Wall clock time and date at job start Tue Mar 31 2020 23:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.51616 * 2 1 4 4 C 1.53285 * 109.50905 * 239.90043 * 2 1 3 5 5 N 1.47170 * 108.56022 * 187.08090 * 4 2 1 6 6 C 1.34771 * 121.07706 * 231.25770 * 5 4 2 7 7 O 1.21277 * 119.99774 * 174.20226 * 6 5 4 8 8 C 1.50700 * 120.00043 * 354.19277 * 6 5 4 9 9 C 1.53003 * 109.47419 * 308.64388 * 8 6 5 10 10 C 1.53004 * 109.46949 * 68.64298 * 8 6 5 11 11 C 1.50692 * 109.47157 * 188.63923 * 8 6 5 12 12 N 1.34782 * 120.00036 * 179.97438 * 11 8 6 13 13 O 1.21276 * 120.00406 * 0.02562 * 11 8 6 14 14 C 1.47339 * 117.84469 * 51.23368 * 5 4 2 15 15 C 1.52360 * 108.40334 * 310.80727 * 14 5 4 16 16 C 1.54374 * 110.38515 * 286.60989 * 15 14 5 17 17 C 1.54471 * 103.03086 * 207.49720 * 16 15 14 18 18 N 1.47551 * 107.05241 * 21.55129 * 17 16 15 19 19 C 1.36938 * 125.56979 * 181.00835 * 18 17 16 20 20 H 1.08000 * 120.00091 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99772 * 359.92506 * 19 18 17 22 22 N 1.31619 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00025 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46846 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47155 * 119.99786 * 23 21 19 26 26 H 1.48500 * 109.46910 * 240.00282 * 23 21 19 27 27 C 1.47580 * 108.80492 * 0.94374 * 18 17 16 28 28 O 1.41886 * 111.44574 * 50.08000 * 15 14 5 29 29 H 1.08992 * 109.47357 * 180.10051 * 1 2 3 30 30 H 1.09006 * 109.46889 * 300.10086 * 1 2 3 31 31 H 1.09002 * 109.47264 * 60.09452 * 1 2 3 32 32 H 1.08994 * 109.62133 * 67.36192 * 4 2 1 33 33 H 1.08998 * 109.77505 * 306.89439 * 4 2 1 34 34 H 1.09004 * 109.46768 * 75.88548 * 9 8 6 35 35 H 1.09001 * 109.47107 * 195.88769 * 9 8 6 36 36 H 1.08999 * 109.46646 * 315.88812 * 9 8 6 37 37 H 1.08999 * 109.46842 * 69.89515 * 10 8 6 38 38 H 1.09000 * 109.47391 * 189.89664 * 10 8 6 39 39 H 1.09004 * 109.46814 * 309.90045 * 10 8 6 40 40 H 0.96995 * 119.99821 * 0.02562 * 12 11 8 41 41 H 0.96998 * 120.00128 * 179.97438 * 12 11 8 42 42 H 1.08997 * 109.67790 * 191.08324 * 14 5 4 43 43 H 1.08993 * 109.70755 * 70.55366 * 14 5 4 44 44 H 1.08994 * 110.73799 * 325.92804 * 16 15 14 45 45 H 1.08998 * 110.73568 * 89.06720 * 16 15 14 46 46 H 1.09000 * 109.87498 * 141.01634 * 17 16 15 47 47 H 1.09003 * 109.87526 * 262.16756 * 17 16 15 48 48 H 0.97004 * 119.99523 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.37459 * 217.89361 * 27 18 17 50 50 H 1.08994 * 110.47155 * 95.59329 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2500 5 7 3.5034 -0.8629 -1.1458 6 6 4.3124 -0.4742 -2.1511 7 8 5.5161 -0.4986 -2.0047 8 6 3.7214 -0.0094 -3.4571 9 6 2.7189 -1.0491 -3.9621 10 6 3.0075 1.3274 -3.2467 11 6 4.8211 0.1629 -4.4729 12 7 4.5261 0.5742 -5.7221 13 8 5.9714 -0.0693 -4.1668 14 6 4.0534 -1.4397 0.0935 15 6 3.4217 -0.7220 1.2798 16 6 4.0034 0.7011 1.4191 17 6 3.8578 0.9905 2.9295 18 7 3.7514 -0.3135 3.6116 19 6 3.5893 -0.4968 4.9590 20 1 3.5212 -1.4958 5.3637 21 6 3.5135 0.6014 5.8046 22 7 3.5970 1.8188 5.3114 23 14 3.2931 0.3514 7.6427 24 1 3.2269 -1.1021 7.9401 25 1 4.4423 0.9532 8.3654 26 1 2.0342 1.0042 8.0836 27 6 3.8467 -1.3870 2.6034 28 8 2.0080 -0.6777 1.1665 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3634 0.5124 -0.8908 32 1 1.7916 -0.1440 -2.1379 33 1 1.5846 -1.7117 -1.3173 34 1 1.7969 -0.9747 -3.3854 35 1 2.5048 -0.8659 -5.0150 36 1 3.1409 -2.0473 -3.8453 37 1 3.7450 2.1075 -3.0582 38 1 2.4340 1.5775 -4.1393 39 1 2.3347 1.2495 -2.3926 40 1 3.6061 0.7596 -5.9671 41 1 5.2340 0.6855 -6.3759 42 1 5.1344 -1.3017 0.1143 43 1 3.8181 -2.5029 0.1400 44 1 5.0518 0.7203 1.1220 45 1 3.4242 1.4139 0.8322 46 1 4.7339 1.5299 3.2896 47 1 2.9580 1.5790 3.1090 48 1 3.5444 2.5862 5.9024 49 1 3.1688 -2.2033 2.8529 50 1 4.8708 -1.7534 2.5323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071179006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:40 Heat of formation + Delta-G solvation = -59.533931 kcal Electronic energy + Delta-G solvation = -32462.786313 eV Core-core repulsion = 28299.128037 eV Total energy + Delta-G solvation = -4163.658276 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34980 -39.81370 -38.18346 -36.50596 -35.53060 -34.26223 -33.47659 -32.81357 -31.32128 -29.29022 -28.46894 -27.92381 -26.73129 -25.73051 -24.41139 -23.72951 -21.87070 -21.40312 -20.16708 -19.47696 -19.03133 -17.74073 -17.06008 -16.97880 -16.43722 -16.03789 -15.87230 -15.57143 -15.00802 -14.67041 -14.59666 -14.35031 -14.10792 -13.94458 -13.75541 -13.43939 -13.20555 -12.95813 -12.73830 -12.65228 -12.46747 -12.32222 -12.25396 -11.95534 -11.90390 -11.68197 -11.55958 -11.38121 -10.97684 -10.87172 -10.84940 -10.22440 -10.19045 -10.16881 -10.04694 -9.95888 -9.89697 -9.64896 -9.47203 -9.28969 -8.53851 -8.31220 -6.76976 -5.64575 -2.97415 2.39824 2.66596 2.67952 3.30058 3.44440 3.49584 3.52231 3.85962 4.01961 4.27401 4.49605 4.53580 4.61918 4.66949 4.78167 4.97017 5.03483 5.06761 5.13220 5.16705 5.21854 5.28354 5.34676 5.46331 5.50488 5.58164 5.61724 5.63940 5.71613 5.81221 5.84690 5.96639 6.00357 6.17168 6.19478 6.39682 6.52178 6.53107 6.55427 6.59229 6.69044 7.01858 7.35631 7.61075 7.68170 7.70936 7.88972 8.03388 8.23697 8.30310 9.27254 9.87690 10.53634 11.47465 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.003120 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.417774 B = 8973.531347 C = 9461.210082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 H 0.065 0.935 4 C 0.059 3.941 5 N -0.609 5.609 6 C 0.524 3.476 7 O -0.493 6.493 8 C -0.104 4.104 9 C -0.154 4.154 10 C -0.152 4.152 11 C 0.526 3.474 12 N -0.858 5.858 13 O -0.494 6.494 14 C 0.099 3.901 15 C 0.094 3.906 16 C -0.165 4.165 17 C 0.187 3.813 18 N -0.600 5.600 19 C -0.222 4.222 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.153 3.847 28 O -0.343 6.343 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.398 0.602 41 H 0.403 0.597 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.250 0.750 49 H 0.050 0.950 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 -2.613 -24.406 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.008 3.992 3 H 0.083 0.917 4 C -0.064 4.064 5 N -0.344 5.344 6 C 0.309 3.691 7 O -0.365 6.365 8 C -0.110 4.110 9 C -0.211 4.211 10 C -0.209 4.209 11 C 0.308 3.692 12 N -0.424 5.424 13 O -0.365 6.365 14 C -0.024 4.024 15 C 0.053 3.947 16 C -0.203 4.203 17 C 0.062 3.938 18 N -0.326 5.326 19 C -0.350 4.350 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.026 3.974 28 O -0.262 6.262 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.226 0.774 41 H 0.234 0.766 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.069 0.931 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.745 -2.794 -23.589 24.693 hybrid contribution -0.272 0.285 0.310 0.501 sum -7.017 -2.509 -23.279 24.443 Atomic orbital electron populations 1.21701 0.92518 1.03015 1.02728 1.22477 0.95251 0.96097 0.85385 0.91734 1.23124 0.80709 1.02214 1.00335 1.48041 1.06377 1.63329 1.16700 1.19776 0.86848 0.78207 0.84231 1.90843 1.13691 1.51367 1.80564 1.20853 0.96537 0.99389 0.94267 1.22255 0.98582 0.98217 1.02050 1.22107 1.01046 0.93985 1.03775 1.19841 0.89555 0.77012 0.82776 1.43801 1.12933 1.72538 1.13089 1.90908 1.20587 1.46953 1.78010 1.22140 1.00720 0.97155 0.82343 1.22381 0.80945 0.96483 0.94912 1.23356 1.00083 0.95676 1.01232 1.21176 1.00700 0.87720 0.84197 1.44546 1.85858 1.00045 1.02200 1.19097 1.42400 0.92906 0.80646 0.90359 1.24787 1.02408 0.95284 0.98091 1.69982 1.57096 0.96892 1.33057 0.86038 0.77255 0.77258 0.85185 1.20519 1.21853 1.21859 1.21322 0.97508 0.92527 0.86009 1.87919 1.20232 1.76442 1.41574 0.91712 0.91001 0.91357 0.87599 0.90530 0.89469 0.91098 0.91212 0.91008 0.90595 0.89844 0.77387 0.76621 0.87984 0.90968 0.91619 0.92176 0.93931 0.93531 0.93931 0.93148 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.57 37.16 0.36 -1.08 16 2 C 0.07 0.86 3.16 -26.58 -0.08 0.77 16 3 H 0.06 0.89 6.23 -51.93 -0.32 0.56 16 4 C 0.06 0.60 3.54 -3.53 -0.01 0.58 16 5 N -0.61 -8.18 2.93 -172.69 -0.51 -8.69 16 6 C 0.52 7.66 6.41 -10.99 -0.07 7.59 16 7 O -0.49 -9.67 13.73 -18.87 -0.26 -9.93 16 8 C -0.10 -1.01 0.59 -156.81 -0.09 -1.11 16 9 C -0.15 -0.97 7.90 37.16 0.29 -0.68 16 10 C -0.15 -1.10 7.95 37.16 0.30 -0.80 16 11 C 0.53 6.04 6.72 -10.99 -0.07 5.97 16 12 N -0.86 -5.26 8.54 31.22 0.27 -4.99 16 13 O -0.49 -8.61 15.06 -18.87 -0.28 -8.89 16 14 C 0.10 1.56 5.31 -3.91 -0.02 1.54 16 15 C 0.09 1.73 0.84 -89.65 -0.08 1.65 16 16 C -0.16 -3.32 5.85 -25.24 -0.15 -3.46 16 17 C 0.19 4.73 5.40 -2.69 -0.01 4.71 16 18 N -0.60 -15.81 3.41 -169.93 -0.58 -16.39 16 19 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -27.71 10.31 55.49 0.57 -27.13 16 23 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.15 3.28 6.42 -2.87 -0.02 3.26 16 28 O -0.34 -6.11 9.93 -35.22 -0.35 -6.46 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.75 2.54 -51.93 -0.13 0.61 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.41 4.94 -51.93 -0.26 0.16 16 35 H 0.07 0.26 7.20 -51.93 -0.37 -0.11 16 36 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 37 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 38 H 0.08 0.28 7.83 -51.93 -0.41 -0.13 16 39 H 0.08 0.59 5.24 -51.93 -0.27 0.32 16 40 H 0.40 1.06 7.80 -40.82 -0.32 0.74 16 41 H 0.40 2.15 8.93 -40.82 -0.36 1.78 16 42 H 0.10 1.78 6.84 -51.93 -0.36 1.42 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.33 7.83 -51.93 -0.41 0.92 16 45 H 0.06 1.12 6.08 -51.93 -0.32 0.81 16 46 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 47 H 0.05 1.31 7.40 -51.93 -0.38 0.92 16 48 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.75 7.99 -51.93 -0.42 0.34 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -38.78 375.70 -8.05 -46.83 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.63 Total: 0.37 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 0.08 Total: 12.07 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.25 Total: -57.21 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.89 Total: -25.29 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.78 -8.05 -46.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071179006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.703 kcal (2) G-P(sol) polarization free energy of solvation -38.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds