Wall clock time and date at job start Tue Mar 31 2020 23:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.54865 * 2 1 4 4 C 1.53284 * 109.50751 * 120.11737 * 2 1 3 5 5 N 1.47161 * 108.56590 * 172.90241 * 4 2 1 6 6 C 1.34779 * 121.07495 * 128.75733 * 5 4 2 7 7 O 1.21275 * 120.00235 * 175.75198 * 6 5 4 8 8 C 1.50704 * 119.99760 * 355.75665 * 6 5 4 9 9 C 1.52994 * 109.47072 * 182.89615 * 8 6 5 10 10 C 1.53000 * 109.47375 * 62.89458 * 8 6 5 11 11 C 1.50706 * 109.46964 * 302.89266 * 8 6 5 12 12 N 1.34774 * 119.99699 * 180.02562 * 11 8 6 13 13 O 1.21278 * 119.99719 * 0.02562 * 11 8 6 14 14 C 1.47332 * 117.85006 * 309.03495 * 5 4 2 15 15 C 1.51954 * 108.62116 * 48.88369 * 14 5 4 16 16 C 1.54342 * 110.49562 * 186.50197 * 15 14 5 17 17 C 1.54466 * 102.87136 * 207.75809 * 16 15 14 18 18 N 1.47086 * 107.29606 * 21.48365 * 17 16 15 19 19 C 1.36936 * 125.62770 * 181.04015 * 18 17 16 20 20 H 1.08004 * 119.99988 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99922 * 359.95384 * 19 18 17 22 22 N 1.31610 * 119.99998 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46981 * 60.00136 * 23 21 19 25 25 H 1.48492 * 109.47246 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47103 * 300.00206 * 23 21 19 27 27 C 1.47567 * 108.74465 * 1.00028 * 18 17 16 28 28 O 1.41894 * 111.51123 * 310.15227 * 15 14 5 29 29 H 1.08995 * 109.47152 * 299.88011 * 1 2 3 30 30 H 1.08995 * 109.46714 * 59.88388 * 1 2 3 31 31 H 1.08998 * 109.46929 * 179.88144 * 1 2 3 32 32 H 1.09000 * 109.62007 * 53.18094 * 4 2 1 33 33 H 1.09001 * 109.62249 * 292.62313 * 4 2 1 34 34 H 1.09005 * 109.46956 * 295.07250 * 9 8 6 35 35 H 1.09009 * 109.47214 * 55.07083 * 9 8 6 36 36 H 1.08994 * 109.47449 * 175.07041 * 9 8 6 37 37 H 1.08997 * 109.46746 * 185.45896 * 10 8 6 38 38 H 1.09009 * 109.46981 * 305.46003 * 10 8 6 39 39 H 1.08997 * 109.47211 * 65.45688 * 10 8 6 40 40 H 0.96993 * 120.00432 * 0.02562 * 12 11 8 41 41 H 0.97005 * 119.99838 * 180.02562 * 12 11 8 42 42 H 1.09005 * 109.67162 * 168.67075 * 14 5 4 43 43 H 1.08991 * 109.68065 * 289.21201 * 14 5 4 44 44 H 1.08996 * 110.73681 * 326.10467 * 16 15 14 45 45 H 1.09000 * 110.73731 * 89.41582 * 16 15 14 46 46 H 1.08991 * 109.87915 * 262.05530 * 17 16 15 47 47 H 1.09005 * 109.99964 * 140.96961 * 17 16 15 48 48 H 0.97008 * 120.00122 * 180.02562 * 22 21 19 49 49 H 1.08994 * 110.37521 * 217.86547 * 27 18 17 50 50 H 1.08997 * 110.47131 * 95.55529 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0419 -0.7250 1.2498 5 7 3.5032 -0.8637 1.1455 6 6 4.3124 -0.4757 2.1510 7 8 5.5073 -0.6693 2.0770 8 6 3.7323 0.1987 3.3675 9 6 4.8634 0.5987 4.3170 10 6 2.7838 -0.7661 4.0820 11 6 2.9723 1.4296 2.9450 12 7 2.3645 2.1972 3.8711 13 8 2.9077 1.7293 1.7716 14 6 4.0535 -1.4348 -0.0962 15 6 3.4218 -0.7214 -1.2799 16 6 3.8440 -1.3932 -2.6038 17 6 3.7659 -0.2318 -3.6192 18 7 3.8532 1.0227 -2.8563 19 6 3.8010 2.2841 -3.3866 20 1 3.8739 3.1455 -2.7393 21 6 3.6547 2.4556 -4.7564 22 7 3.5658 1.4058 -5.5452 23 14 3.5827 4.1764 -5.4798 24 1 4.8388 4.9008 -5.1596 25 1 3.4239 4.0875 -6.9535 26 1 2.4276 4.9087 -4.9012 27 6 4.0055 0.6976 -1.4249 28 8 2.0081 -0.6771 -1.1668 29 1 -0.3633 0.5119 0.8910 30 1 -0.3632 0.5156 -0.8889 31 1 -0.3633 -1.0277 -0.0021 32 1 1.5841 -1.7122 1.3135 33 1 1.7919 -0.1445 2.1379 34 1 5.3578 -0.2979 4.6911 35 1 5.5857 1.2155 3.7822 36 1 4.4527 1.1632 5.1540 37 1 2.2908 -0.2482 4.9046 38 1 2.0338 -1.1265 3.3778 39 1 3.3512 -1.6109 4.4724 40 1 2.4165 1.9577 4.8096 41 1 1.8750 2.9893 3.5991 42 1 5.1341 -1.2934 -0.1177 43 1 3.8210 -2.4985 -0.1456 44 1 4.8617 -1.7772 -2.5343 45 1 3.1480 -2.1880 -2.8724 46 1 2.8190 -0.2732 -4.1574 47 1 4.5955 -0.2958 -4.3233 48 1 3.4640 1.5257 -6.5025 49 1 3.4435 1.4035 -0.8136 50 1 5.0581 0.7057 -1.1421 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071179008.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:46 Heat of formation + Delta-G solvation = -97.398927 kcal Electronic energy + Delta-G solvation = -33277.052199 eV Core-core repulsion = 29111.751974 eV Total energy + Delta-G solvation = -4165.300226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.51113 -40.90208 -39.59266 -37.93080 -36.02261 -35.83761 -34.89435 -33.99242 -32.92017 -31.12072 -29.98901 -28.48043 -27.63371 -27.35956 -25.94349 -24.71467 -23.19619 -22.57996 -21.92256 -20.46195 -20.09098 -19.13058 -18.94545 -18.08172 -17.68368 -17.43630 -16.85763 -16.76815 -16.30480 -16.03160 -15.90470 -15.66279 -15.34740 -15.16978 -15.05760 -14.87870 -14.05984 -13.98514 -13.87353 -13.58669 -13.50187 -13.43032 -13.19016 -13.16243 -13.08900 -12.96771 -12.86842 -12.78873 -12.66777 -12.25129 -12.16477 -12.10956 -12.02733 -11.94768 -11.69162 -11.53443 -10.97367 -10.90510 -10.73294 -10.71835 -10.58338 -9.50599 -8.92629 -7.87845 -5.23486 1.33841 1.39147 1.44200 1.50777 1.51815 1.82724 2.45570 2.52523 2.64783 3.14983 3.29061 3.48460 3.63732 3.73414 3.77323 3.79158 3.88793 3.93869 4.02931 4.08826 4.23575 4.37183 4.42275 4.51974 4.57486 4.63776 4.64151 4.65887 4.68795 4.74780 4.79784 4.80954 4.91748 4.94012 5.01707 5.15571 5.17853 5.19515 5.25999 5.33443 5.35653 5.61128 5.71694 5.89802 6.15268 6.27927 6.39616 6.39821 6.99517 7.06783 7.31048 7.72089 8.38283 9.22404 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.004051 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.882160 B = 6910.099956 C = 7280.188466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.059 3.941 3 H 0.053 0.947 4 C 0.091 3.909 5 N -0.596 5.596 6 C 0.530 3.470 7 O -0.577 6.577 8 C -0.100 4.100 9 C -0.123 4.123 10 C -0.151 4.151 11 C 0.519 3.481 12 N -0.823 5.823 13 O -0.566 6.566 14 C 0.105 3.895 15 C 0.109 3.891 16 C -0.118 4.118 17 C 0.192 3.808 18 N -0.619 5.619 19 C -0.248 4.248 20 H 0.067 0.933 21 C -0.061 4.061 22 N -0.947 5.947 23 Si 0.981 3.019 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.278 1.278 27 C 0.126 3.874 28 O -0.370 6.370 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.420 0.580 41 H 0.412 0.588 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.013 0.987 47 H 0.011 0.989 48 H 0.249 0.751 49 H 0.036 0.964 50 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.405 -6.449 27.656 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.001 3.999 3 H 0.071 0.929 4 C -0.031 4.031 5 N -0.327 5.327 6 C 0.318 3.682 7 O -0.456 6.456 8 C -0.107 4.107 9 C -0.181 4.181 10 C -0.208 4.208 11 C 0.302 3.698 12 N -0.389 5.389 13 O -0.444 6.444 14 C -0.018 4.018 15 C 0.067 3.933 16 C -0.156 4.156 17 C 0.067 3.933 18 N -0.345 5.345 19 C -0.377 4.377 20 H 0.085 0.915 21 C -0.254 4.254 22 N -0.596 5.596 23 Si 0.808 3.192 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.204 1.204 27 C 0.000 4.000 28 O -0.289 6.289 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.252 0.748 41 H 0.244 0.756 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.031 0.969 47 H 0.029 0.971 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -6.867 -6.498 26.520 28.155 hybrid contribution 0.403 1.578 -0.793 1.812 sum -6.464 -4.919 25.727 26.979 Atomic orbital electron populations 1.21672 0.90672 1.03706 1.02879 1.22755 0.96509 0.96053 0.84599 0.92939 1.22786 0.78796 1.02027 0.99537 1.48018 1.07763 1.61329 1.15581 1.20594 0.85893 0.77374 0.84310 1.90663 1.16542 1.57657 1.80746 1.21146 0.99467 0.95079 0.94971 1.21712 0.95480 1.03223 0.97681 1.22274 0.98187 0.98779 1.01565 1.20272 0.78849 0.84775 0.85877 1.43548 1.55098 1.29428 1.10787 1.90928 1.61413 1.72721 1.19367 1.21890 0.99316 0.98245 0.82365 1.21945 0.81974 0.94259 0.95074 1.22737 1.02100 0.98168 0.92618 1.20886 0.97749 0.83217 0.91424 1.44707 1.85795 1.02365 1.01659 1.19294 1.43327 0.83708 0.91384 0.91480 1.25645 1.02107 1.01571 0.96082 1.70178 1.57153 1.29049 1.03190 0.85132 0.78123 0.78894 0.77036 1.20435 1.21095 1.20380 1.21944 0.95887 0.96134 0.86005 1.87768 1.19425 1.77021 1.44700 0.88553 0.93667 0.90171 0.88439 0.86975 0.90181 0.94277 0.87417 0.86896 0.90535 0.89627 0.74757 0.75561 0.89900 0.88092 0.88850 0.88645 0.96918 0.97073 0.94180 0.94616 0.98004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.57 71.98 0.69 -2.62 16 2 C 0.06 1.92 2.96 30.69 0.09 2.01 16 3 H 0.05 2.16 4.32 -2.39 -0.01 2.15 16 4 C 0.09 2.20 3.28 86.35 0.28 2.49 16 5 N -0.60 -17.85 2.66 -819.44 -2.18 -20.03 16 6 C 0.53 15.82 6.04 87.66 0.53 16.34 16 7 O -0.58 -21.49 15.46 -3.01 -0.05 -21.54 16 8 C -0.10 -1.84 0.60 -53.67 -0.03 -1.87 16 9 C -0.12 -1.89 7.74 71.98 0.56 -1.34 16 10 C -0.15 -1.34 8.09 71.98 0.58 -0.76 16 11 C 0.52 10.40 5.08 87.66 0.45 10.84 16 12 N -0.82 -7.33 8.59 -173.53 -1.49 -8.82 16 13 O -0.57 -18.16 12.62 -3.02 -0.04 -18.19 16 14 C 0.11 3.55 5.25 85.88 0.45 4.00 16 15 C 0.11 4.46 0.83 -10.30 -0.01 4.45 16 16 C -0.12 -4.89 6.12 31.55 0.19 -4.70 16 17 C 0.19 10.63 5.39 86.77 0.47 11.09 16 18 N -0.62 -36.67 3.40 -692.75 -2.36 -39.03 16 19 C -0.25 -15.73 10.28 84.03 0.86 -14.87 16 20 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.06 -3.77 5.49 84.86 0.47 -3.30 16 22 N -0.95 -60.80 10.30 21.65 0.22 -60.58 16 23 Si 0.98 49.38 29.55 68.60 2.03 51.41 16 24 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 27 C 0.13 6.42 6.18 86.55 0.53 6.96 16 28 O -0.37 -14.87 9.93 -148.95 -1.48 -16.35 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 1.86 8.13 -2.39 -0.02 1.84 16 33 H 0.11 2.16 3.25 -2.39 -0.01 2.15 16 34 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.04 0.86 8.00 -2.38 -0.02 0.84 16 36 H 0.11 0.67 7.43 -2.39 -0.02 0.65 16 37 H 0.11 0.12 7.42 -2.39 -0.02 0.10 16 38 H 0.08 0.74 4.91 -2.38 -0.01 0.73 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.42 0.31 7.54 -92.71 -0.70 -0.38 16 41 H 0.41 3.45 8.93 -92.70 -0.83 2.62 16 42 H 0.08 3.09 6.87 -2.38 -0.02 3.08 16 43 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 44 H 0.09 3.45 8.00 -2.39 -0.02 3.43 16 45 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 46 H 0.01 0.78 7.38 -2.39 -0.02 0.76 16 47 H 0.01 0.67 7.49 -2.38 -0.02 0.65 16 48 H 0.25 15.38 8.31 -92.70 -0.77 14.61 16 49 H 0.04 1.93 5.84 -2.39 -0.01 1.92 16 50 H 0.00 0.12 7.80 -2.39 -0.02 0.10 16 Total: -1.00 -91.33 373.18 0.23 -91.10 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -0.54 Total: 13.30 kcal Atomic # 6 Polarization: 22.62 SS G_CDS: 6.11 Total: 28.73 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -5.80 Total: -128.45 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -1.56 Total: -56.09 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.03 Total: 51.41 kcal Total: -91.33 0.23 -91.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071179008.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.297 kcal (2) G-P(sol) polarization free energy of solvation -91.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds