Wall clock time and date at job start Tue Mar 31 2020 23:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09006 * 110.33160 * 2 1 4 4 O 1.44422 * 110.46933 * 237.68387 * 2 1 3 5 5 C 1.44422 * 105.27713 * 200.61046 * 4 2 1 6 6 C 1.54471 * 104.80453 * 40.51025 * 5 4 2 7 7 C 1.54482 * 110.37296 * 122.24421 * 2 1 3 8 8 H 1.09000 * 110.51821 * 261.56541 * 7 2 1 9 9 C 1.50700 * 110.62761 * 24.22393 * 7 2 1 10 10 O 1.21287 * 120.00258 * 54.51085 * 9 7 2 11 11 N 1.34778 * 119.99863 * 234.52243 * 9 7 2 12 12 C 1.47741 * 121.65271 * 359.70861 * 11 9 7 13 13 C 1.53603 * 108.47646 * 87.80448 * 12 11 9 14 14 C 1.50700 * 109.49461 * 55.02071 * 13 12 11 15 15 O 1.21278 * 120.24220 * 65.63754 * 14 13 12 16 16 N 1.35511 * 119.52041 * 245.65346 * 14 13 12 17 17 C 1.47109 * 118.11110 * 179.97438 * 16 14 13 18 18 C 1.52983 * 109.17965 * 259.44134 * 17 16 14 19 19 N 1.47771 * 108.82034 * 57.75022 * 18 17 16 20 20 C 1.36940 * 121.64721 * 82.98464 * 19 18 17 21 21 H 1.07995 * 120.00362 * 328.12921 * 20 19 18 22 22 C 1.38817 * 119.99734 * 148.13265 * 20 19 18 23 23 N 1.31614 * 119.99931 * 158.53171 * 22 20 19 24 24 Si 1.86796 * 119.99984 * 338.52766 * 22 20 19 25 25 H 1.48497 * 109.47321 * 89.14245 * 24 22 20 26 26 H 1.48501 * 109.46931 * 209.14208 * 24 22 20 27 27 H 1.48508 * 109.47359 * 329.14010 * 24 22 20 28 28 C 1.47745 * 116.70551 * 263.01023 * 19 18 17 29 29 C 1.47765 * 121.65136 * 179.97438 * 11 9 7 30 30 H 1.08998 * 109.47521 * 290.61599 * 1 2 3 31 31 H 1.09002 * 109.47460 * 50.61560 * 1 2 3 32 32 H 1.09004 * 109.47380 * 170.61602 * 1 2 3 33 33 H 1.09001 * 110.37156 * 281.67862 * 5 4 2 34 34 H 1.09007 * 110.37062 * 159.34470 * 5 4 2 35 35 H 1.09005 * 110.51416 * 94.66590 * 6 5 4 36 36 H 1.09004 * 110.51106 * 217.23943 * 6 5 4 37 37 H 1.09000 * 109.58454 * 207.43700 * 12 11 9 38 38 H 1.09004 * 109.58578 * 327.85080 * 12 11 9 39 39 H 1.08996 * 109.49887 * 294.98255 * 13 12 11 40 40 H 1.09008 * 109.40267 * 174.99758 * 13 12 11 41 41 H 0.96996 * 120.94811 * 359.95380 * 16 14 13 42 42 H 1.09003 * 109.51979 * 139.52939 * 17 16 14 43 43 H 1.09005 * 109.51652 * 19.35176 * 17 16 14 44 44 H 1.08992 * 109.58183 * 297.94896 * 18 17 16 45 45 H 1.08996 * 109.58033 * 177.54647 * 18 17 16 46 46 H 0.97000 * 120.00585 * 179.97438 * 23 22 20 47 47 H 1.08992 * 109.57886 * 14.87147 * 28 19 18 48 48 H 1.09008 * 109.68620 * 254.53996 * 28 19 18 49 49 H 1.08997 * 109.59197 * 69.83704 * 29 11 9 50 50 H 1.09007 * 109.58485 * 190.11808 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 8 2.0349 -0.7233 -1.1435 5 6 3.3897 -1.0846 -0.7972 6 6 3.3193 -1.5026 0.6882 7 6 2.0677 -0.7726 1.2248 8 1 2.3411 -0.0818 2.0224 9 6 1.0468 -1.7665 1.7158 10 8 0.5825 -2.5865 0.9521 11 7 0.6494 -1.7441 3.0034 12 6 1.1952 -0.7655 3.9663 13 6 0.3433 0.5109 3.8988 14 6 -1.1040 0.1625 4.1328 15 8 -1.4631 -0.2652 5.2093 16 7 -2.0015 0.3303 3.1314 17 6 -3.4060 -0.0201 3.3934 18 6 -3.7016 -1.3952 2.7915 19 7 -2.7716 -2.3823 3.3781 20 6 -3.0172 -2.9684 4.5912 21 1 -3.5444 -2.4211 5.3585 22 6 -2.5885 -4.2661 4.8345 23 7 -2.4314 -4.6861 6.0719 24 14 -2.2347 -5.4162 3.4057 25 1 -0.8159 -5.2703 2.9924 26 1 -2.4864 -6.8184 3.8250 27 1 -3.1206 -5.0743 2.2639 28 6 -1.5633 -2.7053 2.5916 29 6 -0.3495 -2.7008 3.5234 30 1 -0.3634 0.3618 0.9618 31 1 -0.3634 0.6521 -0.7943 32 1 -0.3634 -1.0139 -0.1676 33 1 4.0536 -0.2288 -0.9195 34 1 3.7284 -1.9195 -1.4108 35 1 3.1986 -2.5824 0.7759 36 1 4.2126 -1.1747 1.2200 37 1 1.1527 -1.1808 4.9732 38 1 2.2287 -0.5353 3.7072 39 1 0.4525 0.9697 2.9161 40 1 0.6773 1.2102 4.6655 41 1 -1.7257 0.6720 2.2665 42 1 -4.0583 0.7248 2.9377 43 1 -3.5797 -0.0484 4.4691 44 1 -3.5618 -1.3588 1.7112 45 1 -4.7286 -1.6806 3.0194 46 1 -2.1321 -5.5930 6.2420 47 1 -1.4250 -1.9574 1.8109 48 1 -1.6727 -3.6906 2.1384 49 1 0.0856 -3.6995 3.5605 50 1 -0.6577 -2.3992 4.5246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071010291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:57 Heat of formation + Delta-G solvation = -59.519548 kcal Electronic energy + Delta-G solvation = -34121.298166 eV Core-core repulsion = 29957.640513 eV Total energy + Delta-G solvation = -4163.657652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.82755 -39.34720 -38.18934 -36.13716 -35.55043 -33.89120 -32.52478 -31.71918 -31.56125 -30.64205 -29.70748 -27.17067 -26.10696 -24.73004 -23.73468 -23.01405 -22.26702 -21.20459 -20.18740 -19.90489 -18.53173 -17.67753 -16.72613 -16.56716 -16.39928 -16.01131 -15.67848 -15.50944 -15.21321 -14.98345 -14.73713 -14.24907 -13.99450 -13.68659 -13.49278 -13.21001 -13.04431 -12.78624 -12.53700 -12.46546 -12.39721 -12.20356 -12.00071 -11.81560 -11.78228 -11.53711 -11.47870 -11.28802 -11.19262 -11.08601 -10.76306 -10.56000 -10.36357 -10.27655 -9.93629 -9.90269 -9.42611 -9.23246 -9.19624 -8.76572 -8.33130 -8.20597 -6.72962 -5.86156 -3.21701 2.76960 3.10625 3.26803 3.46227 3.58663 3.65183 3.67998 3.77260 4.31129 4.44697 4.58633 4.64391 4.78677 4.85765 4.89342 4.98226 5.06257 5.10487 5.15132 5.25013 5.28623 5.36033 5.46346 5.48481 5.56496 5.60182 5.67442 5.77300 5.81137 5.84392 5.84920 6.00443 6.05999 6.07460 6.20082 6.23900 6.49584 6.50380 6.60409 6.67698 6.72264 6.90102 7.04983 7.14605 7.77072 7.99867 8.08456 8.45774 8.47565 8.86065 9.05086 9.82214 10.25307 11.29882 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013106 B = 0.005591 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.837504 B = 5006.572183 C = 5744.776164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 H 0.075 0.925 4 O -0.361 6.361 5 C 0.049 3.951 6 C -0.139 4.139 7 C -0.149 4.149 8 H 0.101 0.899 9 C 0.523 3.477 10 O -0.524 6.524 11 N -0.612 5.612 12 C 0.115 3.885 13 C -0.162 4.162 14 C 0.515 3.485 15 O -0.504 6.504 16 N -0.726 5.726 17 C 0.090 3.910 18 C 0.125 3.875 19 N -0.601 5.601 20 C -0.236 4.236 21 H 0.084 0.916 22 C 0.031 3.969 23 N -0.902 5.902 24 Si 0.872 3.128 25 H -0.281 1.281 26 H -0.308 1.308 27 H -0.279 1.279 28 C 0.137 3.863 29 C 0.093 3.907 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.387 0.613 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.040 0.960 45 H 0.060 0.940 46 H 0.260 0.740 47 H 0.057 0.943 48 H 0.023 0.977 49 H 0.055 0.945 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.583 15.004 -9.963 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.093 0.907 4 O -0.279 6.279 5 C -0.028 4.028 6 C -0.178 4.178 7 C -0.170 4.170 8 H 0.119 0.881 9 C 0.310 3.690 10 O -0.400 6.400 11 N -0.346 5.346 12 C -0.009 4.009 13 C -0.203 4.203 14 C 0.300 3.700 15 O -0.377 6.377 16 N -0.380 5.380 17 C -0.036 4.036 18 C -0.002 4.002 19 N -0.326 5.326 20 C -0.364 4.364 21 H 0.101 0.899 22 C -0.168 4.168 23 N -0.545 5.545 24 Si 0.704 3.296 25 H -0.208 1.208 26 H -0.236 1.236 27 H -0.205 1.205 28 C 0.012 3.988 29 C -0.028 4.028 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.221 0.779 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.073 0.927 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.962 14.019 -9.643 20.241 hybrid contribution 0.652 -0.589 -0.960 1.302 sum 11.615 13.430 -10.603 20.681 Atomic orbital electron populations 1.22088 0.93003 1.05184 1.01626 1.22757 0.95802 0.94224 0.83520 0.90750 1.89196 1.26699 1.74516 1.37529 1.23348 0.84908 0.99750 0.94796 1.22891 0.96220 1.02214 0.96438 1.22938 0.96032 0.98075 0.99987 0.88072 1.19998 0.82460 0.84888 0.81614 1.90726 1.56211 1.38731 1.54344 1.49014 1.42630 1.34306 1.08610 1.21907 0.95907 0.87980 0.95081 1.22358 0.94835 0.99615 1.03529 1.20281 0.87002 0.77940 0.84753 1.90817 1.79811 1.42320 1.24732 1.46125 1.09471 1.67784 1.14594 1.22245 0.80584 0.97232 1.03538 1.21525 0.94546 0.89201 0.94930 1.44805 1.18571 1.48215 1.20985 1.18625 1.35392 0.94254 0.88126 0.89892 1.25280 0.99547 0.96653 0.95300 1.69871 1.48464 1.17855 1.18290 0.87206 0.78429 0.80178 0.83827 1.20847 1.23614 1.20530 1.21481 0.86030 0.98328 0.92939 1.22836 0.87466 0.91218 1.01325 0.91883 0.91743 0.89331 0.92287 0.88990 0.89883 0.89932 0.88543 0.89928 0.90814 0.87899 0.77885 0.92603 0.89123 0.94140 0.92214 0.93021 0.92463 0.95998 0.92678 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 8.53 37.15 0.32 -1.60 16 2 C 0.10 1.05 3.75 -25.96 -0.10 0.95 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 O -0.36 -4.76 11.35 -35.23 -0.40 -5.16 16 5 C 0.05 0.48 7.63 37.93 0.29 0.77 16 6 C -0.14 -1.41 6.67 -25.17 -0.17 -1.58 16 7 C -0.15 -1.66 3.06 -90.20 -0.28 -1.93 16 8 H 0.10 0.84 5.49 -51.93 -0.28 0.55 16 9 C 0.52 8.28 4.38 -10.99 -0.05 8.23 16 10 O -0.52 -10.55 13.40 5.55 0.07 -10.48 16 11 N -0.61 -10.01 2.42 -171.27 -0.41 -10.42 16 12 C 0.12 1.44 5.32 -3.05 -0.02 1.42 16 13 C -0.16 -1.84 6.13 -27.57 -0.17 -2.00 16 14 C 0.52 8.36 4.75 -10.65 -0.05 8.31 16 15 O -0.50 -10.81 15.07 5.56 0.08 -10.73 16 16 N -0.73 -10.58 4.70 -59.69 -0.28 -10.86 16 17 C 0.09 1.45 6.58 -3.72 -0.02 1.43 16 18 C 0.13 2.37 6.09 -3.35 -0.02 2.35 16 19 N -0.60 -14.00 1.95 -171.20 -0.33 -14.34 16 20 C -0.24 -6.49 8.69 -15.06 -0.13 -6.62 16 21 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 22 C 0.03 0.91 4.66 -17.43 -0.08 0.83 16 23 N -0.90 -27.75 13.97 55.49 0.78 -26.98 16 24 Si 0.87 23.60 23.64 -169.99 -4.02 19.58 16 25 H -0.28 -7.57 5.61 56.52 0.32 -7.25 16 26 H -0.31 -8.48 7.11 56.52 0.40 -8.08 16 27 H -0.28 -7.66 7.01 56.52 0.40 -7.26 16 28 C 0.14 3.12 3.43 -3.35 -0.01 3.11 16 29 C 0.09 2.02 3.85 -3.34 -0.01 2.01 16 30 H 0.06 0.67 5.41 -51.93 -0.28 0.39 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.39 6.20 -51.93 -0.32 1.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.08 1.03 7.66 -51.93 -0.40 0.63 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.36 7.80 -51.93 -0.41 0.96 16 38 H 0.08 0.72 6.33 -51.93 -0.33 0.39 16 39 H 0.07 0.65 7.00 -51.93 -0.36 0.28 16 40 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 41 H 0.39 4.60 6.87 -40.82 -0.28 4.32 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.76 7.01 -51.93 -0.36 1.39 16 44 H 0.04 0.70 7.76 -51.93 -0.40 0.30 16 45 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 47 H 0.06 1.20 5.89 -51.93 -0.31 0.89 16 48 H 0.02 0.58 4.08 -51.92 -0.21 0.37 16 49 H 0.05 1.35 6.16 -51.93 -0.32 1.03 16 50 H 0.13 3.12 4.72 -51.92 -0.24 2.87 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -36.26 359.59 -7.14 -43.40 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.54 Total: 4.91 kcal Atomic # 6 Polarization: 16.16 SS G_CDS: -0.50 Total: 15.66 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.25 Total: -62.60 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.24 Total: -26.37 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.02 Total: 19.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.26 -7.14 -43.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.118 kcal (2) G-P(sol) polarization free energy of solvation -36.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds