Wall clock time and date at job start Tue Mar 31 2020 23:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09006 * 110.33160 * 2 1 4 4 O 1.44422 * 110.46933 * 237.68387 * 2 1 3 5 5 C 1.44422 * 105.27713 * 200.61046 * 4 2 1 6 6 C 1.54471 * 104.80453 * 40.51025 * 5 4 2 7 7 C 1.54482 * 110.37296 * 122.24421 * 2 1 3 8 8 H 1.09000 * 110.51821 * 261.56541 * 7 2 1 9 9 C 1.50700 * 110.62761 * 24.22393 * 7 2 1 10 10 O 1.21287 * 120.00258 * 54.51085 * 9 7 2 11 11 N 1.34778 * 119.99863 * 234.52243 * 9 7 2 12 12 C 1.47741 * 121.65271 * 359.70861 * 11 9 7 13 13 C 1.53603 * 108.47646 * 87.80448 * 12 11 9 14 14 C 1.50700 * 109.49461 * 55.02071 * 13 12 11 15 15 O 1.21278 * 120.24220 * 65.63754 * 14 13 12 16 16 N 1.35511 * 119.52041 * 245.65346 * 14 13 12 17 17 C 1.47109 * 118.11110 * 179.97438 * 16 14 13 18 18 C 1.52983 * 109.17965 * 259.44134 * 17 16 14 19 19 N 1.47771 * 108.82034 * 57.75022 * 18 17 16 20 20 C 1.36940 * 121.64721 * 82.98464 * 19 18 17 21 21 H 1.07995 * 120.00362 * 328.12921 * 20 19 18 22 22 C 1.38817 * 119.99734 * 148.13265 * 20 19 18 23 23 N 1.31614 * 119.99931 * 158.53171 * 22 20 19 24 24 Si 1.86796 * 119.99984 * 338.52766 * 22 20 19 25 25 H 1.48497 * 109.47321 * 89.14245 * 24 22 20 26 26 H 1.48501 * 109.46931 * 209.14208 * 24 22 20 27 27 H 1.48508 * 109.47359 * 329.14010 * 24 22 20 28 28 C 1.47745 * 116.70551 * 263.01023 * 19 18 17 29 29 C 1.47765 * 121.65136 * 179.97438 * 11 9 7 30 30 H 1.08998 * 109.47521 * 290.61599 * 1 2 3 31 31 H 1.09002 * 109.47460 * 50.61560 * 1 2 3 32 32 H 1.09004 * 109.47380 * 170.61602 * 1 2 3 33 33 H 1.09001 * 110.37156 * 281.67862 * 5 4 2 34 34 H 1.09007 * 110.37062 * 159.34470 * 5 4 2 35 35 H 1.09005 * 110.51416 * 94.66590 * 6 5 4 36 36 H 1.09004 * 110.51106 * 217.23943 * 6 5 4 37 37 H 1.09000 * 109.58454 * 207.43700 * 12 11 9 38 38 H 1.09004 * 109.58578 * 327.85080 * 12 11 9 39 39 H 1.08996 * 109.49887 * 294.98255 * 13 12 11 40 40 H 1.09008 * 109.40267 * 174.99758 * 13 12 11 41 41 H 0.96996 * 120.94811 * 359.95380 * 16 14 13 42 42 H 1.09003 * 109.51979 * 139.52939 * 17 16 14 43 43 H 1.09005 * 109.51652 * 19.35176 * 17 16 14 44 44 H 1.08992 * 109.58183 * 297.94896 * 18 17 16 45 45 H 1.08996 * 109.58033 * 177.54647 * 18 17 16 46 46 H 0.97000 * 120.00585 * 179.97438 * 23 22 20 47 47 H 1.08992 * 109.57886 * 14.87147 * 28 19 18 48 48 H 1.09008 * 109.68620 * 254.53996 * 28 19 18 49 49 H 1.08997 * 109.59197 * 69.83704 * 29 11 9 50 50 H 1.09007 * 109.58485 * 190.11808 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 8 2.0349 -0.7233 -1.1435 5 6 3.3897 -1.0846 -0.7972 6 6 3.3193 -1.5026 0.6882 7 6 2.0677 -0.7726 1.2248 8 1 2.3411 -0.0818 2.0224 9 6 1.0468 -1.7665 1.7158 10 8 0.5825 -2.5865 0.9521 11 7 0.6494 -1.7441 3.0034 12 6 1.1952 -0.7655 3.9663 13 6 0.3433 0.5109 3.8988 14 6 -1.1040 0.1625 4.1328 15 8 -1.4631 -0.2652 5.2093 16 7 -2.0015 0.3303 3.1314 17 6 -3.4060 -0.0201 3.3934 18 6 -3.7016 -1.3952 2.7915 19 7 -2.7716 -2.3823 3.3781 20 6 -3.0172 -2.9684 4.5912 21 1 -3.5444 -2.4211 5.3585 22 6 -2.5885 -4.2661 4.8345 23 7 -2.4314 -4.6861 6.0719 24 14 -2.2347 -5.4162 3.4057 25 1 -0.8159 -5.2703 2.9924 26 1 -2.4864 -6.8184 3.8250 27 1 -3.1206 -5.0743 2.2639 28 6 -1.5633 -2.7053 2.5916 29 6 -0.3495 -2.7008 3.5234 30 1 -0.3634 0.3618 0.9618 31 1 -0.3634 0.6521 -0.7943 32 1 -0.3634 -1.0139 -0.1676 33 1 4.0536 -0.2288 -0.9195 34 1 3.7284 -1.9195 -1.4108 35 1 3.1986 -2.5824 0.7759 36 1 4.2126 -1.1747 1.2200 37 1 1.1527 -1.1808 4.9732 38 1 2.2287 -0.5353 3.7072 39 1 0.4525 0.9697 2.9161 40 1 0.6773 1.2102 4.6655 41 1 -1.7257 0.6720 2.2665 42 1 -4.0583 0.7248 2.9377 43 1 -3.5797 -0.0484 4.4691 44 1 -3.5618 -1.3588 1.7112 45 1 -4.7286 -1.6806 3.0194 46 1 -2.1321 -5.5930 6.2420 47 1 -1.4250 -1.9574 1.8109 48 1 -1.6727 -3.6906 2.1384 49 1 0.0856 -3.6995 3.5605 50 1 -0.6577 -2.3992 4.5246 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071010291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:56 Heat of formation + Delta-G solvation = -89.397670 kcal Electronic energy + Delta-G solvation = -34122.593778 eV Core-core repulsion = 29957.640513 eV Total energy + Delta-G solvation = -4164.953265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.94833 -40.55427 -39.33949 -37.90296 -36.85567 -35.37822 -33.79877 -33.35548 -32.48995 -31.97633 -31.19054 -28.68996 -27.29297 -26.27818 -25.11167 -24.40527 -23.02787 -22.35655 -22.00415 -21.19355 -19.67626 -18.93758 -18.54668 -18.02079 -17.59594 -17.33175 -16.66691 -16.62631 -16.47706 -16.34648 -16.12256 -15.86425 -15.34111 -15.05279 -14.80265 -14.71681 -14.27358 -14.24526 -14.13589 -13.81105 -13.63898 -13.38566 -13.28867 -13.21252 -13.13636 -12.74814 -12.60866 -12.52022 -12.34723 -12.28428 -12.17640 -12.03871 -11.95481 -11.87583 -11.81632 -11.54823 -10.76232 -10.71523 -10.53936 -10.47565 -9.95056 -9.70346 -8.70680 -8.17203 -5.45789 1.23162 1.30619 1.39526 1.58568 1.84871 2.01284 2.37491 2.58651 2.96064 3.03002 3.33638 3.40404 3.61170 3.78201 3.85805 4.02146 4.09086 4.16435 4.18989 4.29183 4.31300 4.35531 4.37626 4.44238 4.47722 4.53821 4.58422 4.61826 4.66539 4.74058 4.75912 4.85002 4.87393 4.91289 4.95615 4.97703 5.01541 5.06711 5.09582 5.28813 5.32852 5.47631 5.75841 5.91746 5.98320 6.20713 6.51548 6.83601 6.93637 7.22228 7.62471 7.66742 8.10822 9.03997 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013106 B = 0.005591 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.837504 B = 5006.572183 C = 5744.776164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 H 0.120 0.880 4 O -0.397 6.397 5 C 0.045 3.955 6 C -0.139 4.139 7 C -0.140 4.140 8 H 0.145 0.855 9 C 0.521 3.479 10 O -0.574 6.574 11 N -0.612 5.612 12 C 0.109 3.891 13 C -0.152 4.152 14 C 0.505 3.495 15 O -0.566 6.566 16 N -0.717 5.717 17 C 0.101 3.899 18 C 0.117 3.883 19 N -0.610 5.610 20 C -0.200 4.200 21 H 0.048 0.952 22 C -0.011 4.011 23 N -0.945 5.945 24 Si 0.923 3.077 25 H -0.287 1.287 26 H -0.314 1.314 27 H -0.284 1.284 28 C 0.150 3.850 29 C 0.112 3.888 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.405 0.595 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.257 0.743 47 H 0.077 0.923 48 H -0.013 1.013 49 H 0.017 0.983 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.113 19.219 -12.136 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.138 0.862 4 O -0.316 6.316 5 C -0.031 4.031 6 C -0.177 4.177 7 C -0.162 4.162 8 H 0.162 0.838 9 C 0.311 3.689 10 O -0.453 6.453 11 N -0.345 5.345 12 C -0.013 4.013 13 C -0.192 4.192 14 C 0.292 3.708 15 O -0.443 6.443 16 N -0.371 5.371 17 C -0.026 4.026 18 C -0.009 4.009 19 N -0.335 5.335 20 C -0.330 4.330 21 H 0.066 0.934 22 C -0.207 4.207 23 N -0.591 5.591 24 Si 0.756 3.244 25 H -0.215 1.215 26 H -0.243 1.243 27 H -0.210 1.210 28 C 0.025 3.975 29 C -0.012 4.012 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.091 0.909 38 H 0.155 0.845 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.242 0.758 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.096 0.904 48 H 0.005 0.995 49 H 0.035 0.965 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.512 18.306 -11.885 25.670 hybrid contribution -0.166 -1.817 -0.345 1.857 sum 13.346 16.489 -12.230 24.486 Atomic orbital electron populations 1.22069 0.94265 1.02735 1.02843 1.23035 0.95001 0.95940 0.82508 0.86239 1.89169 1.28485 1.75237 1.38746 1.23551 0.84150 1.01079 0.94330 1.22957 0.97272 1.00176 0.97304 1.23060 0.94430 0.97278 1.01391 0.83763 1.20973 0.82456 0.85020 0.80470 1.90717 1.58005 1.40974 1.55590 1.49017 1.41660 1.34040 1.09805 1.22232 0.98751 0.87187 0.93148 1.22400 0.90461 0.99496 1.06888 1.21268 0.89159 0.76496 0.83875 1.90809 1.81159 1.45077 1.27292 1.46083 1.08730 1.66966 1.15319 1.21970 0.82593 0.96624 1.01383 1.21821 0.93479 0.89414 0.96176 1.44888 1.20037 1.48685 1.19853 1.18359 1.32507 0.93291 0.88870 0.93403 1.25587 1.00979 0.97868 0.96231 1.69958 1.51444 1.18064 1.19676 0.86372 0.77738 0.78634 0.81618 1.21486 1.24282 1.21049 1.21335 0.86099 0.96945 0.93132 1.22173 0.88425 0.90844 0.99749 0.90656 0.90203 0.93842 0.88738 0.89581 0.93276 0.85934 0.90949 0.84505 0.86802 0.84878 0.75755 0.87866 0.92763 0.91859 0.92559 0.93322 0.90434 0.99535 0.96494 0.88472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 8.53 71.98 0.61 -2.64 16 2 C 0.09 1.58 3.75 31.09 0.12 1.70 16 3 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 4 O -0.40 -9.22 11.35 -148.98 -1.69 -10.91 16 5 C 0.05 0.72 7.63 72.48 0.55 1.27 16 6 C -0.14 -2.25 6.67 31.61 0.21 -2.04 16 7 C -0.14 -2.44 3.06 -10.52 -0.03 -2.48 16 8 H 0.14 1.23 5.49 -2.39 -0.01 1.22 16 9 C 0.52 15.45 4.38 87.66 0.38 15.83 16 10 O -0.57 -23.19 13.40 -3.05 -0.04 -23.23 16 11 N -0.61 -19.16 2.42 -814.16 -1.97 -21.13 16 12 C 0.11 2.35 5.32 86.34 0.46 2.80 16 13 C -0.15 -2.74 6.13 30.05 0.18 -2.55 16 14 C 0.50 15.43 4.75 87.54 0.42 15.84 16 15 O -0.57 -24.66 15.07 -3.02 -0.05 -24.70 16 16 N -0.72 -19.00 4.70 -460.74 -2.16 -21.16 16 17 C 0.10 3.09 6.58 86.26 0.57 3.66 16 18 C 0.12 4.34 6.09 86.13 0.52 4.86 16 19 N -0.61 -29.07 1.95 -695.55 -1.36 -30.42 16 20 C -0.20 -11.55 8.69 84.03 0.73 -10.82 16 21 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 22 C -0.01 -0.69 4.66 84.86 0.40 -0.29 16 23 N -0.94 -61.25 13.97 21.65 0.30 -60.95 16 24 Si 0.92 51.74 23.64 68.60 1.62 53.36 16 25 H -0.29 -16.19 5.61 99.48 0.56 -15.63 16 26 H -0.31 -17.70 7.11 99.48 0.71 -16.99 16 27 H -0.28 -15.89 7.01 99.48 0.70 -15.20 16 28 C 0.15 6.94 3.43 86.15 0.30 7.24 16 29 C 0.11 5.03 3.85 86.14 0.33 5.36 16 30 H 0.07 1.24 5.41 -2.39 -0.01 1.22 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.04 1.30 6.20 -2.38 -0.01 1.28 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.05 1.14 7.66 -2.38 -0.02 1.12 16 36 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.96 7.80 -2.39 -0.02 1.95 16 38 H 0.14 1.50 6.33 -2.38 -0.02 1.49 16 39 H 0.11 1.17 7.00 -2.39 -0.02 1.15 16 40 H 0.13 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.41 7.86 6.87 -92.71 -0.64 7.22 16 42 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 2.12 7.01 -2.38 -0.02 2.10 16 44 H 0.06 2.08 7.76 -2.39 -0.02 2.06 16 45 H 0.06 2.12 8.13 -2.39 -0.02 2.11 16 46 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 47 H 0.08 3.23 5.89 -2.39 -0.01 3.22 16 48 H -0.01 -0.68 4.08 -2.38 -0.01 -0.69 16 49 H 0.02 0.87 6.16 -2.39 -0.01 0.86 16 50 H 0.10 5.01 4.72 -2.38 -0.01 5.00 16 Total: -1.00 -90.58 359.59 0.58 -90.00 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.18 Total: 11.40 kcal Atomic # 6 Polarization: 32.00 SS G_CDS: 5.75 Total: 37.75 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -5.19 Total: -133.66 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -1.78 Total: -58.85 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 1.62 Total: 53.36 kcal Total: -90.58 0.58 -90.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071010291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.600 kcal (2) G-P(sol) polarization free energy of solvation -90.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds