36 36 H 1.08999 * 110.93923 * 81.18172 * 6 5 4 37 37 H 1.09004 * 109.57979 * 30.78950 * 12 11 9 38 38 H 1.08998 * 109.58139 * 151.19232 * 12 11 9 39 39 H 1.09002 * 109.46017 * 66.59460 * 13 12 11 40 40 H 1.08996 * 109.46384 * 186.57622 * 13 12 11 41 41 H 0.97009 * 121.71156 * 356.89679 * 16 14 13 42 42 H 1.09005 * 109.56081 * 217.32163 * 17 16 14 43 43 H 1.08997 * 109.56380 * 337.54669 * 17 16 14 44 44 H 1.08997 * 109.57545 * 64.97834 * 18 17 16 45 45 H 1.08991 * 109.58093 * 185.24599 * 18 17 16 46 46 H 0.97004 * 120.00136 * 179.97438 * 23 22 20 47 47 H 1.09000 * 109.57804 * 341.72195 * 28 19 18 48 48 H 1.08997 * 109.58297 * 101.98775 * 28 19 18 49 49 H 1.09000 * 109.58257 * 172.19845 * 29 11 9 50 50 H 1.09002 * 109.57721 * 292.59778 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0217 -0.6974 -1.1567 5 6 3.2417 -1.3609 -0.7620 6 6 2.9226 -1.8883 0.6602 7 6 2.0540 -0.7466 1.2421 8 1 1.2247 -1.1547 1.8199 9 6 2.8888 0.1721 2.0965 10 8 3.0612 1.3241 1.7589 11 7 3.4438 -0.2865 3.2359 12 6 3.2572 -1.6826 3.6822 13 6 1.9970 -1.7605 4.5459 14 6 2.0815 -0.7420 5.6534 15 8 2.9383 -0.8315 6.5071 16 7 1.1828 0.2801 5.6821 17 6 1.2711 1.2054 6.8293 18 6 2.0706 2.4405 6.4101 19 7 3.3785 2.0040 5.8794 20 6 4.4401 1.7483 6.7055 21 1 4.2695 1.3689 7.7023 22 6 5.7355 1.9764 6.2620 23 7 5.9413 2.6484 5.1491 24 14 7.1868 1.3299 7.2446 25 1 7.5322 -0.0363 6.7763 26 1 8.3535 2.2284 7.0537 27 1 6.8280 1.2835 8.6849 28 6 3.4840 1.8569 4.4128 29 6 4.2737 0.5802 4.0978 30 1 -0.3634 0.5030 0.8962 31 1 -0.3633 0.5248 -0.8836 32 1 -0.3634 -1.0275 -0.0126 33 1 4.0707 -0.6539 -0.7321 34 1 3.4675 -2.1872 -1.4361 35 1 3.8358 -2.0171 1.2412 36 1 2.3592 -2.8202 0.6127 37 1 3.1454 -2.3319 2.8137 38 1 4.1211 -1.9976 4.2674 39 1 1.1214 -1.5555 3.9300 40 1 1.9128 -2.7584 4.9762 41 1 0.5183 0.3946 4.9846 42 1 0.2685 1.5058 7.1339 43 1 1.7719 0.7093 7.6606 44 1 1.5257 2.9834 5.6377 45 1 2.2222 3.0879 7.2737 46 1 6.8466 2.8081 4.8393 47 1 2.4861 1.7867 3.9801 48 1 4.0032 2.7197 3.9955 49 1 4.5050 0.0582 5.0263 50 1 5.1981 0.8337 3.5789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071010290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:53 Heat of formation + Delta-G solvation = -95.101458 kcal Electronic energy + Delta-G solvation = -33593.190567 eV Core-core repulsion = 29427.989967 eV Total energy + Delta-G solvation = -4165.200600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.83793 -40.49841 -39.31479 -37.60384 -36.86300 -35.26911 -33.61344 -33.12824 -32.41328 -31.83911 -30.64553 -28.50557 -27.38732 -26.06798 -25.12692 -23.99099 -23.24113 -22.04110 -21.97548 -21.11787 -20.03262 -18.59509 -18.22950 -17.76733 -17.37654 -16.97607 -16.83050 -16.65218 -16.34286 -16.12225 -15.97762 -15.42612 -15.21683 -14.97848 -14.78753 -14.60728 -14.27321 -14.11528 -13.90525 -13.73022 -13.42863 -13.31756 -13.17103 -13.08594 -12.92199 -12.79922 -12.59830 -12.39902 -12.31506 -12.16522 -12.05659 -11.91843 -11.84302 -11.80564 -11.74822 -11.56879 -10.80659 -10.64718 -10.45559 -10.44197 -9.84731 -9.60023 -8.47432 -7.70126 -5.26843 1.40523 1.42520 1.50781 1.66091 1.93011 2.09831 2.52395 2.67044 2.87448 3.37262 3.47921 3.50202 3.69327 3.73377 3.94747 3.99328 4.08534 4.25480 4.33066 4.38412 4.43283 4.47772 4.54978 4.58103 4.64166 4.71304 4.72286 4.73680 4.77765 4.82500 4.85980 4.87125 4.96647 5.01205 5.03989 5.07125 5.17686 5.24028 5.30581 5.32233 5.67922 5.76414 5.80528 5.82533 5.92636 6.41297 6.61901 6.93098 7.20223 7.27310 7.70570 7.88856 8.48225 9.25788 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013805 B = 0.004737 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.735674 B = 5909.814769 C = 6533.743669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.053 0.947 4 O -0.387 6.387 5 C 0.039 3.961 6 C -0.142 4.142 7 C -0.129 4.129 8 H 0.146 0.854 9 C 0.514 3.486 10 O -0.580 6.580 11 N -0.611 5.611 12 C 0.104 3.896 13 C -0.150 4.150 14 C 0.506 3.494 15 O -0.560 6.560 16 N -0.720 5.720 17 C 0.103 3.897 18 C 0.119 3.881 19 N -0.597 5.597 20 C -0.205 4.205 21 H 0.049 0.951 22 C -0.046 4.046 23 N -0.929 5.929 24 Si 0.945 3.055 25 H -0.291 1.291 26 H -0.298 1.298 27 H -0.274 1.274 28 C 0.201 3.799 29 C 0.141 3.859 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.409 0.591 42 H 0.098 0.902 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.241 0.759 47 H 0.036 0.964 48 H -0.003 1.003 49 H 0.085 0.915 50 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.247 -14.705 -8.350 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 H 0.071 0.929 4 O -0.307 6.307 5 C -0.037 4.037 6 C -0.179 4.179 7 C -0.151 4.151 8 H 0.163 0.837 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.344 5.344 12 C -0.018 4.018 13 C -0.191 4.191 14 C 0.294 3.706 15 O -0.437 6.437 16 N -0.374 5.374 17 C -0.024 4.024 18 C -0.008 4.008 19 N -0.321 5.321 20 C -0.336 4.336 21 H 0.067 0.933 22 C -0.241 4.241 23 N -0.576 5.576 24 Si 0.775 3.225 25 H -0.219 1.219 26 H -0.225 1.225 27 H -0.199 1.199 28 C 0.076 3.924 29 C 0.018 3.982 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.245 0.755 42 H 0.116 0.884 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.015 0.985 49 H 0.103 0.897 50 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -14.512 -14.105 -8.176 21.826 hybrid contribution 1.600 0.682 0.541 1.821 sum -12.912 -13.423 -7.635 20.129 Atomic orbital electron populations 1.21881 0.91092 1.03935 1.02955 1.22759 0.96748 0.95562 0.83234 0.92897 1.88835 1.39920 1.68117 1.33843 1.23685 0.86816 0.96590 0.96589 1.23340 1.00625 0.98448 0.95496 1.22777 0.99657 0.95879 0.96747 0.83675 1.20936 0.79919 0.88154 0.80648 1.90714 1.62182 1.21175 1.71904 1.49042 1.50134 1.12878 1.22344 1.22199 0.97773 0.81901 0.99926 1.22240 1.00506 1.00201 0.96181 1.21324 0.80093 0.82695 0.86534 1.90749 1.34863 1.76128 1.41972 1.46280 1.35865 1.28464 1.26816 1.22065 1.00028 0.91128 0.89171 1.21657 0.86742 0.94932 0.97429 1.44593 1.07955 1.77801 1.01737 1.18845 0.85131 1.33010 0.96662 0.93282 1.25628 0.99601 1.00063 0.98830 1.70204 1.19185 1.43599 1.24613 0.85586 0.80401 0.77273 0.79241 1.21857 1.22482 1.19904 1.20739 0.94311 0.94197 0.83181 1.21962 0.91283 0.92440 0.92466 0.90375 0.92137 0.89766 0.94696 0.85968 0.89467 0.85139 0.85065 0.91079 0.87061 0.85093 0.75465 0.88382 0.92597 0.93420 0.93726 0.94937 0.94578 0.98533 0.89684 0.96774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.37 71.98 0.67 -1.70 16 2 C 0.07 1.78 3.66 30.97 0.11 1.89 16 3 H 0.05 1.72 6.44 -2.39 -0.02 1.70 16 4 O -0.39 -9.45 11.19 -148.98 -1.67 -11.12 16 5 C 0.04 0.78 7.72 72.67 0.56 1.34 16 6 C -0.14 -2.14 5.26 31.90 0.17 -1.98 16 7 C -0.13 -2.60 2.28 -10.55 -0.02 -2.63 16 8 H 0.15 1.81 6.73 -2.38 -0.02 1.79 16 9 C 0.51 16.53 6.35 87.65 0.56 17.08 16 10 O -0.58 -25.19 13.82 -3.02 -0.04 -25.23 16 11 N -0.61 -20.16 2.37 -814.72 -1.93 -22.08 16 12 C 0.10 2.37 5.18 86.13 0.45 2.81 16 13 C -0.15 -2.87 6.20 29.84 0.18 -2.68 16 14 C 0.51 15.71 4.52 87.44 0.40 16.11 16 15 O -0.56 -23.71 13.58 -3.04 -0.04 -23.75 16 16 N -0.72 -19.89 4.58 -458.68 -2.10 -21.99 16 17 C 0.10 3.24 6.56 86.15 0.57 3.80 16 18 C 0.12 4.74 6.09 86.14 0.52 5.27 16 19 N -0.60 -29.73 1.82 -694.88 -1.27 -30.99 16 20 C -0.21 -11.47 7.44 84.03 0.63 -10.85 16 21 H 0.05 2.86 7.86 -2.91 -0.02 2.83 16 22 C -0.05 -2.67 4.29 84.86 0.36 -2.30 16 23 N -0.93 -57.03 10.22 21.65 0.22 -56.81 16 24 Si 0.94 47.74 29.57 68.60 2.03 49.77 16 25 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 26 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 27 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 28 C 0.20 10.05 3.49 86.27 0.30 10.35 16 29 C 0.14 6.62 3.76 86.27 0.32 6.95 16 30 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.09 1.40 6.29 -2.39 -0.02 1.39 16 36 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 1.78 4.65 -2.38 -0.01 1.77 16 38 H 0.07 1.93 7.81 -2.39 -0.02 1.92 16 39 H 0.11 1.30 7.00 -2.39 -0.02 1.28 16 40 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.41 8.53 8.73 -92.70 -0.81 7.72 16 42 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 43 H 0.06 2.12 7.04 -2.39 -0.02 2.10 16 44 H 0.05 1.79 7.83 -2.39 -0.02 1.77 16 45 H 0.04 1.82 8.13 -2.39 -0.02 1.80 16 46 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.04 1.67 5.91 -2.39 -0.01 1.65 16 48 H 0.00 -0.20 6.92 -2.39 -0.02 -0.22 16 49 H 0.08 4.39 4.33 -2.39 -0.01 4.38 16 50 H 0.01 0.77 7.61 -2.39 -0.02 0.75 16 Total: -1.00 -83.65 367.35 1.14 -82.51 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.16 Total: 16.22 kcal Atomic # 6 Polarization: 37.70 SS G_CDS: 5.78 Total: 43.48 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -5.07 Total: -131.88 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -1.75 Total: -60.10 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -83.65 1.14 -82.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.588 kcal (2) G-P(sol) polarization free energy of solvation -83.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds