Wall clock time and date at job start Tue Mar 31 2020 23:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.54865 * 2 1 4 4 C 1.53284 * 109.50751 * 120.11737 * 2 1 3 5 5 N 1.47161 * 108.56590 * 172.90241 * 4 2 1 6 6 C 1.34779 * 121.07495 * 128.75733 * 5 4 2 7 7 O 1.21275 * 120.00235 * 175.75198 * 6 5 4 8 8 C 1.50704 * 119.99760 * 355.75665 * 6 5 4 9 9 C 1.52994 * 109.47072 * 182.89615 * 8 6 5 10 10 C 1.53000 * 109.47375 * 62.89458 * 8 6 5 11 11 C 1.50706 * 109.46964 * 302.89266 * 8 6 5 12 12 N 1.34774 * 119.99699 * 180.02562 * 11 8 6 13 13 O 1.21278 * 119.99719 * 0.02562 * 11 8 6 14 14 C 1.47332 * 117.85006 * 309.03495 * 5 4 2 15 15 C 1.51954 * 108.62116 * 48.88369 * 14 5 4 16 16 C 1.54342 * 110.49562 * 186.50197 * 15 14 5 17 17 C 1.54466 * 102.87136 * 207.75809 * 16 15 14 18 18 N 1.47086 * 107.29606 * 21.48365 * 17 16 15 19 19 C 1.36936 * 125.62770 * 181.04015 * 18 17 16 20 20 H 1.08004 * 119.99988 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99922 * 359.95384 * 19 18 17 22 22 N 1.31610 * 119.99998 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46981 * 60.00136 * 23 21 19 25 25 H 1.48492 * 109.47246 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47103 * 300.00206 * 23 21 19 27 27 C 1.47567 * 108.74465 * 1.00028 * 18 17 16 28 28 O 1.41894 * 111.51123 * 310.15227 * 15 14 5 29 29 H 1.08995 * 109.47152 * 299.88011 * 1 2 3 30 30 H 1.08995 * 109.46714 * 59.88388 * 1 2 3 31 31 H 1.08998 * 109.46929 * 179.88144 * 1 2 3 32 32 H 1.09000 * 109.62007 * 53.18094 * 4 2 1 33 33 H 1.09001 * 109.62249 * 292.62313 * 4 2 1 34 34 H 1.09005 * 109.46956 * 295.07250 * 9 8 6 35 35 H 1.09009 * 109.47214 * 55.07083 * 9 8 6 36 36 H 1.08994 * 109.47449 * 175.07041 * 9 8 6 37 37 H 1.08997 * 109.46746 * 185.45896 * 10 8 6 38 38 H 1.09009 * 109.46981 * 305.46003 * 10 8 6 39 39 H 1.08997 * 109.47211 * 65.45688 * 10 8 6 40 40 H 0.96993 * 120.00432 * 0.02562 * 12 11 8 41 41 H 0.97005 * 119.99838 * 180.02562 * 12 11 8 42 42 H 1.09005 * 109.67162 * 168.67075 * 14 5 4 43 43 H 1.08991 * 109.68065 * 289.21201 * 14 5 4 44 44 H 1.08996 * 110.73681 * 326.10467 * 16 15 14 45 45 H 1.09000 * 110.73731 * 89.41582 * 16 15 14 46 46 H 1.08991 * 109.87915 * 262.05530 * 17 16 15 47 47 H 1.09005 * 109.99964 * 140.96961 * 17 16 15 48 48 H 0.97008 * 120.00122 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.37521 * 217.86547 * 27 18 17 50 50 H 1.08997 * 110.47131 * 95.55529 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0419 -0.7250 1.2498 5 7 3.5032 -0.8637 1.1455 6 6 4.3124 -0.4757 2.1510 7 8 5.5073 -0.6693 2.0770 8 6 3.7323 0.1987 3.3675 9 6 4.8634 0.5987 4.3170 10 6 2.7838 -0.7661 4.0820 11 6 2.9723 1.4296 2.9450 12 7 2.3645 2.1972 3.8711 13 8 2.9077 1.7293 1.7716 14 6 4.0535 -1.4348 -0.0962 15 6 3.4218 -0.7214 -1.2799 16 6 3.8440 -1.3932 -2.6038 17 6 3.7659 -0.2318 -3.6192 18 7 3.8532 1.0227 -2.8563 19 6 3.8010 2.2841 -3.3866 20 1 3.8739 3.1455 -2.7393 21 6 3.6547 2.4556 -4.7564 22 7 3.5658 1.4058 -5.5452 23 14 3.5827 4.1764 -5.4798 24 1 4.8388 4.9008 -5.1596 25 1 3.4239 4.0875 -6.9535 26 1 2.4276 4.9087 -4.9012 27 6 4.0055 0.6976 -1.4249 28 8 2.0081 -0.6771 -1.1668 29 1 -0.3633 0.5119 0.8910 30 1 -0.3632 0.5156 -0.8889 31 1 -0.3633 -1.0277 -0.0021 32 1 1.5841 -1.7122 1.3135 33 1 1.7919 -0.1445 2.1379 34 1 5.3578 -0.2979 4.6911 35 1 5.5857 1.2155 3.7822 36 1 4.4527 1.1632 5.1540 37 1 2.2908 -0.2482 4.9046 38 1 2.0338 -1.1265 3.3778 39 1 3.3512 -1.6109 4.4724 40 1 2.4165 1.9577 4.8096 41 1 1.8750 2.9893 3.5991 42 1 5.1341 -1.2934 -0.1177 43 1 3.8210 -2.4985 -0.1456 44 1 4.8617 -1.7772 -2.5343 45 1 3.1480 -2.1880 -2.8724 46 1 2.8190 -0.2732 -4.1574 47 1 4.5955 -0.2958 -4.3233 48 1 3.4640 1.5257 -6.5025 49 1 3.4435 1.4035 -0.8136 50 1 5.0581 0.7057 -1.1421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071179008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:47 Heat of formation + Delta-G solvation = -66.270837 kcal Electronic energy + Delta-G solvation = -33275.702384 eV Core-core repulsion = 29111.751974 eV Total energy + Delta-G solvation = -4163.950410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44938 -39.56186 -38.41565 -36.19788 -35.12958 -34.53327 -33.44419 -32.84474 -31.16236 -29.30802 -28.42221 -27.64265 -26.37189 -25.78180 -24.46499 -23.44698 -21.84451 -21.34258 -20.01328 -19.18946 -18.91504 -18.16703 -17.06406 -16.83087 -16.46758 -16.31604 -15.77914 -15.09052 -14.95745 -14.67614 -14.50686 -14.25404 -14.10201 -13.75776 -13.55778 -13.32039 -12.98143 -12.78956 -12.70695 -12.56291 -12.43029 -12.14120 -12.05654 -11.97544 -11.82086 -11.61591 -11.40266 -11.33166 -10.83796 -10.74208 -10.68817 -10.28645 -10.11828 -10.09009 -10.00667 -9.98083 -9.92921 -9.53994 -9.51792 -9.29601 -8.44332 -8.18139 -6.64573 -5.56067 -2.87372 2.28696 2.47175 2.92788 3.28550 3.49922 3.53124 3.55067 4.06080 4.07661 4.38813 4.46484 4.61546 4.64651 4.87395 4.99923 5.06063 5.19186 5.23188 5.27028 5.36042 5.38230 5.42835 5.50714 5.62894 5.64234 5.64621 5.76052 5.77874 5.85399 5.88808 6.00878 6.04270 6.27051 6.30845 6.33571 6.45386 6.54183 6.59496 6.69137 6.81774 6.95038 6.96868 7.42995 7.69295 7.78522 7.89368 7.97549 7.97920 8.14924 8.41654 9.37872 9.97931 10.65244 11.56029 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.004051 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.882160 B = 6910.099956 C = 7280.188466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.091 0.909 4 C 0.082 3.918 5 N -0.592 5.592 6 C 0.543 3.457 7 O -0.535 6.535 8 C -0.106 4.106 9 C -0.125 4.125 10 C -0.154 4.154 11 C 0.522 3.478 12 N -0.851 5.851 13 O -0.508 6.508 14 C 0.099 3.901 15 C 0.094 3.906 16 C -0.130 4.130 17 C 0.183 3.817 18 N -0.599 5.599 19 C -0.219 4.219 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.121 3.879 28 O -0.350 6.350 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.400 0.600 41 H 0.406 0.594 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.049 0.951 47 H 0.043 0.957 48 H 0.251 0.749 49 H 0.052 0.948 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.644 -5.853 24.257 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 H 0.108 0.892 4 C -0.041 4.041 5 N -0.323 5.323 6 C 0.329 3.671 7 O -0.412 6.412 8 C -0.112 4.112 9 C -0.183 4.183 10 C -0.211 4.211 11 C 0.305 3.695 12 N -0.417 5.417 13 O -0.382 6.382 14 C -0.023 4.023 15 C 0.053 3.947 16 C -0.169 4.169 17 C 0.059 3.941 18 N -0.325 5.325 19 C -0.348 4.348 20 H 0.092 0.908 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.213 1.213 27 C -0.005 4.005 28 O -0.269 6.269 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.228 0.772 41 H 0.237 0.763 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.071 -5.909 23.023 24.305 hybrid contribution -0.151 1.299 0.219 1.326 sum -5.222 -4.610 23.242 24.263 Atomic orbital electron populations 1.21669 0.93204 1.02274 1.02520 1.22538 0.94550 0.97756 0.84178 0.89170 1.22687 0.80229 1.00666 1.00530 1.47903 1.06684 1.61516 1.16230 1.19622 0.86277 0.78124 0.83106 1.90692 1.14714 1.56162 1.79594 1.21108 0.98363 0.94864 0.96882 1.21662 0.96386 1.03041 0.97197 1.22194 0.99020 0.99055 1.00869 1.20096 0.78913 0.84354 0.86168 1.43782 1.57072 1.30411 1.10391 1.90909 1.59073 1.71276 1.16892 1.22111 1.00577 0.97062 0.82568 1.22187 0.81432 0.97181 0.93910 1.22835 0.99972 0.99964 0.94087 1.21138 1.01067 0.81425 0.90500 1.44412 1.85936 1.02370 0.99795 1.18995 1.42428 0.82647 0.90714 0.90825 1.24748 1.02616 0.97209 0.95968 1.69950 1.56987 1.26972 1.03257 0.86221 0.77797 0.83915 0.77983 1.21328 1.21650 1.21341 1.21941 0.96969 0.93365 0.88268 1.87801 1.19983 1.76755 1.42361 0.91761 0.91139 0.92256 0.91299 0.89439 0.90517 0.90980 0.91678 0.90880 0.90375 0.90429 0.77178 0.76272 0.88182 0.91104 0.91025 0.91001 0.93295 0.93936 0.93896 0.92989 0.96275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.57 37.16 0.36 -1.50 16 2 C 0.07 1.13 2.96 -26.58 -0.08 1.05 16 3 H 0.09 1.79 4.32 -51.93 -0.22 1.56 16 4 C 0.08 1.09 3.28 -3.53 -0.01 1.08 16 5 N -0.59 -9.11 2.66 -172.94 -0.46 -9.57 16 6 C 0.54 8.24 6.04 -10.98 -0.07 8.17 16 7 O -0.53 -9.77 15.46 5.56 0.09 -9.68 16 8 C -0.11 -1.09 0.60 -156.81 -0.09 -1.18 16 9 C -0.13 -1.10 7.74 37.15 0.29 -0.81 16 10 C -0.15 -1.03 8.09 37.16 0.30 -0.73 16 11 C 0.52 5.71 5.08 -10.98 -0.06 5.66 16 12 N -0.85 -5.22 8.59 31.22 0.27 -4.95 16 13 O -0.51 -8.09 12.62 5.56 0.07 -8.02 16 14 C 0.10 1.69 5.25 -4.12 -0.02 1.67 16 15 C 0.09 1.89 0.83 -89.86 -0.07 1.82 16 16 C -0.13 -2.66 6.12 -25.26 -0.15 -2.81 16 17 C 0.18 4.81 5.39 -2.95 -0.02 4.80 16 18 N -0.60 -16.76 3.40 -170.31 -0.58 -17.34 16 19 C -0.22 -6.61 10.28 -15.06 -0.15 -6.77 16 20 H 0.07 2.18 7.83 -52.48 -0.41 1.77 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -28.49 10.30 55.49 0.57 -27.92 16 23 Si 0.91 23.39 29.55 -169.99 -5.02 18.36 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C 0.12 2.91 6.18 -2.87 -0.02 2.89 16 28 O -0.35 -7.01 9.93 -35.22 -0.35 -7.36 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.09 0.97 3.25 -51.93 -0.17 0.81 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.81 8.00 -51.92 -0.42 0.39 16 36 H 0.06 0.34 7.43 -51.93 -0.39 -0.05 16 37 H 0.07 0.27 7.42 -51.93 -0.39 -0.12 16 38 H 0.08 0.56 4.91 -51.92 -0.26 0.31 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.40 1.13 7.54 -40.82 -0.31 0.82 16 41 H 0.41 2.27 8.93 -40.82 -0.36 1.91 16 42 H 0.10 1.82 6.87 -51.93 -0.36 1.47 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.32 8.00 -51.93 -0.42 0.91 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.05 1.42 7.38 -51.93 -0.38 1.04 16 47 H 0.04 1.21 7.49 -51.93 -0.39 0.82 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.05 1.31 5.84 -51.93 -0.30 1.01 16 50 H 0.02 0.49 7.80 -51.93 -0.40 0.08 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -37.99 373.18 -7.38 -45.36 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.69 Total: 2.55 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 0.10 Total: 12.95 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.20 Total: -59.78 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.19 Total: -25.06 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.99 -7.38 -45.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071179008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.908 kcal (2) G-P(sol) polarization free energy of solvation -37.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds