Wall clock time and date at job start Tue Mar 31 2020 23:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.51616 * 2 1 4 4 C 1.53285 * 109.50905 * 239.90043 * 2 1 3 5 5 N 1.47170 * 108.56022 * 187.08090 * 4 2 1 6 6 C 1.34771 * 121.07706 * 231.25770 * 5 4 2 7 7 O 1.21277 * 119.99774 * 174.20226 * 6 5 4 8 8 C 1.50700 * 120.00043 * 354.19277 * 6 5 4 9 9 C 1.53003 * 109.47419 * 308.64388 * 8 6 5 10 10 C 1.53004 * 109.46949 * 68.64298 * 8 6 5 11 11 C 1.50692 * 109.47157 * 188.63923 * 8 6 5 12 12 N 1.34782 * 120.00036 * 179.97438 * 11 8 6 13 13 O 1.21276 * 120.00406 * 0.02562 * 11 8 6 14 14 C 1.47339 * 117.84469 * 51.23368 * 5 4 2 15 15 C 1.52360 * 108.40334 * 310.80727 * 14 5 4 16 16 C 1.54374 * 110.38515 * 286.60989 * 15 14 5 17 17 C 1.54471 * 103.03086 * 207.49720 * 16 15 14 18 18 N 1.47551 * 107.05241 * 21.55129 * 17 16 15 19 19 C 1.36938 * 125.56979 * 181.00835 * 18 17 16 20 20 H 1.08000 * 120.00091 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99772 * 359.92506 * 19 18 17 22 22 N 1.31619 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00025 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46846 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47155 * 119.99786 * 23 21 19 26 26 H 1.48500 * 109.46910 * 240.00282 * 23 21 19 27 27 C 1.47580 * 108.80492 * 0.94374 * 18 17 16 28 28 O 1.41886 * 111.44574 * 50.08000 * 15 14 5 29 29 H 1.08992 * 109.47357 * 180.10051 * 1 2 3 30 30 H 1.09006 * 109.46889 * 300.10086 * 1 2 3 31 31 H 1.09002 * 109.47264 * 60.09452 * 1 2 3 32 32 H 1.08994 * 109.62133 * 67.36192 * 4 2 1 33 33 H 1.08998 * 109.77505 * 306.89439 * 4 2 1 34 34 H 1.09004 * 109.46768 * 75.88548 * 9 8 6 35 35 H 1.09001 * 109.47107 * 195.88769 * 9 8 6 36 36 H 1.08999 * 109.46646 * 315.88812 * 9 8 6 37 37 H 1.08999 * 109.46842 * 69.89515 * 10 8 6 38 38 H 1.09000 * 109.47391 * 189.89664 * 10 8 6 39 39 H 1.09004 * 109.46814 * 309.90045 * 10 8 6 40 40 H 0.96995 * 119.99821 * 0.02562 * 12 11 8 41 41 H 0.96998 * 120.00128 * 179.97438 * 12 11 8 42 42 H 1.08997 * 109.67790 * 191.08324 * 14 5 4 43 43 H 1.08993 * 109.70755 * 70.55366 * 14 5 4 44 44 H 1.08994 * 110.73799 * 325.92804 * 16 15 14 45 45 H 1.08998 * 110.73568 * 89.06720 * 16 15 14 46 46 H 1.09000 * 109.87498 * 141.01634 * 17 16 15 47 47 H 1.09003 * 109.87526 * 262.16756 * 17 16 15 48 48 H 0.97004 * 119.99523 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.37459 * 217.89361 * 27 18 17 50 50 H 1.08994 * 110.47155 * 95.59329 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 -1.2500 5 7 3.5034 -0.8629 -1.1458 6 6 4.3124 -0.4742 -2.1511 7 8 5.5161 -0.4986 -2.0047 8 6 3.7214 -0.0094 -3.4571 9 6 2.7189 -1.0491 -3.9621 10 6 3.0075 1.3274 -3.2467 11 6 4.8211 0.1629 -4.4729 12 7 4.5261 0.5742 -5.7221 13 8 5.9714 -0.0693 -4.1668 14 6 4.0534 -1.4397 0.0935 15 6 3.4217 -0.7220 1.2798 16 6 4.0034 0.7011 1.4191 17 6 3.8578 0.9905 2.9295 18 7 3.7514 -0.3135 3.6116 19 6 3.5893 -0.4968 4.9590 20 1 3.5212 -1.4958 5.3637 21 6 3.5135 0.6014 5.8046 22 7 3.5970 1.8188 5.3114 23 14 3.2931 0.3514 7.6427 24 1 3.2269 -1.1021 7.9401 25 1 4.4423 0.9532 8.3654 26 1 2.0342 1.0042 8.0836 27 6 3.8467 -1.3870 2.6034 28 8 2.0080 -0.6777 1.1665 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3634 0.5124 -0.8908 32 1 1.7916 -0.1440 -2.1379 33 1 1.5846 -1.7117 -1.3173 34 1 1.7969 -0.9747 -3.3854 35 1 2.5048 -0.8659 -5.0150 36 1 3.1409 -2.0473 -3.8453 37 1 3.7450 2.1075 -3.0582 38 1 2.4340 1.5775 -4.1393 39 1 2.3347 1.2495 -2.3926 40 1 3.6061 0.7596 -5.9671 41 1 5.2340 0.6855 -6.3759 42 1 5.1344 -1.3017 0.1143 43 1 3.8181 -2.5029 0.1400 44 1 5.0518 0.7203 1.1220 45 1 3.4242 1.4139 0.8322 46 1 4.7339 1.5299 3.2896 47 1 2.9580 1.5790 3.1090 48 1 3.5444 2.5862 5.9024 49 1 3.1688 -2.2033 2.8529 50 1 4.8708 -1.7534 2.5323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071179006.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:39 Heat of formation + Delta-G solvation = -90.460417 kcal Electronic energy + Delta-G solvation = -32464.127386 eV Core-core repulsion = 28299.128037 eV Total energy + Delta-G solvation = -4164.999349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.37455 -41.00207 -39.35996 -37.98543 -36.66389 -35.36483 -34.76626 -33.95739 -32.85508 -31.10486 -30.02295 -28.43095 -27.73379 -27.34264 -25.69419 -25.02253 -23.09208 -22.44623 -22.03973 -20.61564 -20.17470 -18.96811 -18.53990 -18.04332 -17.69722 -17.03372 -16.84459 -16.76487 -16.53030 -16.10799 -15.77120 -15.63646 -15.33715 -15.17297 -14.94827 -14.87797 -14.33762 -14.06470 -13.95117 -13.68771 -13.57349 -13.42195 -13.31006 -13.09634 -13.01059 -12.96799 -12.80967 -12.74388 -12.40173 -12.23858 -12.22204 -12.07489 -11.97204 -11.86813 -11.67492 -11.35190 -11.07896 -10.88541 -10.72812 -10.61302 -10.33359 -9.50557 -8.92827 -7.85241 -5.21171 1.45020 1.46911 1.51192 1.57352 1.68042 1.68462 2.48557 2.55775 2.63442 3.17150 3.33392 3.45035 3.58729 3.66463 3.81694 3.84442 3.87874 3.91716 4.03259 4.06391 4.17358 4.37683 4.39857 4.46542 4.52817 4.60421 4.67525 4.69636 4.71825 4.75290 4.77280 4.82448 4.85956 4.94446 5.06360 5.11058 5.18087 5.19290 5.32059 5.39838 5.42312 5.55854 5.68453 5.93093 6.15228 6.29392 6.41002 6.49418 7.07048 7.11416 7.41995 7.73463 8.39221 9.26046 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.003120 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.417774 B = 8973.531347 C = 9461.210082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.055 3.945 3 H 0.052 0.948 4 C 0.062 3.938 5 N -0.607 5.607 6 C 0.514 3.486 7 O -0.553 6.553 8 C -0.097 4.097 9 C -0.151 4.151 10 C -0.152 4.152 11 C 0.520 3.480 12 N -0.828 5.828 13 O -0.566 6.566 14 C 0.106 3.894 15 C 0.114 3.886 16 C -0.149 4.149 17 C 0.200 3.800 18 N -0.621 5.621 19 C -0.238 4.238 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.291 1.291 27 C 0.146 3.854 28 O -0.369 6.369 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.146 0.854 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.420 0.580 41 H 0.409 0.591 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.002 0.998 47 H 0.012 0.988 48 H 0.246 0.754 49 H 0.055 0.945 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 -3.472 -27.340 29.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 H 0.070 0.930 4 C -0.059 4.059 5 N -0.341 5.341 6 C 0.302 3.698 7 O -0.429 6.429 8 C -0.103 4.103 9 C -0.208 4.208 10 C -0.209 4.209 11 C 0.303 3.697 12 N -0.395 5.395 13 O -0.443 6.443 14 C -0.017 4.017 15 C 0.073 3.927 16 C -0.188 4.188 17 C 0.075 3.925 18 N -0.348 5.348 19 C -0.367 4.367 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.218 1.218 27 C 0.020 3.980 28 O -0.288 6.288 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.131 0.869 32 H 0.163 0.837 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.252 0.748 41 H 0.241 0.759 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.020 0.980 47 H 0.030 0.970 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.030 -3.664 -26.599 28.663 hybrid contribution 0.688 0.576 1.165 1.471 sum -9.342 -3.088 -25.434 27.271 Atomic orbital electron populations 1.21747 0.89942 1.03940 1.03730 1.22877 0.97207 0.95356 0.84860 0.92996 1.23404 0.78269 1.03918 1.00277 1.48117 1.07888 1.62591 1.15486 1.20774 0.86300 0.76977 0.85786 1.90823 1.16523 1.53775 1.81813 1.20900 0.96707 1.01757 0.90966 1.22354 0.97872 0.95979 1.04625 1.22217 1.00681 0.91572 1.06410 1.20245 0.88941 0.76272 0.84206 1.43548 1.14521 1.70077 1.11317 1.90891 1.23388 1.50480 1.79500 1.21840 0.99303 0.97927 0.82677 1.21979 0.81948 0.94401 0.94404 1.23149 1.00259 0.97930 0.97448 1.20820 0.97136 0.87119 0.87426 1.44832 1.85757 1.01550 1.02630 1.19521 1.41814 0.93302 0.82068 0.89709 1.25697 1.02671 0.95042 1.02772 1.70214 1.58215 0.97545 1.34333 0.84949 0.76702 0.77898 0.79410 1.18780 1.22038 1.21774 1.21513 0.98073 0.91747 0.86680 1.87881 1.19154 1.77182 1.44586 0.90788 0.93490 0.86888 0.83699 0.88169 0.87081 0.87481 0.92747 0.93205 0.85669 0.89285 0.74788 0.75886 0.90231 0.89087 0.92227 0.90657 0.97951 0.96977 0.94501 0.92660 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.57 71.98 0.69 -1.58 16 2 C 0.05 1.28 3.16 30.69 0.10 1.37 16 3 H 0.05 1.34 6.23 -2.38 -0.01 1.33 16 4 C 0.06 1.02 3.54 86.35 0.31 1.32 16 5 N -0.61 -15.36 2.93 -818.67 -2.40 -17.76 16 6 C 0.51 14.67 6.41 87.66 0.56 15.23 16 7 O -0.55 -22.67 13.73 20.34 0.28 -22.39 16 8 C -0.10 -1.62 0.59 -53.67 -0.03 -1.65 16 9 C -0.15 -1.15 7.90 71.98 0.57 -0.58 16 10 C -0.15 -1.58 7.95 71.98 0.57 -1.01 16 11 C 0.52 11.16 6.72 87.65 0.59 11.75 16 12 N -0.83 -7.52 8.54 -173.54 -1.48 -9.00 16 13 O -0.57 -20.31 15.06 20.35 0.31 -20.01 16 14 C 0.11 3.33 5.31 86.01 0.46 3.79 16 15 C 0.11 4.23 0.84 -10.17 -0.01 4.22 16 16 C -0.15 -6.26 5.85 31.56 0.18 -6.08 16 17 C 0.20 10.77 5.40 86.68 0.47 11.24 16 18 N -0.62 -34.07 3.41 -691.54 -2.36 -36.43 16 19 C -0.24 -13.98 10.28 84.03 0.86 -13.12 16 20 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 22 N -0.95 -59.92 10.31 21.65 0.22 -59.70 16 23 Si 0.98 47.45 29.55 68.60 2.03 49.47 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 C 0.15 6.37 6.42 86.55 0.56 6.93 16 28 O -0.37 -12.85 9.93 -148.95 -1.48 -14.33 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.15 1.21 2.54 -2.39 -0.01 1.21 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.11 0.30 4.94 -2.38 -0.01 0.29 16 35 H 0.11 0.08 7.20 -2.39 -0.02 0.06 16 36 H 0.05 0.65 8.03 -2.39 -0.02 0.63 16 37 H 0.05 0.78 8.11 -2.39 -0.02 0.76 16 38 H 0.12 0.08 7.83 -2.39 -0.02 0.06 16 39 H 0.09 0.84 5.24 -2.38 -0.01 0.83 16 40 H 0.42 0.06 7.80 -92.71 -0.72 -0.66 16 41 H 0.41 3.33 8.93 -92.71 -0.83 2.51 16 42 H 0.08 2.89 6.84 -2.39 -0.02 2.87 16 43 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.06 2.56 7.83 -2.39 -0.02 2.54 16 45 H 0.07 2.89 6.08 -2.39 -0.01 2.87 16 46 H 0.00 0.14 7.51 -2.39 -0.02 0.12 16 47 H 0.01 0.72 7.40 -2.39 -0.02 0.70 16 48 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 49 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.04 1.81 7.99 -2.39 -0.02 1.80 16 Total: -1.00 -94.82 375.70 0.89 -93.93 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -0.56 Total: 8.02 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 6.34 Total: 28.19 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -6.02 Total: -122.89 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -0.89 Total: -56.72 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -94.82 0.89 -93.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071179006.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.471 kcal (2) G-P(sol) polarization free energy of solvation -94.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds